ds003540-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node ICA."

[jbwexler]

For 6/32 subjects.

Node: mriqc_wf.funcMRIQC.ICA
Working directory: /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/in_file..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/ICA

Node inputs:

ICs =
approach =
args =
bg_image =
bg_threshold =
compress_report = False
cov_weight =
dim =
dim_est =
environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
epsilon =
epsilonS =
in_files =
log_power =
mask =
max_restart =
maxit =
migp =
migpN =
migp_factor =
migp_shuffle =
mix =
mm_thresh =
no_bet = True
no_mask = True
no_mm = True
non_linearity =
num_ICs =
out_all =
out_dir =
out_mean =
out_orig =
Node: mriqc_wf.funcMRIQC.ICA
Working directory: /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/in_file..scratch1..03201..jbwexler..openn
euro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/ICA

Node inputs:

ICs =
approach =
args =
bg_image =
bg_threshold =
compress_report = False
cov_weight =
dim =
dim_est =
environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
epsilon =
epsilonS =
in_files =
log_power =
mask =
max_restart =
maxit =
migp =
migpN =
migp_factor =
migp_shuffle =
mix =
mm_thresh =
no_bet = True
no_mask = True
no_mm = True
non_linearity =
num_ICs =
out_all =
out_dir =
out_mean =
out_orig =
out_pca =
out_report = melodic_reportlet.svg
out_stats =
out_unmix =
out_white =
output_type = NIFTI_GZ
pbsc =
rem_cmp =
remove_deriv =
report =
report_maps =
report_mask =
s_con =
s_des =
sep_vn =
sep_whiten =
smode =
t_con =
t_des =
tr_sec =
update_mask =
var_norm =

Traceback (most recent call last):
File "/opt/conda/lib/python3.9/site-packages/mriqc/engine/plugin.py", line 60, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
result = self._run_interface(execute=True)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
return self._run_command(execute)
File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node ICA.

Cmdline:
melodic -i /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/in_file..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/sanitize/sub-13_task-rest_acq-MB3PA_bold_valid.nii.gz --nobet --nomask --no_mm -o /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/in_file..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/ICA
Stdout:

Stderr:

Traceback:
Traceback (most recent call last):
File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/base/core.py", line 399, in run
runtime = self._post_run_hook(runtime)
File "/opt/conda/lib/python3.9/site-packages/niworkflows/interfaces/reportlets/segmentation.py", line 169, in _post_run_hook
self._generate_report()
File "/opt/conda/lib/python3.9/site-packages/niworkflows/interfaces/reportlets/segmentation.py", line 184, in _generate_report
plot_melodic_components(
File "/opt/conda/lib/python3.9/site-packages/niworkflows/viz/utils.py", line 675, in plot_melodic_components
titlefmt(id=i + 1, noise=" [noise]" * is_noise, var=stats[i, 1]),
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed