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Shiny #28

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LucasSchmidt97 opened this issue Oct 10, 2017 · 9 comments

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enhancement R refactoring

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LucasSchmidt97 commented Oct 10, 2017 •

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tutorials shiny https://shiny.rstudio.com/tutorial/
- hello world shiny app
dat files to rdata (bfabric) https://fgcz-bfabric.uzh.ch/bfabric/userlab/show-application.html?applicationId=155&tab=details
2 mascot dat files (rdata) input

LucasSchmidt97 self-assigned this

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LucasSchmidt97 commented Oct 10, 2017 •

edited

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build a diff function which shows where the spectra differ and mark it in the plot

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LucasSchmidt97 commented Oct 11, 2017 •

edited

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sorted mascot score

R> idx.score <- order(as.numeric(protViz:::.get_q_peptide(F225712,
attribute = 'pep_score')), decreasing = TRUE)
R> plot(pep_score[idx.score])

color (green and dark green)
xlim (0, 2000)
slider for zooming on the x-axis

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LucasSchmidt97 commented Oct 16, 2017 •

edited

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spectrum index (+10/-10)
y Scala same (DOESN'T WORK because bug in ProtViz)
scaling of display for all resolutions
ions diff like mz diff
x scale with values
peptide sequence (behind mascot score)

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LucasSchmidt97 commented Oct 16, 2017

add more info about the Spectra (query number, etc)

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LucasSchmidt97 commented Oct 16, 2017

slider/config for itol and other parameters in peakplot

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LucasSchmidt97 commented Oct 16, 2017

show Delta masses between peaks to see differences

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LucasSchmidt97 commented Oct 16, 2017

Fix checkboxgroup bug

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LucasSchmidt97 commented Nov 7, 2017

Shiny app runs and is useful/works, but some bugs occur because of the data differences.

LucasSchmidt97 added enhancement R labels

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LucasSchmidt97 commented Nov 17, 2017 •

edited

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Update shiny app because of new R interface

LucasSchmidt97 added the refactoring label

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