Singularity.0.919

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 0.919

%post
  ## Download build prerequisites
  apt-get update
  apt-get -y install g++ gcc libbz2-dev libcurl4 libcurl4-openssl-dev libhts2 libhts-dev libssl-dev libzip4 libzip-dev make wget

  cd /opt
  wget https://github.com/ANGSD/angsd/archive/0.919.tar.gz
  tar -xzf 0.919.tar.gz
  cd angsd-0.919
  make
  install -dm0755 /usr/local/bin
  install -Dm0755 angsd /usr/local/bin
  cd misc
  install -Dm0755 thetaStat realSFS /usr/local/bin

  ## Cleanup
  apt-get -y autoremove g++ gcc libcurl4-openssl-dev libhts-dev libssl-dev libzip-dev make wget
  apt-get -y clean all
  rm -rf /opt/*

%runscript
  exec angsd "$@"