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index.php
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<!DOCTYPE html>
<html lang="en">
<head>
<?php
readfile("./html/header.html");
include 'src/php/utils.php';
?>
</head>
<body>
<?php
$currentPage = '';
include './html/navbar.php';
?>
<div class="jumbotron">
<div class="container text-center">
<h1>Rhapsody</h1>
predicting the impact of human missense variants <br>
based on proteins' sequence, structure and dynamics
</div>
</div>
<div class="container-fluid md-3 text-center">
<div class="row">
<div class="col-md"> </div>
<div class="col-md-8">
<!-- ANNOUNCEMENTS -->
<?php readfile("./announcements.html"); ?>
</div>
<div class="col-md"> </div>
</div>
<div class="row">
<div class="col-md py-2">
<a href="sat_mutagen.php" class="text-dark">
<h5><i>In silico</i> saturation mutagenesis</h5>
</a>
<small class="form-text text-muted px-5">
perform a complete scan of all possible 19 amino acid
substitutions at each site on a human sequence.
See example:
<a href="./results.php?id=example-sm">H-Ras</a>.
<?php faq_link('sm', 'more info...') ?>
</small>
<div class="p-3">
<a href="sat_mutagen.php">
<img src="./img/thumbnail-sm.png"
class="img-responsive border rounded" style="width:80%" alt="">
</a>
</div>
</div>
<div class="col-md py-2">
<a href="sat_mutagen.php?showCollapsable" class="text-dark">
<h5>Variants on custom PDB structure </h5>
</a>
<small class="form-text text-muted px-5">
perform saturation mutagenesis analysis on a specific conformer,
homology model or homologous structure (in case human structure is
not available).
<?php faq_link('noPDB', 'more info...') ?>
</small>
<div class="p-3">
<a href="sat_mutagen.php?showCollapsable">
<img src="./img/thumbnail-customPDB.png"
class="img-responsive border rounded" style="width:80%" alt="">
</a>
</div>
</div>
<div class="col-md py-2">
<a href="batch_query.php" class="text-dark">
<h5>Batch query of individual variants </h5>
</a>
<small class="form-text text-muted px-5">
obtain predictions for a batch of up to 10,000 individual
human missense variants from various protein sequences.
See an example
<a href="./results.php?id=example-bq">here</a>.
<?php faq_link('bq', 'more info...') ?>
</small>
<div class="p-3">
<a href="batch_query.php">
<img src="./img/thumbnail-bq.png"
class="img-responsive border rounded" style="width:80%" alt="">
</a>
</div>
</div>
</div>
</div>
<?php readfile("./html/footer.html"); ?>
<?php readfile("./html/js_src.html"); ?>
</body>
</html>