janelia-flylight.yaml

Name: "Fly Brain Anatomy: FlyLight Gen1 and Split-GAL4 Imagery"
Description: |
  This data set, made available by Janelia's FlyLight project, consists of fluorescence images 
  of Drosophila melanogaster driver lines, aligned to standard templates, and stored in formats 
  suitable for rapid searching and visualization. Additional data will be added as it is published. 
  A large release of Gen1 MCFO samples is coming at the beginning of May 2020. 
Documentation: https://open.quiltdata.com/b/janelia-flylight-imagery
Contact: flylight@janelia.hhmi.org
ManagedBy: "[Janelia Research Campus](https://www.janelia.org)"
UpdateFrequency: As required
Tags:
  - aws-pds
  - biology
  - life sciences
  - neuroscience
  - neurobiology
  - neuroimaging
  - fluorescence imaging
  - microscopy
  - image processing
License: "[Creative Commons Attribution 4.0 International](https://creativecommons.org/licenses/by/4.0/)"
Resources:
  - Description: Imagery and Metadata
    ARN: arn:aws:s3:::janelia-flylight-imagery
    Region: us-east-1
    Type: S3 Bucket
  - Description: Alignment Templates 
    ARN: arn:aws:s3:::janelia-flylight-templates
    Region: us-east-1
    Type: S3 Bucket
  - Description: Color Depth MIPs
    ARN: arn:aws:s3:::janelia-flylight-color-depth
    Region: us-east-1
    Type: S3 Bucket
DataAtWork:
  Tutorials:
    - Title: File Operations on AWS S3
      URL: https://github.com/JaneliaSciComp/open-data-flylight/blob/master/tutorials/File_operations_on_AWS_S3.ipynb
      AuthorName: Rob Svirskas
    - Title: Using Imagery on AWS S3
      URL: https://github.com/JaneliaSciComp/open-data-flylight/blob/master/tutorials/Using_imagery_on_AWS_S3.ipynb
      AuthorName: Rob Svirskas
  Tools & Applications:
    - Title: FlyLight Project Website
      URL: https://www.janelia.org/project-team/flylight
      AuthorName: Geoffrey Meissner
    - Title: Fly Light Split-GAL4 Driver Collection
      URL: http://splitgal4.janelia.org/cgi-bin/splitgal4.cgi
      AuthorName: Rob Svirskas
    - Title: Color Depth Search Fiji Plugin
      URL: https://github.com/JaneliaSciComp/ColorMIP_Mask_Search
      AuthorName: Hideo Otsuna
    - Title: NeuronBridge
      URL: https://neuronbridge.janelia.org
      AuthorName: Jody Clements, Rob Svirskas, Hideo Otsuna, Cristian Goina, Konrad Rokicki
  Publications:
    - Title: A GAL4-Driver Line Resource for Drosophila Neurobiology
      URL: https://doi.org/10.1016/j.celrep.2012.09.011
      AuthorName: Jenett, A., Rubin, G. M., Ngo, T., Shepherd, D., Murphy, C., Dionne, H., Pfeiffer, B. D., Cavallaro, A., Hall, D., Jeter, J., Iyer, N., Fetter, D., Hausenfluck, J. H., Peng, H., Trautman, E. T., Svirskas, R. R., Myers, E. W., Iwinski, Z. R., Aso, Y., DePasquale, G. M., Enos, A., Hulamm, P., Lam, S. C. B., Li, H., Laverty, T. R., Long, F., Qu, L., Murphy, S. D., Rokicki, K., Safford, T., Shaw, K., Simpson, J. H., Sowell, A., Tae, S., Yu, Y., & Zugates, C. T. 
    - Title: The neuronal architecture of the mushroom body provides a logic for associative learning
      URL: https://doi.org/10.7554/eLife.04577
      AuthorName: Aso, Y., Hattori, D., Yu, Y., Johnston, R. M., Iyer, N. A., Ngo, T., Dionne, H., Abbott, L., Axel, R., Tanimoto, H., & Rubin, G. M. 
    - Title: "Color depth MIP mask search: a new tool to expedite Split-GAL4 creation"
      URL: https://doi.org/10.1101/318006
      AuthorName: Otsuna, H., Ito, M., & Kawase, T. 
    - Title: An unbiased template of the Drosophila brain and ventral nerve cord
      URL: https://doi.org/10.1101/376384
      AuthorName: Bogovic, J.A., Otsuna, H., Heinrich, L., Ito, M., Jeter, J., Meissner, G., Nern, A., Colonell, J., Malkesman, O., Ito, K., & Saalfeld, S.