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[doc] and version to .24
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wolski committed Oct 28, 2020
1 parent 5cde185 commit 6fe1b22
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30 changes: 15 additions & 15 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ Package: SRMService
Type: Package
Title: Report Quantitative Mass Spectrometry Data
Date: 2018-09-10
Version: 0.1.9.23
Version: 0.1.9.24
Authors@R: c(person("Witold", "Wolski", email = "[email protected]", role = c("aut", "cre")),
person("Jonas", "Grossmann", email = "[email protected]", role = c("aut")),
person("Christian", "Panse", email = "[email protected]", role = c("aut")))
Expand Down Expand Up @@ -38,14 +38,23 @@ Imports:
usethis,
yaml
Suggests:
missForest
missForest,
testthat,
ggplot2,
knitr,
readxl,
MSqRob
Remotes:
protViz/quantable,
statOmics/MSqRob
License: GPL
LazyData: TRUE
URL: https://github.com/protViz/SRMService
BugReports: https://github.com/protViz/SRMService/issues
Repository: CRAN
RoxygenNote: 6.1.1
Collate:
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Collate:
'A_dataset_docu.R'
'RequiredColumns.R'
'eb.fit.R'
Expand All @@ -64,14 +73,5 @@ Collate:
'readMaxQuant.R'
'transitionCorrelations.R'
'zzz.R'
Suggests:
testthat,
ggplot2,
knitr,
readxl,
MSqRob
Remotes:
protViz/quantable,
protViz/bibliospec,
statOmics/MSqRob
VignetteBuilder: knitr
Depends:
R (>= 2.10)
4 changes: 2 additions & 2 deletions R/PrepareRmdAnalysisEnv.R
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Expand Up @@ -36,8 +36,8 @@ RMD_MQ_Quant_2GrpAnalysis <- function(workdir = getwd()){
.scriptCopyHelperVec(c("/RunScripts/Run_MQ_QuantTwoGroupAnalysis.R",
"/doc/Grp2Analysis.Rmd",
"/doc/bibliography.bib",
"/doc/Grp2Analysis_Empty.Rmd_t",
"/doc/Grp2Analysis_MissingInOneCondition.Rmd_t"), workdir = workdir )
"/doc/Grp2Analysis_MissingInOneCondition.Rmd",
"/doc/Empty.Rmd"), workdir = workdir )
}

#' copies the RMD and Run files for 2 grp analysis based on a PD (protein discoverer) in your working directory.
Expand Down
121 changes: 116 additions & 5 deletions man/Annotation.Rd

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3 changes: 1 addition & 2 deletions man/Grp2Analysis-class.Rd

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12 changes: 9 additions & 3 deletions man/MQtoMSstatsFormat.Rd

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129 changes: 116 additions & 13 deletions man/ProteinTableR6.Rd

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