From 5e55c2056b6f48d6b75ff098fc463e6e694c3672 Mon Sep 17 00:00:00 2001 From: James Krieger Date: Mon, 25 Nov 2024 15:28:19 +0100 Subject: [PATCH] no double commenting --- prody/tests/database/test_pfam.py | 78 +++++++++++++++---------------- 1 file changed, 39 insertions(+), 39 deletions(-) diff --git a/prody/tests/database/test_pfam.py b/prody/tests/database/test_pfam.py index 7256ca8bd..3b288f523 100644 --- a/prody/tests/database/test_pfam.py +++ b/prody/tests/database/test_pfam.py @@ -49,18 +49,18 @@ # self.assertEqual(sorted(list(a.keys())), ['PF00060', 'PF01094', 'PF10613'], # 'searchPfam failed to return the right domain family IDs for AMPAR') -# # def testPdbIdChSingle(self): -# # """Test the outcome of a simple search scenario using a PDB ID -# # and chain ID to get the single domain protein TARP g8 from chain I.""" +# def testPdbIdChSingle(self): +# """Test the outcome of a simple search scenario using a PDB ID +# and chain ID to get the single domain protein TARP g8 from chain I.""" -# # a = searchPfam(self.queries[2]) +# a = searchPfam(self.queries[2]) -# # self.assertIsInstance(a, dict, -# # 'searchPfam failed to return a dict instance') +# self.assertIsInstance(a, dict, +# 'searchPfam failed to return a dict instance') -# # self.assertEqual(sorted(list(a.keys())), -# # ['PF00822', 'PF13903'], -# # 'searchPfam failed to return the right domain family IDs for TARP') +# self.assertEqual(sorted(list(a.keys())), +# ['PF00822', 'PF13903'], +# 'searchPfam failed to return the right domain family IDs for TARP') # @classmethod # def tearDownClass(self): @@ -93,18 +93,18 @@ # self.assertTrue(os.path.exists(b)) -# # def testSeed(self): -# # """Test the outcome of fetching the domain MSA for claudins -# # with the alignment type argument set to seed""" +# def testSeed(self): +# """Test the outcome of fetching the domain MSA for claudins +# with the alignment type argument set to seed""" -# # b = fetchPfamMSA(self.query, "seed") +# b = fetchPfamMSA(self.query, "seed") -# # self.assertIsInstance(b, str, -# # 'fetchPfamMSA failed to return a str instance') +# self.assertIsInstance(b, str, +# 'fetchPfamMSA failed to return a str instance') -# # self.assertEqual(b, 'PF00822_seed.sth') +# self.assertEqual(b, 'PF00822_seed.sth') -# # self.assertTrue(os.path.exists(b)) +# self.assertTrue(os.path.exists(b)) # def testFolder(self): # """Test the outcome of fetching the domain MSA for claudins @@ -155,21 +155,21 @@ # 'parsePfamPDBs failed to return a list of length 5') -# # def testUniprotDefault(self): -# # """Test the outcome of parsing PDBs for a tiny family -# # of ABC class ATPase N-terminal domains (5 members) -# # with the Uniprot long ID and default parameters.""" +# def testUniprotDefault(self): +# """Test the outcome of parsing PDBs for a tiny family +# of ABC class ATPase N-terminal domains (5 members) +# with the Uniprot long ID and default parameters.""" -# # b = parsePfamPDBs(self.queries[1]) +# b = parsePfamPDBs(self.queries[1]) -# # self.assertIsInstance(b, list, -# # 'parsePfamPDBs failed to return a list instance') +# self.assertIsInstance(b, list, +# 'parsePfamPDBs failed to return a list instance') -# # self.assertIsInstance(b[0], Selection, -# # 'parsePfamPDBs failed to return a list of Selection instances') +# self.assertIsInstance(b[0], Selection, +# 'parsePfamPDBs failed to return a list of Selection instances') -# # self.assertEqual(len(b), 5, -# # 'parsePfamPDBs failed to return a list of length 5') +# self.assertEqual(len(b), 5, +# 'parsePfamPDBs failed to return a list of length 5') # def testMultiDomainDefault(self): @@ -188,21 +188,21 @@ # self.assertEqual(b[0].getResnums()[0], 262, # 'parsePfamPDBs failed to return a first Selection with first resnum 262') -# # def testMultiDomainStart1(self): -# # """Test the outcome of parsing PDBs using a V-type proton ATPase subunit S1, -# # which has two domains but few relatives. Using start=1 should be like default and -# # return Selection objects containing the first domain.""" +# def testMultiDomainStart1(self): +# """Test the outcome of parsing PDBs using a V-type proton ATPase subunit S1, +# which has two domains but few relatives. Using start=1 should be like default and +# return Selection objects containing the first domain.""" -# # b = parsePfamPDBs(self.queries[2], start=1) +# b = parsePfamPDBs(self.queries[2], start=1) -# # self.assertIsInstance(b, list, -# # 'parsePfamPDBs failed to return a list instance') +# self.assertIsInstance(b, list, +# 'parsePfamPDBs failed to return a list instance') -# # self.assertIsInstance(b[0], Selection, -# # 'parsePfamPDBs failed to return a list of Selection instances') +# self.assertIsInstance(b[0], Selection, +# 'parsePfamPDBs failed to return a list of Selection instances') -# # self.assertEqual(b[0].getResnums()[0], 262, -# # 'parsePfamPDBs failed to return a first Selection with first resnum 262') +# self.assertEqual(b[0].getResnums()[0], 262, +# 'parsePfamPDBs failed to return a first Selection with first resnum 262') # def testMultiDomainStart2(self): # """Test the outcome of parsing PDBs using a V-type proton ATPase subunit S1,