From d76e457f4c2f7f2d865f5e125f0cecca45c488a2 Mon Sep 17 00:00:00 2001 From: Kennan LeJeune Date: Thu, 14 May 2020 16:45:56 -0500 Subject: [PATCH 1/3] fix requirements & dependencies, ignore environment config --- .gitignore | 1 + requirements.txt | 78 ++++++++++++++++++++++++++++++++++++------------ 2 files changed, 60 insertions(+), 19 deletions(-) diff --git a/.gitignore b/.gitignore index a224e6b..07134f8 100644 --- a/.gitignore +++ b/.gitignore @@ -90,3 +90,4 @@ ENV/ # Rope project settings .ropeproject +.envrc diff --git a/requirements.txt b/requirements.txt index 14b5c6a..da4b0d2 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,20 +1,60 @@ -arrow==0.8.0 -biopython==1.68 -boto==2.46.1 +appdirs==1.4.4 +appnope==0.1.0 +arrow==0.15.6 +attrs==19.3.0 +backcall==0.1.0 +biopython==1.76 +bipython==0.1.2 +blessings==1.7 +boto==2.49.0 +boto3==1.13.10 +botocore==1.16.10 +bpython==0.19 bz2file==0.98 -ConfigArgParse==0.11.0 -gensim==0.13.2 -Logbook==1.0.0 -numpy==1.16 -pep8==1.7.0 -pluggy==0.4.0 -py==1.4.33 -pytest==3.0.7 -python-dateutil==2.6.0 -requests==2.20.0 -scipy==0.19.0 -six==1.10.0 -smart-open==1.5.1 -tox==2.7.0 -tox-pyenv==1.0.3 -virtualenv==15.1.0 +certifi==2020.4.5.1 +chardet==3.0.4 +ConfigArgParse==1.2.3 +curtsies==0.3.1 +decorator==4.4.2 +distlib==0.3.0 +docutils==0.15.2 +filelock==3.0.12 +gensim==3.8.3 +greenlet==0.4.15 +idna==2.9 +importlib-metadata==1.6.0 +ipython==7.14.0 +ipython-genutils==0.2.0 +jedi==0.17.0 +jmespath==0.10.0 +Logbook==1.5.3 +more-itertools==8.2.0 +numpy==1.18.4 +packaging==20.3 +parso==0.7.0 +pep8==1.7.1 +pexpect==4.8.0 +pickleshare==0.7.5 +pluggy==0.13.1 +prompt-toolkit==3.0.5 +ptyprocess==0.6.0 +py==1.8.1 +Pygments==2.6.1 +pyparsing==2.4.7 +pytest==5.4.2 +python-dateutil==2.8.1 +pyzmq==19.0.1 +requests==2.23.0 +s3transfer==0.3.3 +scipy==1.4.1 +six==1.14.0 +smart-open==2.0.0 +toml==0.10.1 +tox==3.15.0 +tox-pyenv==1.1.0 +traitlets==4.3.3 +urllib3==1.25.9 +urwid==2.1.0 +virtualenv==20.0.20 +wcwidth==0.1.9 +zipp==3.1.0 From ae99b997caf1368ee15836b9030e4b9843d3b2b6 Mon Sep 17 00:00:00 2001 From: Kennan LeJeune Date: Thu, 14 May 2020 17:08:27 -0500 Subject: [PATCH 2/3] fix python2 requirements --- requirements-python2.txt | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 requirements-python2.txt diff --git a/requirements-python2.txt b/requirements-python2.txt new file mode 100644 index 0000000..3edf991 --- /dev/null +++ b/requirements-python2.txt @@ -0,0 +1,23 @@ +arrow==0.15.6 +backports.functools-lru-cache==1.6.1 +biopython==1.76 +boto3==1.13.10 +botocore==1.16.10 +bz2file==0.98 +certifi==2020.4.5.1 +chardet==3.0.4 +ConfigArgParse==1.2.3 +docutils==0.15.2 +futures==3.3.0 +gensim==3.8.3 +idna==2.9 +jmespath==0.10.0 +Logbook==1.5.3 +numpy==1.16.1 +python-dateutil==2.8.1 +requests==2.23.0 +s3transfer==0.3.3 +scipy==1.2.3 +six==1.14.0 +smart-open==1.10.1 +urllib3==1.25.9 From 311aae98d3e4297a982f04e9074814dc2fde3d6a Mon Sep 17 00:00:00 2001 From: Kennan LeJeune Date: Fri, 5 Jun 2020 13:47:59 -0500 Subject: [PATCH 3/3] Update requirements.txt removed a few dependencies that were tied to my environment settings --- requirements.txt | 34 ++++++---------------------------- 1 file changed, 6 insertions(+), 28 deletions(-) diff --git a/requirements.txt b/requirements.txt index da4b0d2..a8c1102 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,49 +1,30 @@ appdirs==1.4.4 -appnope==0.1.0 arrow==0.15.6 attrs==19.3.0 -backcall==0.1.0 biopython==1.76 -bipython==0.1.2 -blessings==1.7 boto==2.49.0 -boto3==1.13.10 -botocore==1.16.10 -bpython==0.19 +boto3==1.13.23 +botocore==1.16.23 bz2file==0.98 certifi==2020.4.5.1 chardet==3.0.4 ConfigArgParse==1.2.3 -curtsies==0.3.1 -decorator==4.4.2 distlib==0.3.0 docutils==0.15.2 filelock==3.0.12 gensim==3.8.3 -greenlet==0.4.15 idna==2.9 -importlib-metadata==1.6.0 -ipython==7.14.0 -ipython-genutils==0.2.0 -jedi==0.17.0 jmespath==0.10.0 Logbook==1.5.3 -more-itertools==8.2.0 -numpy==1.18.4 -packaging==20.3 -parso==0.7.0 +more-itertools==8.3.0 +numpy==1.18.1 +packaging==20.4 pep8==1.7.1 -pexpect==4.8.0 -pickleshare==0.7.5 pluggy==0.13.1 -prompt-toolkit==3.0.5 -ptyprocess==0.6.0 py==1.8.1 -Pygments==2.6.1 pyparsing==2.4.7 pytest==5.4.2 python-dateutil==2.8.1 -pyzmq==19.0.1 requests==2.23.0 s3transfer==0.3.3 scipy==1.4.1 @@ -52,9 +33,6 @@ smart-open==2.0.0 toml==0.10.1 tox==3.15.0 tox-pyenv==1.1.0 -traitlets==4.3.3 urllib3==1.25.9 -urwid==2.1.0 virtualenv==20.0.20 -wcwidth==0.1.9 -zipp==3.1.0 +wcwidth==0.2.3