ds003346-mriqc: "The 'in_file' trait of a _ReadSidecarJSONInputSpec instance must be a path like object or string representing an existing file"

[jbwexler]

For most subjects:

Traceback (most recent call last):
File "/opt/conda/bin/mriqc", line 8, in
sys.exit(main())
File "/opt/conda/lib/python3.9/site-packages/mriqc/cli/run.py", line 168, in main
mriqc_wf.run(**_plugin)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/workflows.py", line 628, in run
execgraph = generate_expanded_graph(deepcopy(flatgraph))
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/utils.py", line 1188, in generate_e
xpanded_graph
return _remove_nonjoin_identity_nodes(graph_in)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/utils.py", line 847, in _remove_non
join_identity_nodes
_remove_identity_node(graph, node)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/utils.py", line 875, in _remove_ide
ntity_node
_propagate_root_output(graph, node, field, connections)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/utils.py", line 914, in propagate
root_output
destnode.set_input(inport, value)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 312, in set_input
setattr(self.inputs, parameter, deepcopy(val))
File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in
validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in
validate
self.error(objekt, name, str(value))
File "/opt/conda/lib/python3.9/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'in_file' trait of a ReadSidecarJSONInputSpec instance must be a pat
hlike object or string representing an existing file, but a value of '/scratch1/03201/jbwexler/openneuro
derivatives/derivatives/mriqc/ds003346-mriqc/sourcedata/raw/sub-011/dwi/sub-011_dwi.nii.gz' <class 'str'>
was specified.