conf.py

# -*- coding: utf-8 -*-

import os
import sys
import glob
import time

try:
    exec(open('ProDy/docs/conf.py').read())
except IOError:
    exec(open('manual/conf.py').read())

sys.path.append(os.path.abspath('manual/sphinxext'))
              #'sphinxcontrib.googleanalytics',
              #'ipython_console_highlighting',
              #'ipython_directive']
extensions = [ 'sphinx.ext.todo',
               'sphinx.ext.autodoc',
               'sphinx.ext.doctest',
               'sphinx.ext.coverage',
               'sphinx.ext.extlinks',
               'sphinx.ext.graphviz',
               'sphinx.ext.ifconfig',
               'sphinx.ext.viewcode',
               'sphinx.ext.intersphinx',
               'sphinx.ext.inheritance_diagram',
               'matplotlib.sphinxext.mathmpl',
               'matplotlib.sphinxext.only_directives',
	           'IPython.sphinxext.ipython_directive' ,
	           'IPython.sphinxext.ipython_console_highlighting',
	           'googleanalytics'] 

exclude_patterns.append('ProDy')
exclude_patterns.append('DruGUI')
exclude_patterns.append('tutorials/template')
exclude_patterns.extend(glob.glob('tutorials/**/acknowledgments.rst'))
templates_path = ['_template']
source_suffix = '.rst'
master_doc = 'contents'

# not needed when building the full website
intersphinx_mapping.pop('prodywebsite')

project = u'ProDy'
copyright = u'2010-2015, University of Pittsburgh'

# -- Options for HTML output ---------------------------------------------------

html_favicon = '_static/favicon.ico'

html_additional_pages = {
    'index': 'prody.html',
    'nmwiz/index': 'nmwiz.html',
    'evol/index': 'evol.html',
    'signdy/index': 'signdy.html',
    'memanm/index': 'memanm.html',
    'prs/index': 'prs.html',
    'drugui/index': 'drugui.html',
    'comd/index' : 'comd.html',
    'downloads/index': 'downloads.html',
    'tutorials/index': 'tutorials.html',
    'statistics/index': 'statistics.html',
    'mechstiff/index' : 'mechstiff.html',
    'analytics/index' : 'analytics.html',
    'workshop/index' : 'workshop.html',
    'pharmmaker/index' : 'pharmmaker.html',
    'cryody/index': 'cryody.html',
    'essa/index': 'essa.html',
    'clustenmd/index': 'clustenmd.html',
    'watfinder/index': 'watfinder.html',
    'insty/index': 'insty.html',
    'scipion/index': 'scipion.html'
}

html_sidebars = {
    '**': ['toolbox.html', 'releasenotes.html', 'howtocite.html'],
    'tutorials/drugui_tutorial/**': ['toolbox.html', 'citedrugui.html'],
    'tutorials/nmwiz_tutorial/**': ['toolbox.html', 'howtocite.html']
}

# -- Options for LaTeX output --------------------------------------------------
latex_logo = '_static/logo.png'

lines = (line for line in rst_epilog.split('\n')
         if ('_Tut' not in line and '_NMW' not in line))
rst_epilog = '\n'.join(lines)