From 835651a01c98fa1d8241771a32d05c6723e6f96c Mon Sep 17 00:00:00 2001 From: "Rutherford, Cameron" Date: Sun, 5 Nov 2023 11:44:28 -0500 Subject: [PATCH 1/7] Add working devcontainer and empty jupyter notebook. --- .devcontainer/Dockerfile | 39 +- .../create_dockerfile_devcontainer.sh | 125 ++ .devcontainer/devcontainer.json | 4 +- .gitignore | 2 +- docs/devcontainer/mpi4py-tutorial.ipynb | 1549 +++++++++++++++++ docs/devcontainer/tutorial.ipynb | 502 +++--- docs/devcontainer/viz-tutorial.ipynb | 521 ++++++ viz/backend/requirements.txt | Bin 2715 -> 2703 bytes viz/package.json | 102 +- 9 files changed, 2564 insertions(+), 280 deletions(-) create mode 100755 .devcontainer/create_dockerfile_devcontainer.sh create mode 100644 docs/devcontainer/mpi4py-tutorial.ipynb create mode 100644 docs/devcontainer/viz-tutorial.ipynb diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index aa641cd9..484d07b8 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -16,6 +16,7 @@ RUN mkdir /opt/spack-environment \ && echo ' - ipopt@3.12.10+coinhsl~mumps+metis' \ && echo ' - coinhsl@2019.05.21+blas' \ && echo ' - py-jupyterlab' \ +&& echo ' - py-ipyparallel' \ && echo ' concretizer:' \ && echo ' unify: true' \ && echo ' reuse: true' \ @@ -28,6 +29,8 @@ RUN mkdir /opt/spack-environment \ && echo ' - openmpi' \ && echo ' zlib-api:' \ && echo ' - zlib' \ +&& echo ' zlib-ng:' \ +&& echo ' buildable: false' \ && echo ' config:' \ && echo ' install_tree: /opt/software' \ && echo ' view: /opt/views/view') > /opt/spack-environment/spack.yaml @@ -35,8 +38,23 @@ RUN mkdir /opt/spack-environment \ # This is manual, and required to build Ipopt COPY coinhsl-archive-2019.05.21.tar.gz /opt/spack-environment/coinhsl-archive-2019.05.21.tar.gz +# Find external packages +RUN cd /opt/spack-environment && spack env activate . && spack external find --all + # Do this separate of install to cache keys... -RUN spack mirror add develop https://binaries.spack.io/develop && spack buildcache keys --install --trust +RUN cd /opt/spack-environment && spack env activate . && spack mirror add develop https://binaries.spack.io/develop && spack buildcache keys --install --trust && spack concretize -f && spack mirror create -a + +# Install Ipopt w/ CoinHSL (and other deps) in stages to cache builds +RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast ipopt + +# Install PETSc +RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast petsc + +# Install py-jupyterlab +RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast py-jupyterlab + +# Install py-ipyparallel +RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast py-ipyparallel # Install the software, remove unnecessary deps RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast && spack gc -y @@ -72,7 +90,7 @@ RUN { \ RUN apt-get -yqq update && apt-get -yqq upgrade \ - && apt-get -yqq install gfortran \ + && apt-get -yqq install gfortran nodejs npm \ && rm -rf /var/lib/apt/lists/* ENTRYPOINT [ "/entrypoint.sh" ] CMD [ "/bin/bash" ] @@ -83,6 +101,19 @@ RUN echo "source /entrypoint.sh" >> /home/vscode/.bashrc # Install the Jupyter kernel RUN . /entrypoint.sh && \ python3 -m ipykernel install \ - --name py311-exago\ - --display-name ExaGO \ + --name py311-exago \ + --display-name "ExaGO" \ --prefix= + +# Install the mpi4py Jupyter kernel +RUN . /entrypoint.sh && \ + python3 -m ipykernel install \ + --name py311-mpi4py-exago \ + --display-name "ExaGO w/ MPI" \ + --prefix= + +# Make modifications that are necessary to run mpi4py in kernelspec +RUN sed -i 's/\"\/opt\/views\/view\/bin\/python3\"/\"mpiexec\", \"-n\", \"1\", \"\/opt\/views\/view\/bin\/python3\"/g' /usr/local/share/jupyter/kernels/py311-mpi4py-exago/kernel.json + +# Configure user for container +USER vscode diff --git a/.devcontainer/create_dockerfile_devcontainer.sh b/.devcontainer/create_dockerfile_devcontainer.sh new file mode 100755 index 00000000..2f2e285e --- /dev/null +++ b/.devcontainer/create_dockerfile_devcontainer.sh @@ -0,0 +1,125 @@ +#!/bin/bash +# Generates Dockerfile for use as Devcontainer... + +# Only necessary for HTTPS operations on PNNL VPN +# export HTTPS_PROXY=http://proxy01.pnl.gov:3128 && +# export https_proxy=http://proxy01.pnl.gov:3128 && + +# Get CoinHSL tarball if not present +if [ ! -f "./coinhsl-archive-2019.05.21.tar.gz" ]; then + echo "No coinhsl-archive-2019.05.21.tar.gz found - make sure to get your own license and copy it to this directory" + echo "Note that the tarball must be named coinhsl-archive-2019.05.21.tar.gz" + exit 1 +fi + +# Add read/execute permissions to CoinHSL tarball +chmod +rx ./coinhsl-archive-2019.05.21.tar.gz && + +# If "-f" flag passed, force rebuild +if [ "$1" == "-f" ]; then + echo "Forcing rebuild" && + rm -rf ~/.spack && + rm -rf ./spack && + rm -rf ./spack-env +fi + +# or no ./spack dir, force a rebuild +if [ ! -d "./tpl/spack/share" ]; then + echo "No spack submodule directory found, downloading spack" + git submodule update --init --recursive +fi + +export SPACK_PYTHON=$(which python3) && +# Setup spack +source ./tpl/spack/share/spack/setup-env.sh && + +# Create heredoc for spack.yaml with environment +cat > $(pwd)/spack.yaml < ./.devcontainer/Dockerfile + +# THIS ONLY WORKS ON MAC!!! - maybe get gsed wit brew working... +# Add Docker command before "# Install" that copies CoinHSL into image +sed -i "" "s|# Install the software|# This is manual, and required to build Ipopt\nCOPY coinhsl-archive-2019.05.21.tar.gz /opt/spack-environment/coinhsl-archive-2019.05.21.tar.gz\n\n# Install the software|" ./.devcontainer/Dockerfile + +# Find external packages +sed -i "" "s|# Install the software|# Find external packages\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack external find --all\n\n# Install the software|" ./.devcontainer/Dockerfile + +# Also trusts the build cache and create source mirror +sed -i "" "s|# Install the software|# Do this separate of install to cache keys...\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack mirror add develop https://binaries.spack.io/develop \&\& spack buildcache keys --install --trust \&\& spack concretize -f \&\& spack mirror create -a\n\n# Install the software|" ./.devcontainer/Dockerfile + +# Install Ipopt and packages in separate stages to cache builds +sed -i "" "s|# Install the software|# Install Ipopt w/ CoinHSL (and other deps) in stages to cache builds\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack install --fail-fast ipopt\n\n# Install the software|" ./.devcontainer/Dockerfile +sed -i "" "s|# Install the software|# Install PETSc \nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack install --fail-fast petsc\n\n# Install the software|" ./.devcontainer/Dockerfile +sed -i "" "s|# Install the software|# Install py-jupyterlab\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack install --fail-fast py-jupyterlab\n\n# Install the software|" ./.devcontainer/Dockerfile +sed -i "" "s|# Install the software|# Install py-ipyparallel\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack install --fail-fast py-ipyparallel\n\n# Install the software|" ./.devcontainer/Dockerfile + +# Configure environment for VSCode User in devcontainer +echo "# Make sure devcontainer user gets spack packages" >> ./.devcontainer/Dockerfile +echo "RUN echo \"source /entrypoint.sh\" >> /home/vscode/.bashrc" >> ./.devcontainer/Dockerfile + +# Finally install the Jupyter kernel +echo "" >> ./.devcontainer/Dockerfile +echo "# Install the Jupyter kernel" >> ./.devcontainer/Dockerfile +echo "RUN . /entrypoint.sh && \\" >> ./.devcontainer/Dockerfile +echo " python3 -m ipykernel install \\" >> ./.devcontainer/Dockerfile +echo " --name py311-exago \\" >> ./.devcontainer/Dockerfile +echo " --display-name \"ExaGO\" \\" >> ./.devcontainer/Dockerfile +echo " --prefix=$(which jupyter)" >> ./.devcontainer/Dockerfile + +# Install the mpi4py Jupyter kernel +echo "" >> ./.devcontainer/Dockerfile +echo "# Install the mpi4py Jupyter kernel" >> ./.devcontainer/Dockerfile +echo "RUN . /entrypoint.sh && \\" >> ./.devcontainer/Dockerfile +echo " python3 -m ipykernel install \\" >> ./.devcontainer/Dockerfile +echo " --name py311-mpi4py-exago \\" >> ./.devcontainer/Dockerfile +echo " --display-name \"ExaGO w/ MPI\" \\" >> ./.devcontainer/Dockerfile +echo " --prefix=$(which jupyter)" >> ./.devcontainer/Dockerfile + +# Modify mpi4py kernel to actually launch process with mpiexec +echo "" >> ./.devcontainer/Dockerfile +echo "# Make modifications that are necessary to run mpi4py in kernelspec" >> ./.devcontainer/Dockerfile +echo "RUN sed -i 's/\\\"\/opt\/views\/view\/bin\/python3\\\"/\\\"mpiexec\\\", \\\"-n\\\", \\\"1\\\", \\\"\/opt\/views\/view\/bin\/python3\\\"/g' /usr/local/share/jupyter/kernels/py311-mpi4py-exago/kernel.json" >> ./.devcontainer/Dockerfile + +# Make sure vscode user is correct +echo "" >> ./.devcontainer/Dockerfile +echo "# Configure user for container" >> ./.devcontainer/Dockerfile +echo "USER vscode" >> ./.devcontainer/Dockerfile diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index facd9a6e..34dcfff4 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -9,10 +9,12 @@ "ms-azuretools.vscode-docker", "github.vscode-github-actions", "ms-toolsai.jupyter", - "GitHub.copilot" + "GitHub.copilot", + "ms-vsliveshare.vsliveshare" ] } }, "workspaceFolder": "/home/app/", + "postCreateCommand": "cd /home/app/viz && export CXX=$(which gcc) && npm install", "workspaceMount": "source=${localWorkspaceFolder},target=/home/app/,type=bind,consistency=cached" } diff --git a/.gitignore b/.gitignore index d5f79fce..d572d225 100644 --- a/.gitignore +++ b/.gitignore @@ -5,7 +5,7 @@ install/* .ubuild.json *__pycache__* *nvblas.conf -spack-* +spack* .vscode/ coinhsl-* node_modules diff --git a/docs/devcontainer/mpi4py-tutorial.ipynb b/docs/devcontainer/mpi4py-tutorial.ipynb new file mode 100644 index 00000000..344c0946 --- /dev/null +++ b/docs/devcontainer/mpi4py-tutorial.ipynb @@ -0,0 +1,1549 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# ExaGO mpi4py Jupyter Tutorial\n", + "\n", + "We have a Python wrapper for ExaGO installed in this container through sapck. You can view the Dockerfile in `.devcontainer/Dockerfile`. See the Appendix for more details.\n", + "\n", + "This is different to the base tutorial in that we include some additional information about MPI configuration." + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ExaGO 1.6.0 built on Nov 9 2023\n", + "ExaGO 1.6.0 built on Nov 9 2023\n", + "ExaGO 1.6.0 built on Nov 9 2023\n", + "ExaGO 1.6.0 built on Nov 9 2023\n", + "ExaGO 1.6.0 built on Nov 9 2023\n" + ] + } + ], + "source": [ + "!mpirun -n 5 opflow --version" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Hello\n", + " from rank 0 out of 1 total ranks\n" + ] + } + ], + "source": [ + "# Unique to MPI configuration\n", + "print(f'Hello')\n", + "import mpi4py\n", + "mpi4py.rc.threads = False\n", + "from mpi4py import MPI\n", + "comm = MPI.COMM_WORLD\n", + "rank = comm.Get_rank()\n", + "size = comm.Get_size()\n", + "print(f'{comm} from rank {rank} out of {size} total ranks')" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/home/app/docs/devcontainer\n", + "/home/app\n" + ] + } + ], + "source": [ + "# Get pwd and change directory to where datafiles are\n", + "import os\n", + "print(f'{os.getcwd()}')\n", + "os.chdir('../..')\n", + "print(f'{os.getcwd()}')" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We need to run in a parallel cluster, save file to disk (or return in place), and then do something with the solution..." + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Starting 6 engines with \n", + "100%|██████████| 6/6 [00:05<00:00, 1.03engine/s]\n", + "Hello World from rank 0. total ranks=6. host=dfdb9932ea09 out of /home/app\n", + "Hello World from rank 1. total ranks=6. host=dfdb9932ea09 out of /home/app\n", + "Hello World from rank 2. total ranks=6. host=dfdb9932ea09 out of /home/app\n", + "Hello World from rank 3. total ranks=6. host=dfdb9932ea09 out of /home/app\n", + "Hello World from rank 4. total ranks=6. host=dfdb9932ea09 out of /home/app\n", + "Hello World from rank 5. total ranks=6. host=dfdb9932ea09 out of /home/app\n", + "Stopping engine(s): 1699501339\n", + "engine set stopped 1699501339: {'exit_code': 0, 'pid': 35617, 'identifier': 'ipengine-1699501338-ciod-1699501339-35554'}\n", + "Stopping controller\n", + "Controller stopped: {'exit_code': 0, 'pid': 35587, 'identifier': 'ipcontroller-1699501338-ciod-35554'}\n" + ] + } + ], + "source": [ + "# Hello world first:\n", + "import ipyparallel as ipp\n", + "\n", + "def mpi_example():\n", + " import os\n", + " from mpi4py import MPI\n", + " comm = MPI.COMM_WORLD\n", + " return f\"Hello World from rank {comm.Get_rank()}. total ranks={comm.Get_size()}. host={MPI.Get_processor_name()} out of {os.getcwd()}\"\n", + "\n", + "# request an MPI cluster with 24 engines\n", + "with ipp.Cluster(controller_ip=\"*\", engines=\"mpi\", n=6) as rc:\n", + " # get a broadcast_view on the cluster which is best\n", + " # suited for MPI style computation\n", + " view = rc.broadcast_view()\n", + " # run the mpi_example function on all engines in parallel\n", + " r = view.apply_sync(mpi_example)\n", + " # Retrieve and print the result from the engines\n", + " print(\"\\n\".join(r))\n", + "# at this point, the cluster processes have been shutdown" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/home/app\n", + "/home/app\n", + "Starting 4 engines with \n", + "100%|██████████| 4/4 [00:05<00:00, 1.48s/engine]\n", + "Stopping engine(s): 1699501347\n", + "engine set stopped 1699501347: {'exit_code': 59, 'pid': 35775, 'identifier': 'ipengine-1699501346-0x7o-1699501347-35554'}\n", + "Stopping controller\n", + "Controller stopped: {'exit_code': 0, 'pid': 35742, 'identifier': 'ipcontroller-1699501346-0x7o-35554'}\n" + ] + } + ], + "source": [ + "import ipyparallel as ipp\n", + "import os\n", + "print(f'{os.getcwd()}')\n", + "os.chdir('/home/app')\n", + "print(f'{os.getcwd()}')\n", + "\n", + "def run_exago():\n", + " from mpi4py import MPI\n", + " import exago\n", + " comm = MPI.COMM_WORLD\n", + " rank = comm.Get_rank()\n", + " exago.initialize(\"app\", comm)\n", + " opf = exago.OPFLOW()\n", + " opf.read_mat_power_data('./datafiles/case9/case9mod.m')\n", + " opf.solve()\n", + "\n", + " comm.barrier()\n", + "\n", + " if rank == 0:\n", + " # opf.print_solution()\n", + " opf.save_solution(exago.OutputFormat.JSON, 'solution')\n", + "\n", + " # exago.finalize()\n", + " comm.barrier()\n", + "\n", + "# request an MPI cluster with 24 engines\n", + "with ipp.Cluster(controller_ip=\"*\", engines=\"mpi\", n=4) as rc:\n", + " # get a broadcast_view on the cluster which is best\n", + " # suited for MPI style computation\n", + " view = rc.broadcast_view()\n", + " # run the mpi_example function on all engines in parallel\n", + " r = view.apply_sync(run_exago)" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{\n", + "\t\"casefile\": \"./datafiles/case9/case9mod.m\",\n", + "\t\"gicfile\": \"not given\",\n", + "\t\"nbranch\": 9,\n", + "\t\"ngen\": 3,\n", + "\t\"nbus\": 9,\n", + "\t\"KVlevels\": [\n", + "\t\t345.000000\n", + "\t],\n", + "\t\"casejsonfile\": \"solution.json\",\n", + "\t\"geojsondata\": {\n", + "\t\t\"type\": \"FeatureCollection\",\n", + "\t\t\"features\": [\n", + "\t\t\t{\n", + "\t\t\t\t\"type\": \"Feature\",\n", + "\t\t\t\t\"geometry\": {\n", + "\t\t\t\t\t\"type\": \"Point\",\n", + "\t\t\t\t\t\"coordinates\": [\n", + "\t\t\t\t\t\t-97.508469,\n", + "\t\t\t\t\t\t35.981918\n", + "\t\t\t\t\t]\n", + "\t\t\t\t},\n", + "\t\t\t\t\"properties\": {\n", + "\t\t\t\t\t\"elementtype\": \"SUBSTATION\",\n", + "\t\t\t\t\t\"NAME\": \"1\",\n", + "\t\t\t\t\t\"nbus\": 1,\n", + "\t\t\t\t\t\"KVlevels\": [\n", + "\t\t\t\t\t\t345.000000\n", + "\t\t\t\t\t],\n", + "\t\t\t\t\t\"bus\": [\n", + "\t\t\t\t\t\t{\n", + "\t\t\t\t\t\t\t\"elementtype\": \"bus\",\n", + "\t\t\t\t\t\t\t\"BUS_I\": 1,\n", + "\t\t\t\t\t\t\t\"VA\": 0.000000,\n", + "\t\t\t\t\t\t\t\"VM\": 1.099983,\n", + "\t\t\t\t\t\t\t\"BUS_NAME\": \" 1\",\n", + "\t\t\t\t\t\t\t\"VMIN\": 0.900000,\n", + "\t\t\t\t\t\t\t\"VMAX\": 1.100000,\n", + "\t\t\t\t\t\t\t\"BASE_KV\": 345.000000,\n", + "\t\t\t\t\t\t\t\"PD\": 0.000000,\n", + "\t\t\t\t\t\t\t\"QD\": 0.000000,\n", + "\t\t\t\t\t\t\t\"PDloss\": 0.000000,\n", + "\t\t\t\t\t\t\t\"QDloss\": 0.000000,\n", + "\t\t\t\t\t\t\t\"LAM_P\": 2102.907811,\n", + "\t\t\t\t\t\t\t\"LAM_Q\": 0.000000,\n", + "\t\t\t\t\t\t\t\"ngen\": 1,\n", + "\t\t\t\t\t\t\t\"gen\": [\n", + 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Should be fine to run SCOPFLOW and more complex applications, and then you can loop over ExaGO runs like this all natively to Python!" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## MPI Execution Options\n", + "\n", + "There are quite a few ways to run MPI backed code, and here are some notes on how I arrived at the above implementation." + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{\n", + " \"argv\": [\n", + " \"mpiexec\", \"-n\", \"1\", \"/opt/views/view/bin/python3\",\n", + " \"-m\",\n", + " \"ipykernel_launcher\",\n", + " \"-f\",\n", + " \"{connection_file}\"\n", + " ],\n", + " \"display_name\": \"ExaGO w/ MPI\",\n", + " \"language\": \"python\",\n", + " \"metadata\": {\n", + " \"debugger\": true\n", + " }\n", + "}" + ] + } + ], + "source": [ + "!cat /usr/local/share/jupyter/kernels/py311-mpi4py-exago/kernel.json" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Firstly we execute the ipykernel backend using MPI. This means all kernels are launched within a single rank MPI context, and MPI basics work.\n", + "\n", + "To run with more processes, we can either:\n", + "1. Use `!` in a Python block and just run with `mpiexec -n N` for the number of ranks\n", + " - This works, but I/O is clunky\n", + " - It becomes cumbersome to code dynamic high-level applications that re-run different sims based on returned output\n", + "1. Spawn an ipyparallel cluster\n", + " - https://ipyparallel.readthedocs.io/en/latest/reference/mpi.html \n", + " - you can start the cluster and connect to it, but these docs are a little confusing, as you start many processes\n", + " - Would be better to have it all be jupyter native\n", + " - https://kb.oakland.edu/uts/HPCJupyterMPI\n", + " - Inlcudes a much better Jupyter focused bit of docs around this\n", + "1. Use a different workflow engine, and find a tool\n", + "\n", + "While a workflow tool is a strong consideration for most high level applications, we are going to stick with 2. 1 and 3 would likely be custom to your use-case" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Appendix\n", + "\n", + "From https://github.com/mpi4py/mpi4py/issues/15#issuecomment-765658147, had to modify mpi4py init routines by hand - this was all due to a red-herring, but is interesting discussion." + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0.00s - Debugger warning: It seems that frozen modules are being used, which may\n", + "0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off\n", + "0.00s - to python to disable frozen modules.\n", + "0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to disable this validation.\n", + "Available kernels:\n", + " python3 /opt/views/view/share/jupyter/kernels/python3\n", + " py311-exago /usr/local/share/jupyter/kernels/py311-exago\n", + " py311-mpi4py-exago /usr/local/share/jupyter/kernels/py311-mpi4py-exago\n" + ] + } + ], + "source": [ + "!jupyter kernelspec list" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{\n", + " \"argv\": [\n", + " \"/opt/views/view/bin/python3\",\n", + " \"-m\",\n", + " \"ipykernel_launcher\",\n", + " \"-f\",\n", + " \"{connection_file}\"\n", + " ],\n", + " \"display_name\": \"ExaGO\",\n", + " \"language\": \"python\",\n", + " \"metadata\": {\n", + " \"debugger\": true\n", + " }\n", + "}" + ] + } + ], + "source": [ + "!cat /usr/local/share/jupyter/kernels/py311-exago/kernel.json" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "As you can see, we have some extra script in our dockerfile that slightly modifies the installed Jupyter kernel to use mpiexec when launching!" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Package Version\n", + "----------------------- ---------\n", + "aiohttp 3.8.4\n", + "aiosignal 1.3.1\n", + "anyio 3.6.2\n", + "argon2-cffi 21.3.0\n", + "argon2-cffi-bindings 21.2.0\n", + "asttokens 2.4.0\n", + "async-timeout 4.0.2\n", + "attrs 23.1.0\n", + "Babel 2.12.1\n", + "backcall 0.2.0\n", + "beautifulsoup4 4.12.2\n", + "bleach 6.0.0\n", + "blinker 1.6.2\n", + "certifi 2023.7.22\n", + "cffi 1.15.1\n", + "charset-normalizer 3.3.0\n", + "click 8.1.5\n", + "colorama 0.4.6\n", + "comm 0.1.4\n", + "config 0.5.1\n", + "dataclasses-json 0.5.9\n", + "debugpy 1.6.7\n", + "decorator 5.1.1\n", + "defusedxml 0.7.1\n", + "entrypoints 0.4\n", + "executing 1.2.0\n", + "fastjsonschema 2.16.3\n", + "Flask 2.3.2\n", + "Flask-Cors 4.0.0\n", + "frozenlist 1.4.0\n", + "gevent 23.7.0\n", + "greenlet 2.0.2\n", + "idna 3.4\n", + "iniconfig 2.0.0\n", + "ipykernel 6.23.1\n", + "ipyparallel 8.4.1\n", + "ipython 8.14.0\n", + "ipython-genutils 0.2.0\n", + "itsdangerous 2.1.2\n", + "jedi 0.18.2\n", + "jellyfish 0.11.2\n", + "Jinja2 3.1.2\n", + "json5 0.9.14\n", + "jsonschema 4.17.3\n", + "jupyter_client 8.2.0\n", + "jupyter_core 5.3.0\n", + "jupyter-server 1.21.0\n", + "jupyterlab 3.4.8\n", + "jupyterlab-pygments 0.2.2\n", + "jupyterlab_server 2.22.1\n", + "langchain 0.0.233\n", + "langsmith 0.0.5\n", + "MarkupSafe 2.1.3\n", + "marshmallow 3.19.0\n", + "marshmallow-enum 1.5.1\n", + "matplotlib-inline 0.1.6\n", + "mistune 2.0.5\n", + "mpi4py 3.1.4\n", + "multidict 6.0.4\n", + "mypy-extensions 1.0.0\n", + "nbclassic 1.0.0\n", + "nbclient 0.8.0\n", + "nbconvert 7.4.0\n", + "nbformat 5.8.0\n", + "nest-asyncio 1.5.6\n", + "notebook 6.5.4\n", + "notebook_shim 0.2.3\n", + "numexpr 2.8.4\n", + "numpy 1.25.0\n", + "openai 0.27.8\n", + "openapi-schema-pydantic 1.2.4\n", + "packaging 23.1\n", + "pandas 2.0.2\n", + "pandocfilters 1.5.0\n", + "parso 0.8.3\n", + "pexpect 4.8.0\n", + "pickleshare 0.7.5\n", + "pip 23.3.1\n", + "platformdirs 3.10.0\n", + "pluggy 1.0.0\n", + "prometheus-client 0.17.0\n", + "prompt-toolkit 3.0.38\n", + "psutil 5.9.5\n", + "psycopg2 2.9.6\n", + "ptyprocess 0.7.0\n", + "pure-eval 0.2.2\n", + "pycparser 2.21\n", + "pydantic 1.10.11\n", + "Pygments 2.16.1\n", + "pyrsistent 0.19.3\n", + "pytest 7.3.2\n", + "python-dateutil 2.8.2\n", + "pytz 2023.3\n", + "PyYAML 6.0\n", + "pyzmq 25.0.2\n", + "requests 2.31.0\n", + "Send2Trash 1.8.0\n", + "setuptools 68.0.0\n", + "shapely 2.0.1\n", + "six 1.16.0\n", + "sniffio 1.3.0\n", + "soupsieve 2.4.1\n", + "SQLAlchemy 2.0.18\n", + "stack-data 0.6.2\n", + "tenacity 8.2.2\n", + "terminado 0.17.1\n", + "tinycss2 1.2.1\n", + "tornado 6.3.3\n", + "tqdm 4.66.1\n", + "traitlets 5.9.0\n", + "typing_extensions 4.7.1\n", + "typing-inspect 0.9.0\n", + "tzdata 2023.3\n", + "urllib3 2.0.6\n", + "us 3.1.1\n", + "wcwidth 0.2.7\n", + "webencodings 0.5.1\n", + "websocket-client 1.6.3\n", + "Werkzeug 2.3.6\n", + "wheel 0.41.3\n", + "yarl 1.9.2\n", + "zope.event 4.6\n", + "zope.interface 5.4.0\n" + ] + } + ], + "source": [ + "!pip3 list" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "That's odd - ExaGO can import and run, but doesn't show up in pip. That's because we installed using Spack, and ExaGO is available directly through the `PYTHONPATH` environment variable.\n", + "\n", + "This is configured through `entrypoint.sh`, which is the last thing that happens in the configured `~/.bashrc`:" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + " fi; \\\n", + " fi`'\n", + " local lightblue='\\[\\033[1;34m\\]'\n", + " local removecolor='\\[\\033[0m\\]'\n", + " PS1=\"${userpart} ${lightblue}\\w ${gitbranch}${removecolor}\\$ \"\n", + " unset -f __bash_prompt\n", + "}\n", + "__bash_prompt\n", + "export PROMPT_DIRTRIM=4\n", + "source /entrypoint.sh\n" + ] + } + ], + "source": [ + "!cat ~/.bashrc | tail -n 10" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "#!/bin/sh\n", + ". /opt/spack-environment/activate.sh\n", + "exec \"$@\"\n" + ] + } + ], + "source": [ + "!cat /entrypoint.sh" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "export SPACK_ENV=/opt/spack-environment;\n", + "export SPACK_ENV_VIEW=default;\n", + "alias despacktivate='spack env deactivate';\n", + "export ACLOCAL_PATH=/opt/views/view/share/aclocal;\n", + "export CMAKE_PREFIX_PATH=/opt/views/view;\n", + "export C_INCLUDE_PATH=/opt/views/view/include;\n", + "export JUPYTERLAB_DIR=/opt/views/view/share/jupyter/lab;\n", + "export JUPYTER_PATH=/opt/views/view/share/jupyter;\n", + "export LD_LIBRARY_PATH=/opt/views/view/lib64:/opt/views/view/lib;\n", + "export LIBRARY_PATH=/opt/views/view/lib;\n", + "export MANPATH=/opt/views/view/share/man:/opt/views/view/man:;\n", + "export MPICC=/opt/views/view/bin/mpicc;\n", + "export MPICXX=/opt/views/view/bin/mpic++;\n", + "export MPIF77=/opt/views/view/bin/mpif77;\n", + "export MPIF90=/opt/views/view/bin/mpif90;\n", + "export PATH=/opt/views/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin;\n", + "export PETSC_ARCH=\"\";\n", + "export PETSC_DIR=/opt/views/view;\n", + "export PKG_CONFIG_PATH=/opt/views/view/lib64/pkgconfig:/opt/views/view/lib/pkgconfig:/opt/views/view/share/pkgconfig;\n", + "export PYTHONPATH=/opt/views/view/lib/python3.11/site-packages;\n" + ] + } + ], + "source": [ + "!cat /opt/spack-environment/activate.sh" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/opt/views/view/lib/python3.11/site-packages\n" + ] + } + ], + "source": [ + "!echo $PYTHONPATH" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "total 748\n", + "drwxr-xr-x 168 root root 12288 Nov 9 01:24 .\n", + "drwxr-xr-x 39 root root 4096 Nov 9 01:24 ..\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 Babel-2.12.1.dist-info\n", + "drwxr-xr-x 11 root root 4096 Nov 9 01:24 IPython\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 Jinja2-3.1.2.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 MarkupSafe-2.1.3.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 Pygments-2.16.1.dist-info\n", + "lrwxrwxrwx 1 root root 139 Nov 9 01:24 README.txt -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/python-3.11.6-ybsi7tlnssr3m4h3eqrzq6tyxdcsr2n7/lib/python3.11/site-packages/README.txt\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 Send2Trash-1.8.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 __pycache__\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 _argon2_cffi_bindings\n", + "lrwxrwxrwx 1 root root 175 Nov 9 01:24 _cffi_backend.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-cffi-1.15.1-ns7kiujztzymljhmkwceej66qntnjlcr/lib/python3.11/site-packages/_cffi_backend.cpython-311-x86_64-linux-gnu.so\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 _distutils_hack\n", + "lrwxrwxrwx 1 root root 158 Nov 9 01:24 _pyrsistent_version.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pyrsistent-0.19.3-ptruwnt5v52i3udbb6cbvhq5oeqn7dox/lib/python3.11/site-packages/_pyrsistent_version.py\n", + "drwxr-xr-x 9 root root 4096 Nov 9 01:24 _pytest\n", + "drwxr-xr-x 7 root root 4096 Nov 9 01:24 anyio\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 anyio-3.6.2.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 argon2\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 argon2_cffi-21.3.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 argon2_cffi_bindings-21.2.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 asttokens\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 asttokens-2.4.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 attr\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 attrs\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 attrs-23.1.0.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 9 01:24 babel\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 backcall\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 backcall-0.2.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 beautifulsoup4-4.12.2.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 bleach\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 bleach-6.0.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 bs4\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 certifi\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 certifi-2023.7.22.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 cffi\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 cffi-1.15.1.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 charset_normalizer\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 charset_normalizer-3.3.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 comm\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 comm-0.1.4.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 9 01:24 dateutil\n", + "drwxr-xr-x 8 root root 4096 Nov 9 01:24 debugpy\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 debugpy-1.6.7.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 decorator-5.1.1.dist-info\n", + "lrwxrwxrwx 1 root root 146 Nov 9 01:24 decorator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-decorator-5.1.1-y6omagu7er3rjtyisfdajw5upayicgxe/lib/python3.11/site-packages/decorator.py\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 defusedxml\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 defusedxml-0.7.1.dist-info\n", + "lrwxrwxrwx 1 root root 160 Nov 9 01:24 distutils-precedence.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-setuptools-68.0.0-ceuwjz4g6i5jxk4babjsbh6oxmqggbba/lib/python3.11/site-packages/distutils-precedence.pth\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 entrypoints-0.4.dist-info\n", + "lrwxrwxrwx 1 root root 148 Nov 9 01:24 entrypoints.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-entrypoints-0.4-d7yae57isrvmfonytpxzfwt2zqj3dz3r/lib/python3.11/site-packages/entrypoints.py\n", + "lrwxrwxrwx 1 root root 164 Nov 9 01:24 exago.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/exago-1.6.0-odeio72qx5b7od5yh44oxq52q4otbuz7/lib/python3.11/site-packages/exago.cpython-311-x86_64-linux-gnu.so\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 executing\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 executing-1.2.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 fastjsonschema\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 fastjsonschema-2.16.3.dist-info\n", + "drwxr-xr-x 9 root root 4096 Nov 9 01:24 gevent\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 gevent-23.7.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 greenlet\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 greenlet-2.0.2.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 idna\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 idna-3.4.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 iniconfig\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 iniconfig-2.0.0.dist-info\n", + "drwxr-xr-x 9 root root 4096 Nov 9 01:24 ipykernel\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 ipykernel-6.23.1.dist-info\n", + "lrwxrwxrwx 1 root root 156 Nov 9 01:24 ipykernel_launcher.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-ipykernel-6.23.1-lkt3rawpdvlxrgc6gzcb7ikhvnfe6mq2/lib/python3.11/site-packages/ipykernel_launcher.py\n", + "drwxr-xr-x 12 root root 4096 Nov 9 01:24 ipyparallel\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 ipyparallel-8.4.1.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 ipython-8.14.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 ipython_genutils\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 ipython_genutils-0.2.0.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 9 01:24 jedi\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 jedi-0.18.2.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 jinja2\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 json5\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 json5-0.9.14.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 9 01:24 jsonschema\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 jsonschema-4.17.3.dist-info\n", + "lrwxrwxrwx 1 root root 147 Nov 9 01:24 jupyter.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-jupyter-core-5.3.0-if7k3k3yqs5n2xy3ojop3fpnefqktfwy/lib/python3.11/site-packages/jupyter.py\n", + "drwxr-xr-x 8 root root 4096 Nov 9 01:24 jupyter_client\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 jupyter_client-8.2.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 jupyter_core\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 jupyter_core-5.3.0.dist-info\n", + "drwxr-xr-x 17 root root 4096 Nov 9 01:24 jupyter_server\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 jupyter_server-1.21.0.dist-info\n", + "drwxr-xr-x 9 root root 4096 Nov 9 01:24 jupyterlab\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 jupyterlab-3.4.8.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 jupyterlab_pygments\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 jupyterlab_pygments-0.2.2.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 jupyterlab_server\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 jupyterlab_server-2.22.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 markupsafe\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 matplotlib_inline\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 matplotlib_inline-0.1.6.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 mistune\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 mistune-2.0.5.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 9 01:24 mpi4py\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 mpi4py-3.1.4.dist-info\n", + "drwxr-xr-x 12 root root 4096 Nov 9 01:24 nbclassic\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 nbclassic-1.0.0.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 nbclient\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 nbclient-0.8.0.dist-info\n", + "drwxr-xr-x 11 root root 4096 Nov 9 01:24 nbconvert\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 nbconvert-7.4.0.dist-info\n", + "drwxr-xr-x 8 root root 4096 Nov 9 01:24 nbformat\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 nbformat-5.8.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 nest_asyncio-1.5.6.dist-info\n", + "lrwxrwxrwx 1 root root 152 Nov 9 01:24 nest_asyncio.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-nest-asyncio-1.5.6-uphpwzfjvy2o4gjf7zyscvvb3sjujtuh/lib/python3.11/site-packages/nest_asyncio.py\n", + "drwxr-xr-x 20 root root 4096 Nov 9 01:24 notebook\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 notebook-6.5.4.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 notebook_shim\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 notebook_shim-0.2.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 packaging\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 packaging-23.1.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pandocfilters-1.5.0.dist-info\n", + "lrwxrwxrwx 1 root root 154 Nov 9 01:24 pandocfilters.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pandocfilters-1.5.0-wseldytxe3leiottrhb5ogloooxslfd5/lib/python3.11/site-packages/pandocfilters.py\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 parso\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 parso-0.8.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 pexpect\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pexpect-4.8.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pickleshare-0.7.5.dist-info\n", + "lrwxrwxrwx 1 root root 150 Nov 9 01:24 pickleshare.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pickleshare-0.7.5-wty2ecbqmknacpwe6nwpiyxbq5oqhcza/lib/python3.11/site-packages/pickleshare.py\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 pkg_resources\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 platformdirs\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 platformdirs-3.10.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 pluggy\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pluggy-1.0.0.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 9 01:24 prometheus_client\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 prometheus_client-0.17.0.dist-info\n", + "drwxr-xr-x 18 root root 4096 Nov 9 01:24 prompt_toolkit\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 prompt_toolkit-3.0.38.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 psutil\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 psutil-5.9.5.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 ptyprocess\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 ptyprocess-0.7.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 pure_eval\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pure_eval-0.2.2.dist-info\n", + "lrwxrwxrwx 1 root root 176 Nov 9 01:24 pvectorc.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pyrsistent-0.19.3-ptruwnt5v52i3udbb6cbvhq5oeqn7dox/lib/python3.11/site-packages/pvectorc.cpython-311-x86_64-linux-gnu.so\n", + "lrwxrwxrwx 1 root root 136 Nov 9 01:24 py.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pytest-7.3.2-arsygg5grgdxn2ydomwdcv6qg66wbgff/lib/python3.11/site-packages/py.py\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 pycparser\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pycparser-2.21.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 9 01:24 pygments\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 pyrsistent\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pyrsistent-0.19.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 pytest\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pytest-7.3.2.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 python_dateutil-2.8.2.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 pyzmq-25.0.2.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 requests\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 requests-2.31.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 send2trash\n", + "drwxr-xr-x 8 root root 4096 Nov 9 01:24 setuptools\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 setuptools-68.0.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 six-1.16.0.dist-info\n", + "lrwxrwxrwx 1 root root 135 Nov 9 01:24 six.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-six-1.16.0-nbnfdrflk6rrh3fu3pengfnlmslekoqs/lib/python3.11/site-packages/six.py\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 sniffio\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 sniffio-1.3.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 soupsieve\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 soupsieve-2.4.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 stack_data\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 stack_data-0.6.2.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 terminado\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 terminado-0.17.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 tinycss2\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 tinycss2-1.2.1.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 tornado\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 tornado-6.3.3.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 tqdm\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 tqdm-4.66.1.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 9 01:24 traitlets\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 traitlets-5.9.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 9 01:24 urllib3\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 urllib3-2.0.6.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 wcwidth\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 wcwidth-0.2.7.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 9 01:24 webencodings\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 webencodings-0.5.1.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 websocket\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 websocket_client-1.6.3.dist-info\n", + "drwxr-xr-x 13 root root 4096 Nov 9 01:24 zmq\n", + "drwxr-xr-x 4 root root 4096 Nov 9 01:24 zope\n", + "lrwxrwxrwx 1 root root 164 Nov 9 01:24 zope.event-4.6-py3.11-nspkg.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-zope-event-4.6-mlah5dql76d33hl34zeysun66ik2nmjk/lib/python3.11/site-packages/zope.event-4.6-py3.11-nspkg.pth\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 zope.event-4.6.dist-info\n", + "lrwxrwxrwx 1 root root 176 Nov 9 01:24 zope.interface-5.4.0-py3.11-nspkg.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-zope-interface-5.4.0-6jsmi36ohggmpihuchqcd3r3s2eiqaan/lib/python3.11/site-packages/zope.interface-5.4.0-py3.11-nspkg.pth\n", + "drwxr-xr-x 2 root root 4096 Nov 9 01:24 zope.interface-5.4.0.dist-info\n" + ] + } + ], + "source": [ + "!ls -al /opt/views/view/lib/python3.11/site-packages" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Here you can see the full list of spack configured python packages, including exago." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Some info about this container" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PRETTY_NAME=\"Debian GNU/Linux 12 (bookworm)\"\n", + "NAME=\"Debian GNU/Linux\"\n", + "VERSION_ID=\"12\"\n", + "VERSION=\"12 (bookworm)\"\n", + "VERSION_CODENAME=bookworm\n", + "ID=debian\n", + "HOME_URL=\"https://www.debian.org/\"\n", + "SUPPORT_URL=\"https://www.debian.org/support\"\n", + "BUG_REPORT_URL=\"https://bugs.debian.org/\"\n" + ] + } + ], + "source": [ + "!cat /etc/os-release" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "ExaGO w/ MPI", + "language": "python", + "name": "py311-mpi4py-exago" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/devcontainer/tutorial.ipynb b/docs/devcontainer/tutorial.ipynb index 7dce4b46..ecc54b11 100644 --- a/docs/devcontainer/tutorial.ipynb +++ b/docs/devcontainer/tutorial.ipynb @@ -112,8 +112,8 @@ "Number of equality constraint Jacobian evaluations = 19\n", "Number of inequality constraint Jacobian evaluations = 19\n", "Number of Lagrangian Hessian evaluations = 18\n", - "Total CPU secs in IPOPT (w/o function evaluations) = 0.003\n", - "Total CPU secs in NLP function evaluations = 0.001\n", + "Total CPU secs in IPOPT (w/o function evaluations) = 0.014\n", + "Total CPU secs in NLP function evaluations = 0.002\n", "\n", "EXIT: Optimal Solution Found.\n", "=============================================================\n", @@ -195,13 +195,69 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "# Appendix\n" + "# Appendix\n", + "\n", + "Information about the Jupyter/Python/Container config is listed here." ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0.00s - Debugger warning: It seems that frozen modules are being used, which may\n", + "0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off\n", + "0.00s - to python to disable frozen modules.\n", + "0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to disable this validation.\n", + "Available kernels:\n", + " python3 /opt/views/view/share/jupyter/kernels/python3\n", + " py311-exago /usr/local/share/jupyter/kernels/py311-exago\n", + " py311-mpi4py-exago /usr/local/share/jupyter/kernels/py311-mpi4py-exago\n" + ] + } + ], + "source": [ + "!jupyter kernelspec list" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{\n", + " \"argv\": [\n", + " \"/opt/views/view/bin/python3\",\n", + " \"-m\",\n", + " \"ipykernel_launcher\",\n", + " \"-f\",\n", + " \"{connection_file}\"\n", + " ],\n", + " \"display_name\": \"ExaGO\",\n", + " \"language\": \"python\",\n", + " \"metadata\": {\n", + " \"debugger\": true\n", + " }\n", + "}" + ] + } + ], + "source": [ + "!cat /usr/local/share/jupyter/kernels/py311-exago/kernel.json" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": {}, "outputs": [ { "name": "stdout", @@ -330,7 +386,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 7, "metadata": {}, "outputs": [ { @@ -356,7 +412,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 8, "metadata": {}, "outputs": [ { @@ -375,7 +431,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 9, "metadata": {}, "outputs": [ { @@ -411,7 +467,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 10, "metadata": {}, "outputs": [ { @@ -428,7 +484,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 11, "metadata": {}, "outputs": [ { @@ -436,220 +492,220 @@ "output_type": "stream", "text": [ "total 864\n", - "drwxr-xr-x 193 root root 12288 Nov 5 17:14 .\n", - "drwxr-xr-x 39 root root 4096 Nov 5 17:14 ..\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 Babel-2.12.1.dist-info\n", - "drwxr-xr-x 11 root root 4096 Nov 5 17:14 IPython\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 Jinja2-3.0.3.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 MarkupSafe-2.1.3.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 PyYAML-6.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 Pygments-2.16.1.dist-info\n", - "lrwxrwxrwx 1 root root 139 Nov 5 17:14 README.txt -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/python-3.11.6-ybsi7tlnssr3m4h3eqrzq6tyxdcsr2n7/lib/python3.11/site-packages/README.txt\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 Send2Trash-1.8.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 __pycache__\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 _argon2_cffi_bindings\n", - "lrwxrwxrwx 1 root root 175 Nov 5 17:14 _cffi_backend.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-cffi-1.15.1-ns7kiujztzymljhmkwceej66qntnjlcr/lib/python3.11/site-packages/_cffi_backend.cpython-311-x86_64-linux-gnu.so\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 _distutils_hack\n", - "lrwxrwxrwx 1 root root 158 Nov 5 17:14 _pyrsistent_version.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pyrsistent-0.19.3-ptruwnt5v52i3udbb6cbvhq5oeqn7dox/lib/python3.11/site-packages/_pyrsistent_version.py\n", - "drwxr-xr-x 9 root root 4096 Nov 5 17:14 _pytest\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 _yaml\n", - "drwxr-xr-x 7 root root 4096 Nov 5 17:14 anyio\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 anyio-4.0.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 argon2\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 argon2_cffi-21.3.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 argon2_cffi_bindings-21.2.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 arrow\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 arrow-1.2.3.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 asttokens\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 asttokens-2.4.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 async_lru-1.0.3.dist-info\n", - "lrwxrwxrwx 1 root root 146 Nov 5 17:14 async_lru.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-async-lru-1.0.3-n4nwu7jegsgtzsmiplftm3ik7dsghnz7/lib/python3.11/site-packages/async_lru.py\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 attr\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 attrs\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 attrs-23.1.0.dist-info\n", - "drwxr-xr-x 6 root root 4096 Nov 5 17:14 babel\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 backcall\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 backcall-0.2.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 beautifulsoup4-4.12.2.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 bleach\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 bleach-6.0.0.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 bs4\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 certifi\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 certifi-2023.7.22.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 cffi\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 cffi-1.15.1.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 charset_normalizer\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 charset_normalizer-3.3.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 comm\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 comm-0.1.4.dist-info\n", - "drwxr-xr-x 6 root root 4096 Nov 5 17:14 dateutil\n", - "drwxr-xr-x 8 root root 4096 Nov 5 17:14 debugpy\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 debugpy-1.6.7.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 decorator-5.1.1.dist-info\n", - "lrwxrwxrwx 1 root root 146 Nov 5 17:14 decorator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-decorator-5.1.1-y6omagu7er3rjtyisfdajw5upayicgxe/lib/python3.11/site-packages/decorator.py\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 defusedxml\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 defusedxml-0.7.1.dist-info\n", - "lrwxrwxrwx 1 root root 160 Nov 5 17:14 distutils-precedence.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-setuptools-68.0.0-ceuwjz4g6i5jxk4babjsbh6oxmqggbba/lib/python3.11/site-packages/distutils-precedence.pth\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 editables\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 editables-0.3.dist-info\n", - "lrwxrwxrwx 1 root root 164 Nov 5 17:14 exago.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/exago-1.6.0-ssrhw6tbxmal4jmksthjndq2wu33csoe/lib/python3.11/site-packages/exago.cpython-311-x86_64-linux-gnu.so\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 executing\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 executing-1.2.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 fastjsonschema\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 fastjsonschema-2.16.3.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 fqdn\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 fqdn-1.5.1.dist-info\n", - "drwxr-xr-x 9 root root 4096 Nov 5 17:14 gevent\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 gevent-23.7.0.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 greenlet\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 greenlet-2.0.2.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 hatch_jupyter_builder\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 hatch_jupyter_builder-0.8.3.dist-info\n", - "drwxr-xr-x 12 root root 4096 Nov 5 17:14 hatchling\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 hatchling-1.18.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 idna\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 idna-3.4.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 iniconfig\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 iniconfig-2.0.0.dist-info\n", - "drwxr-xr-x 9 root root 4096 Nov 5 17:14 ipykernel\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 ipykernel-6.23.1.dist-info\n", - "lrwxrwxrwx 1 root root 156 Nov 5 17:14 ipykernel_launcher.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-ipykernel-6.23.1-raogvtxj7buw67byp3cbpliaqqc4bgkc/lib/python3.11/site-packages/ipykernel_launcher.py\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 ipython-8.14.0.dist-info\n", - "drwxr-xr-x 6 root root 4096 Nov 5 17:14 isoduration\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 isoduration-20.11.0.dist-info\n", - "drwxr-xr-x 7 root root 4096 Nov 5 17:14 jedi\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 jedi-0.18.2.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jinja2\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 json5\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 json5-0.9.14.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 jsonpointer-2.0.dist-info\n", - "lrwxrwxrwx 1 root root 148 Nov 5 17:14 jsonpointer.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-jsonpointer-2.0-6f5qc5t5ix6e77lewi5pgup5cwgmbngu/lib/python3.11/site-packages/jsonpointer.py\n", - "drwxr-xr-x 6 root root 4096 Nov 5 17:14 jsonschema\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jsonschema-4.17.3.dist-info\n", - "lrwxrwxrwx 1 root root 147 Nov 5 17:14 jupyter.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-jupyter-core-5.3.0-bupox3eooyhmccqjf75vgk34tys5l75z/lib/python3.11/site-packages/jupyter.py\n", - "drwxr-xr-x 8 root root 4096 Nov 5 17:14 jupyter_client\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyter_client-8.2.0.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 jupyter_core\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyter_core-5.3.0.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 jupyter_events\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyter_events-0.6.3.dist-info\n", - "drwxr-xr-x 7 root root 4096 Nov 5 17:14 jupyter_lsp\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 jupyter_lsp-2.2.0.dist-info\n", - "drwxr-xr-x 18 root root 4096 Nov 5 17:14 jupyter_server\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyter_server-2.6.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyter_server_terminals\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyter_server_terminals-0.4.4.dist-info\n", - "drwxr-xr-x 11 root root 4096 Nov 5 17:14 jupyterlab\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyterlab-4.0.1.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 jupyterlab_pygments\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 jupyterlab_pygments-0.2.2.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 jupyterlab_server\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 jupyterlab_server-2.22.1.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 markupsafe\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 matplotlib_inline\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 matplotlib_inline-0.1.6.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 mistune\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 mistune-2.0.5.dist-info\n", - "drwxr-xr-x 7 root root 4096 Nov 5 17:14 mpi4py\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 mpi4py-3.1.4.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 nbclient\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 nbclient-0.8.0.dist-info\n", - "drwxr-xr-x 11 root root 4096 Nov 5 17:14 nbconvert\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 nbconvert-7.4.0.dist-info\n", - "drwxr-xr-x 8 root root 4096 Nov 5 17:14 nbformat\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 nbformat-5.8.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 nest_asyncio-1.5.6.dist-info\n", - "lrwxrwxrwx 1 root root 152 Nov 5 17:14 nest_asyncio.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-nest-asyncio-1.5.6-hbtnt2uhwofptyytpmbxi2uqcbngvlox/lib/python3.11/site-packages/nest_asyncio.py\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 notebook_shim\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 notebook_shim-0.2.3.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 overrides\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 overrides-7.3.1.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 packaging\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 packaging-23.1.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pandocfilters-1.5.0.dist-info\n", - "lrwxrwxrwx 1 root root 154 Nov 5 17:14 pandocfilters.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pandocfilters-1.5.0-wseldytxe3leiottrhb5ogloooxslfd5/lib/python3.11/site-packages/pandocfilters.py\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 parso\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 parso-0.8.3.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 pathspec\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pathspec-0.11.1.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 pexpect\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pexpect-4.8.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pickleshare-0.7.5.dist-info\n", - "lrwxrwxrwx 1 root root 150 Nov 5 17:14 pickleshare.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pickleshare-0.7.5-wty2ecbqmknacpwe6nwpiyxbq5oqhcza/lib/python3.11/site-packages/pickleshare.py\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 pkg_resources\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 platformdirs\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 platformdirs-3.10.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 pluggy\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pluggy-1.0.0.dist-info\n", - "drwxr-xr-x 6 root root 4096 Nov 5 17:14 prometheus_client\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 prometheus_client-0.17.0.dist-info\n", - "drwxr-xr-x 18 root root 4096 Nov 5 17:14 prompt_toolkit\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 prompt_toolkit-3.0.38.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 psutil\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 psutil-5.9.5.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 ptyprocess\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 ptyprocess-0.7.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 pure_eval\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pure_eval-0.2.2.dist-info\n", - "lrwxrwxrwx 1 root root 176 Nov 5 17:14 pvectorc.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pyrsistent-0.19.3-ptruwnt5v52i3udbb6cbvhq5oeqn7dox/lib/python3.11/site-packages/pvectorc.cpython-311-x86_64-linux-gnu.so\n", - "lrwxrwxrwx 1 root root 136 Nov 5 17:14 py.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pytest-7.3.2-wx6nsrjdt6ftqyuprphukh4m64lu3hk6/lib/python3.11/site-packages/py.py\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 pycparser\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pycparser-2.21.dist-info\n", - "drwxr-xr-x 7 root root 4096 Nov 5 17:14 pygments\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 pyrsistent\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pyrsistent-0.19.3.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 pytest\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pytest-7.3.2.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 python_dateutil-2.8.2.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 python_json_logger-2.0.7.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 pythonjsonlogger\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 pyzmq-25.0.2.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 requests\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 requests-2.31.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 rfc3339_validator-0.1.4.dist-info\n", - "lrwxrwxrwx 1 root root 162 Nov 5 17:14 rfc3339_validator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-rfc3339-validator-0.1.4-ifadhrcyquy632ftjvceaylpe4aqn7kt/lib/python3.11/site-packages/rfc3339_validator.py\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 rfc3986_validator-0.1.1.dist-info\n", - "lrwxrwxrwx 1 root root 162 Nov 5 17:14 rfc3986_validator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-rfc3986-validator-0.1.1-zkwpotfen5ywonax22utpdph5j4eczmr/lib/python3.11/site-packages/rfc3986_validator.py\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 send2trash\n", - "drwxr-xr-x 8 root root 4096 Nov 5 17:14 setuptools\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 setuptools-68.0.0.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 six-1.16.0.dist-info\n", - "lrwxrwxrwx 1 root root 135 Nov 5 17:14 six.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-six-1.16.0-nbnfdrflk6rrh3fu3pengfnlmslekoqs/lib/python3.11/site-packages/six.py\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 sniffio\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 sniffio-1.3.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 soupsieve\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 soupsieve-2.4.1.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 stack_data\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 stack_data-0.6.2.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 terminado\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 terminado-0.17.1.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 tinycss2\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 tinycss2-1.2.1.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 tornado\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 tornado-6.3.3.dist-info\n", - "drwxr-xr-x 6 root root 4096 Nov 5 17:14 traitlets\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 traitlets-5.9.0.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 trove_classifiers\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 trove_classifiers-2023.8.7.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 uri_template\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 uri_template-1.2.0.dist-info\n", - "drwxr-xr-x 5 root root 4096 Nov 5 17:14 urllib3\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 urllib3-2.0.6.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 wcwidth\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 wcwidth-0.2.7.dist-info\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 webcolors-1.11.1.dist-info\n", - "lrwxrwxrwx 1 root root 147 Nov 5 17:14 webcolors.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-webcolors-1.11.1-x6fsbcye464konn2u33psb3vrat7bmzj/lib/python3.11/site-packages/webcolors.py\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 webencodings\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 webencodings-0.5.1.dist-info\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 websocket\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 websocket_client-1.6.3.dist-info\n", - "drwxr-xr-x 3 root root 4096 Nov 5 17:14 yaml\n", - "drwxr-xr-x 13 root root 4096 Nov 5 17:14 zmq\n", - "drwxr-xr-x 4 root root 4096 Nov 5 17:14 zope\n", - "lrwxrwxrwx 1 root root 164 Nov 5 17:14 zope.event-4.6-py3.11-nspkg.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-zope-event-4.6-mlah5dql76d33hl34zeysun66ik2nmjk/lib/python3.11/site-packages/zope.event-4.6-py3.11-nspkg.pth\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 zope.event-4.6.dist-info\n", - "lrwxrwxrwx 1 root root 176 Nov 5 17:14 zope.interface-5.4.0-py3.11-nspkg.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-zope-interface-5.4.0-6jsmi36ohggmpihuchqcd3r3s2eiqaan/lib/python3.11/site-packages/zope.interface-5.4.0-py3.11-nspkg.pth\n", - "drwxr-xr-x 2 root root 4096 Nov 5 17:14 zope.interface-5.4.0.dist-info\n" + "drwxr-xr-x 193 root root 12288 Nov 6 20:19 .\n", + "drwxr-xr-x 39 root root 4096 Nov 6 20:19 ..\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 Babel-2.12.1.dist-info\n", + "drwxr-xr-x 11 root root 4096 Nov 6 20:19 IPython\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 Jinja2-3.0.3.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 MarkupSafe-2.1.3.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 PyYAML-6.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 Pygments-2.16.1.dist-info\n", + "lrwxrwxrwx 1 root root 139 Nov 6 20:19 README.txt -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/python-3.11.6-ybsi7tlnssr3m4h3eqrzq6tyxdcsr2n7/lib/python3.11/site-packages/README.txt\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 Send2Trash-1.8.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 __pycache__\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 _argon2_cffi_bindings\n", + "lrwxrwxrwx 1 root root 175 Nov 6 20:19 _cffi_backend.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-cffi-1.15.1-ns7kiujztzymljhmkwceej66qntnjlcr/lib/python3.11/site-packages/_cffi_backend.cpython-311-x86_64-linux-gnu.so\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 _distutils_hack\n", + "lrwxrwxrwx 1 root root 158 Nov 6 20:19 _pyrsistent_version.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pyrsistent-0.19.3-ptruwnt5v52i3udbb6cbvhq5oeqn7dox/lib/python3.11/site-packages/_pyrsistent_version.py\n", + "drwxr-xr-x 9 root root 4096 Nov 6 20:19 _pytest\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 _yaml\n", + "drwxr-xr-x 7 root root 4096 Nov 6 20:19 anyio\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 anyio-4.0.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 argon2\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 argon2_cffi-21.3.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 argon2_cffi_bindings-21.2.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 arrow\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 arrow-1.2.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 asttokens\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 asttokens-2.4.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 async_lru-1.0.3.dist-info\n", + "lrwxrwxrwx 1 root root 146 Nov 6 20:19 async_lru.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-async-lru-1.0.3-n4nwu7jegsgtzsmiplftm3ik7dsghnz7/lib/python3.11/site-packages/async_lru.py\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 attr\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 attrs\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 attrs-23.1.0.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 6 20:19 babel\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 backcall\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 backcall-0.2.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 beautifulsoup4-4.12.2.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 bleach\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 bleach-6.0.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 bs4\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 certifi\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 certifi-2023.7.22.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 cffi\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 cffi-1.15.1.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 charset_normalizer\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 charset_normalizer-3.3.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 comm\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 comm-0.1.4.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 6 20:19 dateutil\n", + "drwxr-xr-x 8 root root 4096 Nov 6 20:19 debugpy\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 debugpy-1.6.7.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 decorator-5.1.1.dist-info\n", + "lrwxrwxrwx 1 root root 146 Nov 6 20:19 decorator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-decorator-5.1.1-y6omagu7er3rjtyisfdajw5upayicgxe/lib/python3.11/site-packages/decorator.py\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 defusedxml\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 defusedxml-0.7.1.dist-info\n", + "lrwxrwxrwx 1 root root 160 Nov 6 20:19 distutils-precedence.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-setuptools-68.0.0-ceuwjz4g6i5jxk4babjsbh6oxmqggbba/lib/python3.11/site-packages/distutils-precedence.pth\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 editables\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 editables-0.3.dist-info\n", + "lrwxrwxrwx 1 root root 164 Nov 6 20:19 exago.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/exago-1.6.0-ssrhw6tbxmal4jmksthjndq2wu33csoe/lib/python3.11/site-packages/exago.cpython-311-x86_64-linux-gnu.so\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 executing\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 executing-1.2.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 fastjsonschema\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 fastjsonschema-2.16.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 fqdn\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 fqdn-1.5.1.dist-info\n", + "drwxr-xr-x 9 root root 4096 Nov 6 20:19 gevent\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 gevent-23.7.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 greenlet\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 greenlet-2.0.2.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 hatch_jupyter_builder\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 hatch_jupyter_builder-0.8.3.dist-info\n", + "drwxr-xr-x 12 root root 4096 Nov 6 20:19 hatchling\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 hatchling-1.18.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 idna\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 idna-3.4.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 iniconfig\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 iniconfig-2.0.0.dist-info\n", + "drwxr-xr-x 9 root root 4096 Nov 6 20:19 ipykernel\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 ipykernel-6.23.1.dist-info\n", + "lrwxrwxrwx 1 root root 156 Nov 6 20:19 ipykernel_launcher.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-ipykernel-6.23.1-raogvtxj7buw67byp3cbpliaqqc4bgkc/lib/python3.11/site-packages/ipykernel_launcher.py\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 ipython-8.14.0.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 6 20:19 isoduration\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 isoduration-20.11.0.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 6 20:19 jedi\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 jedi-0.18.2.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jinja2\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 json5\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 json5-0.9.14.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 jsonpointer-2.0.dist-info\n", + "lrwxrwxrwx 1 root root 148 Nov 6 20:19 jsonpointer.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-jsonpointer-2.0-6f5qc5t5ix6e77lewi5pgup5cwgmbngu/lib/python3.11/site-packages/jsonpointer.py\n", + "drwxr-xr-x 6 root root 4096 Nov 6 20:19 jsonschema\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jsonschema-4.17.3.dist-info\n", + "lrwxrwxrwx 1 root root 147 Nov 6 20:19 jupyter.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-jupyter-core-5.3.0-bupox3eooyhmccqjf75vgk34tys5l75z/lib/python3.11/site-packages/jupyter.py\n", + "drwxr-xr-x 8 root root 4096 Nov 6 20:19 jupyter_client\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyter_client-8.2.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 jupyter_core\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyter_core-5.3.0.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 jupyter_events\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyter_events-0.6.3.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 6 20:19 jupyter_lsp\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 jupyter_lsp-2.2.0.dist-info\n", + "drwxr-xr-x 18 root root 4096 Nov 6 20:19 jupyter_server\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyter_server-2.6.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyter_server_terminals\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyter_server_terminals-0.4.4.dist-info\n", + "drwxr-xr-x 11 root root 4096 Nov 6 20:19 jupyterlab\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyterlab-4.0.1.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 jupyterlab_pygments\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 jupyterlab_pygments-0.2.2.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 jupyterlab_server\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 jupyterlab_server-2.22.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 markupsafe\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 matplotlib_inline\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 matplotlib_inline-0.1.6.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 mistune\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 mistune-2.0.5.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 6 20:19 mpi4py\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 mpi4py-3.1.4.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 nbclient\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 nbclient-0.8.0.dist-info\n", + "drwxr-xr-x 11 root root 4096 Nov 6 20:19 nbconvert\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 nbconvert-7.4.0.dist-info\n", + "drwxr-xr-x 8 root root 4096 Nov 6 20:19 nbformat\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 nbformat-5.8.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 nest_asyncio-1.5.6.dist-info\n", + "lrwxrwxrwx 1 root root 152 Nov 6 20:19 nest_asyncio.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-nest-asyncio-1.5.6-hbtnt2uhwofptyytpmbxi2uqcbngvlox/lib/python3.11/site-packages/nest_asyncio.py\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 notebook_shim\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 notebook_shim-0.2.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 overrides\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 overrides-7.3.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 packaging\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 packaging-23.1.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pandocfilters-1.5.0.dist-info\n", + "lrwxrwxrwx 1 root root 154 Nov 6 20:19 pandocfilters.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pandocfilters-1.5.0-wseldytxe3leiottrhb5ogloooxslfd5/lib/python3.11/site-packages/pandocfilters.py\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 parso\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 parso-0.8.3.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 pathspec\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pathspec-0.11.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 pexpect\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pexpect-4.8.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pickleshare-0.7.5.dist-info\n", + "lrwxrwxrwx 1 root root 150 Nov 6 20:19 pickleshare.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pickleshare-0.7.5-wty2ecbqmknacpwe6nwpiyxbq5oqhcza/lib/python3.11/site-packages/pickleshare.py\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 pkg_resources\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 platformdirs\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 platformdirs-3.10.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 pluggy\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pluggy-1.0.0.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 6 20:19 prometheus_client\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 prometheus_client-0.17.0.dist-info\n", + "drwxr-xr-x 18 root root 4096 Nov 6 20:19 prompt_toolkit\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 prompt_toolkit-3.0.38.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 psutil\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 psutil-5.9.5.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 ptyprocess\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 ptyprocess-0.7.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 pure_eval\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pure_eval-0.2.2.dist-info\n", + "lrwxrwxrwx 1 root root 176 Nov 6 20:19 pvectorc.cpython-311-x86_64-linux-gnu.so -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pyrsistent-0.19.3-ptruwnt5v52i3udbb6cbvhq5oeqn7dox/lib/python3.11/site-packages/pvectorc.cpython-311-x86_64-linux-gnu.so\n", + "lrwxrwxrwx 1 root root 136 Nov 6 20:19 py.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-pytest-7.3.2-wx6nsrjdt6ftqyuprphukh4m64lu3hk6/lib/python3.11/site-packages/py.py\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 pycparser\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pycparser-2.21.dist-info\n", + "drwxr-xr-x 7 root root 4096 Nov 6 20:19 pygments\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 pyrsistent\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pyrsistent-0.19.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 pytest\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pytest-7.3.2.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 python_dateutil-2.8.2.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 python_json_logger-2.0.7.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 pythonjsonlogger\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 pyzmq-25.0.2.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 requests\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 requests-2.31.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 rfc3339_validator-0.1.4.dist-info\n", + "lrwxrwxrwx 1 root root 162 Nov 6 20:19 rfc3339_validator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-rfc3339-validator-0.1.4-ifadhrcyquy632ftjvceaylpe4aqn7kt/lib/python3.11/site-packages/rfc3339_validator.py\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 rfc3986_validator-0.1.1.dist-info\n", + "lrwxrwxrwx 1 root root 162 Nov 6 20:19 rfc3986_validator.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-rfc3986-validator-0.1.1-zkwpotfen5ywonax22utpdph5j4eczmr/lib/python3.11/site-packages/rfc3986_validator.py\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 send2trash\n", + "drwxr-xr-x 8 root root 4096 Nov 6 20:19 setuptools\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 setuptools-68.0.0.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 six-1.16.0.dist-info\n", + "lrwxrwxrwx 1 root root 135 Nov 6 20:19 six.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-six-1.16.0-nbnfdrflk6rrh3fu3pengfnlmslekoqs/lib/python3.11/site-packages/six.py\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 sniffio\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 sniffio-1.3.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 soupsieve\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 soupsieve-2.4.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 stack_data\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 stack_data-0.6.2.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 terminado\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 terminado-0.17.1.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 tinycss2\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 tinycss2-1.2.1.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 tornado\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 tornado-6.3.3.dist-info\n", + "drwxr-xr-x 6 root root 4096 Nov 6 20:19 traitlets\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 traitlets-5.9.0.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 trove_classifiers\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 trove_classifiers-2023.8.7.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 uri_template\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 uri_template-1.2.0.dist-info\n", + "drwxr-xr-x 5 root root 4096 Nov 6 20:19 urllib3\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 urllib3-2.0.6.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 wcwidth\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 wcwidth-0.2.7.dist-info\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 webcolors-1.11.1.dist-info\n", + "lrwxrwxrwx 1 root root 147 Nov 6 20:19 webcolors.py -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-webcolors-1.11.1-x6fsbcye464konn2u33psb3vrat7bmzj/lib/python3.11/site-packages/webcolors.py\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 webencodings\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 webencodings-0.5.1.dist-info\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 websocket\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 websocket_client-1.6.3.dist-info\n", + "drwxr-xr-x 3 root root 4096 Nov 6 20:19 yaml\n", + "drwxr-xr-x 13 root root 4096 Nov 6 20:19 zmq\n", + "drwxr-xr-x 4 root root 4096 Nov 6 20:19 zope\n", + "lrwxrwxrwx 1 root root 164 Nov 6 20:19 zope.event-4.6-py3.11-nspkg.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-zope-event-4.6-mlah5dql76d33hl34zeysun66ik2nmjk/lib/python3.11/site-packages/zope.event-4.6-py3.11-nspkg.pth\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 zope.event-4.6.dist-info\n", + "lrwxrwxrwx 1 root root 176 Nov 6 20:19 zope.interface-5.4.0-py3.11-nspkg.pth -> /opt/software/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/py-zope-interface-5.4.0-6jsmi36ohggmpihuchqcd3r3s2eiqaan/lib/python3.11/site-packages/zope.interface-5.4.0-py3.11-nspkg.pth\n", + "drwxr-xr-x 2 root root 4096 Nov 6 20:19 zope.interface-5.4.0.dist-info\n" ] } ], @@ -673,7 +729,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": 12, "metadata": {}, "outputs": [ { diff --git a/docs/devcontainer/viz-tutorial.ipynb b/docs/devcontainer/viz-tutorial.ipynb new file mode 100644 index 00000000..6c29446d --- /dev/null +++ b/docs/devcontainer/viz-tutorial.ipynb @@ -0,0 +1,521 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Intro\n", + "\n", + "This assumes you have gone through the intro/mpi4py intro, and that you are comfortable generating ExaGO output.\n", + "\n", + "Now we will go through specifics to the vizualisation frontend, how it is installed, and a typical workflow.\n", + "\n", + "# Open Issues:\n", + "\n", + "- npm dependencies were pinned and have security issues\n", + "- requirements.txt has pinned versions and we cannot upgrade / reproduce\n", + "- OpenAI keys and other missing steps...\n", + "\n", + "# Generating file to visualize\n", + "\n", + "I don't know how to do gic file option, so we are going to use OPFLOW C++ CLI to do this..." + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ExaGO 1.6.0 built on Nov 9 2023\n" + ] + } + ], + "source": [ + "!opflow --version" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "TODO: Going to let Shri fill the details in here, as likely we don't want people churning large data sets in a small demo, and we can include pre-generated data I would hope..." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "!./opflow -netfile -save_output -opflow_output_format JSON -gicfile " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Visualization\n", + "\n", + "Launch through shell commands or with the following shell command:" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[K\u001b[?25hm##################\u001b[0m) ⠴ reify:fsevents: \u001b[7msill\u001b[0m \u001b[35mreify\u001b[0m mark deleted [ '/home/app/viz\u001b[0m\u001b[Ks\u001b[0m\u001b[K\n", + "> geojson@0.1.0 prepare\n", + "> cd .. && husky install\n", + "\n", + "husky - Git hooks installed\n", + "\n", + "up to date, audited 1131 packages in 4s\n", + "\n", + "222 packages are looking for funding\n", + " run `npm fund` for details\n", + "\n", + "2 \u001b[33m\u001b[1mmoderate\u001b[22m\u001b[39m severity vulnerabilities\n", + "\n", + "To address all issues, run:\n", + " npm audit fix\n", + "\n", + "Run `npm audit` for details.\n", + "\n", + "> geojson@0.1.0 start\n", + "> webpack-dev-server --progress --hot --open\n", + "\n", + "[webpack-cli] \u001b[31mError: Cannot find module '../../webpack.config.local'\n", + "Require stack:\n", + "- /home/app/viz/webpack.config.js\n", + "- /home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js\n", + "- /home/app/viz/node_modules/webpack-cli/lib/bootstrap.js\n", + "- /home/app/viz/node_modules/webpack-cli/bin/cli.js\n", + "- /home/app/viz/node_modules/webpack-dev-server/bin/webpack-dev-server.js\n", + " at Module._resolveFilename (node:internal/modules/cjs/loader:1039:15)\n", + " at Module._load (node:internal/modules/cjs/loader:885:27)\n", + " at Module.require (node:internal/modules/cjs/loader:1105:19)\n", + " at require (node:internal/modules/cjs/helpers:103:18)\n", + " at module.exports (/home/app/viz/webpack.config.js:40:32)\n", + " at loadConfigByPath (/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js:1445:37)\n", + " at async WebpackCLI.loadConfig (/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js:1515:38)\n", + " at async WebpackCLI.createCompiler (/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js:1781:22)\n", + " at async Command. (/home/app/viz/node_modules/@webpack-cli/serve/lib/index.js:81:30)\n", + " at async Command.parseAsync (/home/app/viz/node_modules/webpack-cli/node_modules/commander/lib/command.js:935:5) {\n", + " code: 'MODULE_NOT_FOUND',\n", + " requireStack: [\n", + " '/home/app/viz/webpack.config.js',\n", + " '/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js',\n", + " '/home/app/viz/node_modules/webpack-cli/lib/bootstrap.js',\n", + " '/home/app/viz/node_modules/webpack-cli/bin/cli.js',\n", + " '/home/app/viz/node_modules/webpack-dev-server/bin/webpack-dev-server.js'\n", + " ]\n", + "}\u001b[39m\n" + ] + } + ], + "source": [ + "!cd ../../viz && npm install && npm start" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "I seem to be stuck... Let's try and capture some more debugging information really quick." + ] + }, + { + "cell_type": "code", + "execution_count": 40, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Requirement already satisfied: pip in /usr/local/lib/python3.11/site-packages (23.2.1)\n", + "Collecting pip\n", + " Obtaining dependency information for pip from https://files.pythonhosted.org/packages/47/6a/453160888fab7c6a432a6e25f8afe6256d0d9f2cbd25971021da6491d899/pip-23.3.1-py3-none-any.whl.metadata\n", + " Downloading pip-23.3.1-py3-none-any.whl.metadata (3.5 kB)\n", + "Downloading pip-23.3.1-py3-none-any.whl (2.1 MB)\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m2.1/2.1 MB\u001b[0m \u001b[31m9.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0ma \u001b[36m0:00:01\u001b[0m\n", + "\u001b[?25hInstalling collected packages: pip\n", + " Attempting uninstall: pip\n", + " Found existing installation: pip 23.2.1\n", + " Uninstalling pip-23.2.1:\n", + " Successfully uninstalled pip-23.2.1\n", + "Successfully installed pip-23.3.1\n", + "\u001b[33mWARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv\u001b[0m\u001b[33m\n", + "\u001b[0mRequirement already satisfied: aiohttp==3.8.4 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 1)) (3.8.4)\n", + "Requirement already satisfied: aiosignal==1.3.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 2)) (1.3.1)\n", + "Requirement already satisfied: asttokens==2.2.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 3)) (2.2.1)\n", + "Requirement already satisfied: async-timeout==4.0.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 4)) (4.0.2)\n", + "Requirement already satisfied: attrs==23.1.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 5)) (23.1.0)\n", + "Requirement already satisfied: backcall==0.2.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 6)) (0.2.0)\n", + "Requirement already satisfied: blinker==1.6.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 7)) (1.6.2)\n", + "Requirement already satisfied: certifi==2023.5.7 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 8)) (2023.5.7)\n", + "Requirement already satisfied: charset-normalizer==3.2.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 9)) (3.2.0)\n", + "Requirement already satisfied: click==8.1.5 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 10)) (8.1.5)\n", + "Requirement already satisfied: colorama==0.4.6 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 11)) (0.4.6)\n", + "Requirement already satisfied: comm==0.1.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 12)) (0.1.3)\n", + "Requirement already satisfied: config in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 13)) (0.5.1)\n", + "Requirement already satisfied: dataclasses-json==0.5.9 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 14)) (0.5.9)\n", + "Requirement already satisfied: debugpy==1.6.7 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 15)) (1.6.7)\n", + "Requirement already satisfied: decorator==5.1.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 16)) (5.1.1)\n", + "Requirement already satisfied: executing==1.2.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 17)) (1.2.0)\n", + "Requirement already satisfied: Flask==2.3.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 18)) (2.3.2)\n", + "Requirement already satisfied: Flask-Cors==4.0.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 19)) (4.0.0)\n", + "Requirement already satisfied: frozenlist==1.4.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 20)) (1.4.0)\n", + "Requirement already satisfied: greenlet==2.0.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 21)) (2.0.2)\n", + "Requirement already satisfied: idna==3.4 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 22)) (3.4)\n", + "Requirement already satisfied: ipykernel==6.23.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 23)) (6.23.3)\n", + "Requirement already satisfied: ipython==8.14.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 24)) (8.14.0)\n", + "Requirement already satisfied: itsdangerous==2.1.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 25)) (2.1.2)\n", + "Requirement already satisfied: jedi==0.18.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 26)) (0.18.2)\n", + "Requirement already satisfied: jellyfish==0.11.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 27)) (0.11.2)\n", + "Requirement already satisfied: Jinja2==3.1.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 28)) (3.1.2)\n", + "Requirement already satisfied: jupyter_client==8.3.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 29)) (8.3.0)\n", + "Requirement already satisfied: jupyter_core==5.3.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 30)) (5.3.1)\n", + "Requirement already satisfied: langchain==0.0.233 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 31)) (0.0.233)\n", + "Requirement already satisfied: langsmith==0.0.5 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 32)) (0.0.5)\n", + "Requirement already satisfied: MarkupSafe==2.1.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 33)) (2.1.3)\n", + "Requirement already satisfied: marshmallow==3.19.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 34)) (3.19.0)\n", + "Requirement already satisfied: marshmallow-enum==1.5.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 35)) (1.5.1)\n", + "Requirement already satisfied: matplotlib-inline==0.1.6 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 36)) (0.1.6)\n", + "Requirement already satisfied: multidict==6.0.4 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 37)) (6.0.4)\n", + "Requirement already satisfied: mypy-extensions==1.0.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 38)) (1.0.0)\n", + "Requirement already satisfied: nest-asyncio==1.5.6 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 39)) (1.5.6)\n", + "Requirement already satisfied: numexpr==2.8.4 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 40)) (2.8.4)\n", + "Requirement already satisfied: numpy==1.25.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 41)) (1.25.0)\n", + "Requirement already satisfied: openai==0.27.8 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 42)) (0.27.8)\n", + "Requirement already satisfied: openapi-schema-pydantic==1.2.4 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 43)) (1.2.4)\n", + "Requirement already satisfied: packaging==23.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 44)) (23.1)\n", + "Requirement already satisfied: pandas==2.0.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 45)) (2.0.2)\n", + "Requirement already satisfied: parso==0.8.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 46)) (0.8.3)\n", + "Requirement already satisfied: pickleshare==0.7.5 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 47)) (0.7.5)\n", + "Requirement already satisfied: platformdirs==3.8.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 48)) (3.8.0)\n", + "Requirement already satisfied: prompt-toolkit==3.0.38 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 49)) (3.0.38)\n", + "Requirement already satisfied: psutil==5.9.5 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 50)) (5.9.5)\n", + "Requirement already satisfied: psycopg2==2.9.6 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 51)) (2.9.6)\n", + "Requirement already satisfied: pure-eval==0.2.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 52)) (0.2.2)\n", + "Requirement already satisfied: pydantic==1.10.11 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 53)) (1.10.11)\n", + "Requirement already satisfied: Pygments==2.15.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 54)) (2.15.1)\n", + "Requirement already satisfied: python-dateutil==2.8.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 55)) (2.8.2)\n", + "Requirement already satisfied: pytz==2023.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 56)) (2023.3)\n", + "Requirement already satisfied: PyYAML==6.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 57)) (6.0)\n", + "Requirement already satisfied: pyzmq==25.1.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 58)) (25.1.0)\n", + "Requirement already satisfied: requests==2.31.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 59)) (2.31.0)\n", + "Requirement already satisfied: shapely==2.0.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 60)) (2.0.1)\n", + "Requirement already satisfied: six==1.16.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 61)) (1.16.0)\n", + "Requirement already satisfied: SQLAlchemy==2.0.18 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 62)) (2.0.18)\n", + "Requirement already satisfied: stack-data==0.6.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 63)) (0.6.2)\n", + "Requirement already satisfied: tenacity==8.2.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 64)) (8.2.2)\n", + "Requirement already satisfied: tornado==6.3.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 65)) (6.3.2)\n", + "Requirement already satisfied: tqdm==4.65.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 66)) (4.65.0)\n", + "Requirement already satisfied: traitlets==5.9.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 67)) (5.9.0)\n", + "Requirement already satisfied: typing-inspect==0.9.0 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 68)) (0.9.0)\n", + "Requirement already satisfied: typing_extensions==4.7.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 69)) (4.7.1)\n", + "Requirement already satisfied: tzdata==2023.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 70)) (2023.3)\n", + "Requirement already satisfied: urllib3==2.0.3 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 71)) (2.0.3)\n", + "Requirement already satisfied: us==3.1.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 72)) (3.1.1)\n", + "Requirement already satisfied: wcwidth==0.2.6 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 73)) (0.2.6)\n", + "Requirement already satisfied: Werkzeug==2.3.6 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 74)) (2.3.6)\n", + "Requirement already satisfied: yarl==1.9.2 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 75)) (1.9.2)\n", + "Requirement already satisfied: pexpect>4.3 in /usr/local/lib/python3.11/site-packages (from ipython==8.14.0->-r requirements.txt (line 24)) (4.8.0)\n", + "Requirement already satisfied: ptyprocess>=0.5 in /usr/local/lib/python3.11/site-packages (from pexpect>4.3->ipython==8.14.0->-r requirements.txt (line 24)) (0.7.0)\n", + "\u001b[33mWARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv\u001b[0m\u001b[33m\n", + "\u001b[0m * Serving Flask app 'server'\n", + " * Debug mode: on\n", + "\u001b[31m\u001b[1mWARNING: This is a development server. Do not use it in a production deployment. Use a production WSGI server instead.\u001b[0m\n", + " * Running on http://127.0.0.1:5000\n", + "\u001b[33mPress CTRL+C to quit\u001b[0m\n", + " * Restarting with stat\n", + " * Debugger is active!\n", + " * Debugger PIN: 110-927-162\n", + "127.0.0.1 - - [09/Nov/2023 02:55:53] \"\u001b[33mGET / HTTP/1.1\u001b[0m\" 404 -\n", + "127.0.0.1 - - [09/Nov/2023 02:56:04] \"\u001b[33mGET / HTTP/1.1\u001b[0m\" 404 -\n", + "127.0.0.1 - - [09/Nov/2023 02:56:06] \"\u001b[33mGET / HTTP/1.1\u001b[0m\" 404 -\n", + "^C\n" + ] + } + ], + "source": [ + "!cd ../../viz/backend && sudo python3 -m pip install --upgrade pip && sudo python3 -m pip install -r requirements.txt && PYTHONPATH=/usr/local/lib/python3.11/site-packages python3 server.py" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "It seems like there were not only windows file endings here, but there were hard coded frozen requirements that were just for windows, and pinned for python < 3.11... Trying to run anyway just to see what happens.\n", + "\n", + "Stopping here, where a few dependencies where missing, and PYTHONPATH wasn't quite correct. I am missing quite a few steps, but hopefully this is close..." + ] + }, + { + "cell_type": "code", + "execution_count": 31, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Traceback (most recent call last):\n", + " File \"/home/app/viz/backend/server.py\", line 2, in \n", + " from flask import Flask\n", + "ModuleNotFoundError: No module named 'flask'\n" + ] + } + ], + "source": [ + "!cd ../../viz/backend && python3 server.py" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + "# Installation\n", + "\n", + "This is done through the `postCreateCommand` that is configured in `.devcontainer/devcontainer.json` in theroy. Still debugging, so I did some stuff through Jupyter magic just to iterate quickly." + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{\n", + "\t\"build\": {\n", + "\t\t\"dockerfile\": \"Dockerfile\",\n", + "\t\t\"context\": \"..\"\n", + "\t},\n", + "\t\"customizations\": {\n", + "\t\t\"vscode\": {\n", + "\t\t\t\"extensions\": [\n", + "\t\t\t\t\"ms-azuretools.vscode-docker\",\n", + "\t\t\t\t\"github.vscode-github-actions\",\n", + "\t\t\t\t\"ms-toolsai.jupyter\",\n", + "\t\t\t\t\"GitHub.copilot\",\n", + "\t\t\t\t\"ms-vsliveshare.vsliveshare\"\n", + "\t\t\t]\n", + "\t\t}\n", + "\t},\n", + "\t\"workspaceFolder\": \"/home/app/\",\n", + " \t\"postCreateCommand\": \"cd /home/app/viz && export CXX=$(which gcc) && npm install\",\n", + " \"workspaceMount\": \"source=${localWorkspaceFolder},target=/home/app/,type=bind,consistency=cached\"\n", + "}\n" + ] + } + ], + "source": [ + "!cat ../../.devcontainer/devcontainer.json" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "9.2.0\n" + ] + } + ], + "source": [ + "!npm --version" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "v18.13.0\n" + ] + } + ], + "source": [ + "!node --version" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "# Build stage with Spack pre-installed and ready to be used\n", + "FROM spack/ubuntu-jammy as builder\n", + "\n", + "# Install OS packages needed to build the software\n", + "RUN apt-get -yqq update && apt-get -yqq upgrade \\\n", + " && apt-get -yqq install autoconf \\\n", + " && rm -rf /var/lib/apt/lists/*\n", + "\n", + "# What we want to install and how we want to install it\n", + "# is specified in a manifest file (spack.yaml)\n", + "RUN mkdir /opt/spack-environment \\\n", + "&& (echo spack: \\\n", + "&& echo ' specs:' \\\n", + "&& echo ' - exago@1.6.0+ipopt+python+mpi' \\\n", + "&& echo ' - petsc~fortran~hdf5~hypre+metis' \\\n", + "&& echo ' - ipopt@3.12.10+coinhsl~mumps+metis' \\\n", + "&& echo ' - coinhsl@2019.05.21+blas' \\\n", + "&& echo ' - py-jupyterlab' \\\n", + "&& echo ' - py-ipyparallel' \\\n", + "&& echo ' concretizer:' \\\n", + "&& echo ' unify: true' \\\n", + "&& echo ' reuse: true' \\\n", + "&& echo ' mirrors:' \\\n", + "&& echo ' spack: https://binaries.spack.io/develop' \\\n", + "&& echo ' packages:' \\\n", + "&& echo ' all:' \\\n", + "&& echo ' providers:' \\\n", + "&& echo ' mpi:' \\\n", + "&& echo ' - openmpi' \\\n", + "&& echo ' zlib-api:' \\\n", + "&& echo ' - zlib' \\\n", + "&& echo ' zlib-ng:' \\\n", + "&& echo ' buildable: false' \\\n", + "&& echo ' config:' \\\n", + "&& echo ' install_tree: /opt/software' \\\n", + "&& echo ' view: /opt/views/view') > /opt/spack-environment/spack.yaml\n", + "\n", + "# This is manual, and required to build Ipopt\n", + "COPY coinhsl-archive-2019.05.21.tar.gz /opt/spack-environment/coinhsl-archive-2019.05.21.tar.gz\n", + "\n", + "# Find external packages\n", + "RUN cd /opt/spack-environment && spack env activate . && spack external find --all\n", + "\n", + "# Do this separate of install to cache keys...\n", + "RUN cd /opt/spack-environment && spack env activate . && spack mirror add develop https://binaries.spack.io/develop && spack buildcache keys --install --trust && spack concretize -f && spack mirror create -a\n", + "\n", + "# Install Ipopt w/ CoinHSL (and other deps) in stages to cache builds\n", + "RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast ipopt\n", + "\n", + "# Install PETSc \n", + "RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast petsc\n", + "\n", + "# Install py-jupyterlab\n", + "RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast py-jupyterlab\n", + "\n", + "# Install py-ipyparallel\n", + "RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast py-ipyparallel\n", + "\n", + "# Install the software, remove unnecessary deps\n", + "RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast && spack gc -y\n", + "\n", + "# Strip all the binaries\n", + "RUN find -L /opt/views/view/* -type f -exec readlink -f '{}' \\; | \\\n", + " xargs file -i | \\\n", + " grep 'charset=binary' | \\\n", + " grep 'x-executable\\|x-archive\\|x-sharedlib' | \\\n", + " awk -F: '{print $1}' | xargs strip\n", + "\n", + "# Modifications to the environment that are necessary to run\n", + "RUN cd /opt/spack-environment && \\\n", + " spack env activate --sh -d . > activate.sh\n", + "\n", + "\n", + "# Bare OS image to run the installed executables\n", + "FROM mcr.microsoft.com/devcontainers/python:3.11-bookworm\n", + "\n", + "COPY --from=builder /opt/spack-environment /opt/spack-environment\n", + "COPY --from=builder /opt/software /opt/software\n", + "\n", + "# paths.view is a symlink, so copy the parent to avoid dereferencing and duplicating it\n", + "COPY --from=builder /opt/views /opt/views\n", + "\n", + "RUN { \\\n", + " echo '#!/bin/sh' \\\n", + " && echo '.' /opt/spack-environment/activate.sh \\\n", + " && echo 'exec \"$@\"'; \\\n", + " } > /entrypoint.sh \\\n", + "&& chmod a+x /entrypoint.sh \\\n", + "&& ln -s /opt/views/view /opt/view\n", + "\n", + "\n", + "RUN apt-get -yqq update && apt-get -yqq upgrade \\\n", + " && apt-get -yqq install gfortran nodejs npm \\\n", + " && rm -rf /var/lib/apt/lists/*\n", + "ENTRYPOINT [ \"/entrypoint.sh\" ]\n", + "CMD [ \"/bin/bash\" ]\n", + "\n", + "# Make sure devcontainer user gets spack packages\n", + "RUN echo \"source /entrypoint.sh\" >> /home/vscode/.bashrc\n", + "\n", + "# Install the Jupyter kernel\n", + "RUN . /entrypoint.sh && \\\n", + " python3 -m ipykernel install \\\n", + " --name py311-exago \\\n", + " --display-name \"ExaGO\" \\\n", + " --prefix=\n", + "\n", + "# Install the mpi4py Jupyter kernel\n", + "RUN . /entrypoint.sh && \\\n", + " python3 -m ipykernel install \\\n", + " --name py311-mpi4py-exago \\\n", + " --display-name \"ExaGO w/ MPI\" \\\n", + " --prefix=\n", + "\n", + "# Make modifications that are necessary to run mpi4py in kernelspec\n", + "RUN sed -i 's/\\\"\\/opt\\/views\\/view\\/bin\\/python3\\\"/\\\"mpiexec\\\", \\\"-n\\\", \\\"1\\\", \\\"\\/opt\\/views\\/view\\/bin\\/python3\\\"/g' /usr/local/share/jupyter/kernels/py311-mpi4py-exago/kernel.json\n", + "\n", + "# Configure user for container\n", + "USER vscode\n" + ] + } + ], + "source": [ + "!cat ../../.devcontainer/Dockerfile" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "ExaGO", + "language": "python", + "name": "py311-exago" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/viz/backend/requirements.txt b/viz/backend/requirements.txt index dcfd4d3f370a35f1e8e213191686640c85dad99f..0072edda7d06a8a4abf689e682ed94bc8eea9843 100644 GIT binary patch delta 29 kcmbO&+Aq3c6(e^tLq01V78f`qk#zk@Nx-| diff --git a/viz/package.json b/viz/package.json index 9023e1d4..f789846f 100644 --- a/viz/package.json +++ b/viz/package.json @@ -1,62 +1,62 @@ { "name": "geojson", - "version": "0.0.0", - "livscode-file://vscode-app/c:/Users/jins176/AppData/Local/Programs/Microsoft%20VS%20Code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.htmlcense": "MIT", - + "version": "0.1.0", "scripts": { + "prepare": "cd .. && husky install", "start-local": "webpack-dev-server --env.local --progress --hot --open", "start": "webpack-dev-server --progress --hot --open " }, "dependencies": { - "@emotion/react": "^11.9.0", - "@emotion/styled": "^11.8.1", - "@flowmap.gl/data": "^8.0.0-alpha.25", - "@flowmap.gl/layers": "^8.0.0-alpha.25", - "@mui/icons-material": "^5.6.2", - "@mui/material": "^5.6.4", - "@turf/turf": "^5.1.6", - "babel-preset-env": "^1.7.0", - "babel-preset-es2015": "^6.24.1", - "bootstrap": "^5.3.0", - "buffer": "^6.0.3", - "chart.js": "^3.5.0", - "core-js": "^3.31.1", - "d3": "^7.8.5", - "d3-scale": "^2.0.0", - "deck.gl": "^8.9.19", - "dotenv": "^16.3.1", - "hnswlib-node": "^1.4.2", - "http": "^0.0.1-security", - "https": "^1.0.0", - "langchain": "^0.0.75", - "net": "^1.0.2", - "node-fetch": "^2.6.12", - "node-gyp": "^9.3.0", - "pg": "^8.11.1", - "react": "^18.1.0", - "react-bootstrap": "^2.8.0", - "react-chartjs-2": "^4.1.0", - "react-chat-widget": "^3.1.4", - "react-dom": "^18.1.0", - "react-map-gl": "^5.3.21", - "react-widgets": "^5.8.4", - "sass": "^1.63.6", - "stream": "^0.0.2", - "typeorm": "^0.3.17", - "url": "^0.11.1", - "us": "^2.0.0", - "util": "^0.12.5", - "webpack-node-externals": "^3.0.0", - "zlib": "^1.0.5" + "@emotion/react": "", + "@emotion/styled": "", + "@flowmap.gl/data": "", + "@flowmap.gl/layers": "", + "@mui/icons-material": "", + "@mui/material": "", + "@turf/turf": "", + "babel-preset-env": "", + "babel-preset-es2015": "", + "bootstrap": "", + "buffer": "", + "chart.js": "", + "core-js": "", + "d3": "", + "d3-scale": "", + "deck.gl": "", + "dotenv": "", + "hnswlib-node": "", + "http": "", + "https": "", + "husky": "", + "langchain": "", + "net": "", + "node-fetch": "", + "node-gyp": "", + "pg": "", + "react": "", + "react-bootstrap": "", + "react-chartjs-2": "", + "react-chat-widget": "", + "react-dom": "", + "react-map-gl": "", + "react-widgets": "", + "sass": "", + "stream": "", + "typeorm": "", + "url": "", + "us": "", + "util": "", + "webpack-node-externals": "", + "zlib": "" }, "devDependencies": { - "@babel/core": "^7.4.0", - "@babel/preset-react": "^7.0.0", - "babel-loader": "^8.0.5", - "cross-env": "^7.0.3", - "typescript": "^5.1.6", - "webpack": "^4.20.2", - "webpack-cli": "^3.1.2", - "webpack-dev-server": "^3.1.1" + "@babel/core": "", + "@babel/preset-react": "", + "babel-loader": "", + "cross-env": "", + "typescript": "", + "webpack": "", + "webpack-cli": "", + "webpack-dev-server": "" } } From c0a957b1659e577b6689192c23aed9c32e8a1e8e Mon Sep 17 00:00:00 2001 From: "Rutherford, Cameron" Date: Thu, 9 Nov 2023 19:24:53 -0500 Subject: [PATCH 2/7] Add building viz with static node version. --- .devcontainer/Dockerfile | 10 +- .../create_dockerfile_devcontainer.sh | 15 +- .devcontainer/devcontainer.json | 1 - docs/devcontainer/viz-tutorial.ipynb | 243 +++++++++++++++--- viz/package.json | 102 ++++---- 5 files changed, 272 insertions(+), 99 deletions(-) diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index 484d07b8..6b013195 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -39,7 +39,7 @@ RUN mkdir /opt/spack-environment \ COPY coinhsl-archive-2019.05.21.tar.gz /opt/spack-environment/coinhsl-archive-2019.05.21.tar.gz # Find external packages -RUN cd /opt/spack-environment && spack env activate . && spack external find --all +RUN cd /opt/spack-environment && spack env activate . && spack external find --all --exclude python # Do this separate of install to cache keys... RUN cd /opt/spack-environment && spack env activate . && spack mirror add develop https://binaries.spack.io/develop && spack buildcache keys --install --trust && spack concretize -f && spack mirror create -a @@ -90,7 +90,7 @@ RUN { \ RUN apt-get -yqq update && apt-get -yqq upgrade \ - && apt-get -yqq install gfortran nodejs npm \ + && apt-get -yqq install gfortran npm \ && rm -rf /var/lib/apt/lists/* ENTRYPOINT [ "/entrypoint.sh" ] CMD [ "/bin/bash" ] @@ -117,3 +117,9 @@ RUN sed -i 's/\"\/opt\/views\/view\/bin\/python3\"/\"mpiexec\", \"-n\", \"1\", \ # Configure user for container USER vscode + +# Install nvm +RUN mkdir -p /home/vscode/nvm && cd /home/vscode/nvm && curl -O https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.1/install.sh +RUN chown vscode /home/vscode/nvm/install.sh && chmod +x /home/vscode/nvm/install.sh + +# Install NodeJS version 16.13.0 with nvm diff --git a/.devcontainer/create_dockerfile_devcontainer.sh b/.devcontainer/create_dockerfile_devcontainer.sh index 2f2e285e..ac3e34b1 100755 --- a/.devcontainer/create_dockerfile_devcontainer.sh +++ b/.devcontainer/create_dockerfile_devcontainer.sh @@ -59,7 +59,6 @@ spack: - autoconf final: - gfortran - - nodejs - npm packages: all: @@ -81,7 +80,7 @@ spack containerize > ./.devcontainer/Dockerfile sed -i "" "s|# Install the software|# This is manual, and required to build Ipopt\nCOPY coinhsl-archive-2019.05.21.tar.gz /opt/spack-environment/coinhsl-archive-2019.05.21.tar.gz\n\n# Install the software|" ./.devcontainer/Dockerfile # Find external packages -sed -i "" "s|# Install the software|# Find external packages\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack external find --all\n\n# Install the software|" ./.devcontainer/Dockerfile +sed -i "" "s|# Install the software|# Find external packages\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack external find --all --exclude python\n\n# Install the software|" ./.devcontainer/Dockerfile # Also trusts the build cache and create source mirror sed -i "" "s|# Install the software|# Do this separate of install to cache keys...\nRUN cd /opt/spack-environment \&\& spack env activate . \&\& spack mirror add develop https://binaries.spack.io/develop \&\& spack buildcache keys --install --trust \&\& spack concretize -f \&\& spack mirror create -a\n\n# Install the software|" ./.devcontainer/Dockerfile @@ -123,3 +122,15 @@ echo "RUN sed -i 's/\\\"\/opt\/views\/view\/bin\/python3\\\"/\\\"mpiexec\\\", \\ echo "" >> ./.devcontainer/Dockerfile echo "# Configure user for container" >> ./.devcontainer/Dockerfile echo "USER vscode" >> ./.devcontainer/Dockerfile + +# Install nvm for VSCode user +echo "" >> ./.devcontainer/Dockerfile +echo "# Install nvm" >> ./.devcontainer/Dockerfile +echo "RUN mkdir -p /home/vscode/nvm && cd /home/vscode/nvm && curl -O https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.1/install.sh" >> ./.devcontainer/Dockerfile +echo "RUN chown vscode /home/vscode/nvm/install.sh && chmod +x /home/vscode/nvm/install.sh" >> ./.devcontainer/Dockerfile + +# Install NodeJS version 16.13.0 with nvm +echo "" >> ./.devcontainer/Dockerfile +echo "# Install NodeJS version 16.13.0 with nvm" >> ./.devcontainer/Dockerfile +#echo "RUN . /opt/nvm/nvm.sh && \\" >> ./.devcontainer/Dockerfile +#echo " nvm install v16.13.0" >> ./.devcontainer/Dockerfile diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 34dcfff4..134760f6 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -15,6 +15,5 @@ } }, "workspaceFolder": "/home/app/", - "postCreateCommand": "cd /home/app/viz && export CXX=$(which gcc) && npm install", "workspaceMount": "source=${localWorkspaceFolder},target=/home/app/,type=bind,consistency=cached" } diff --git a/docs/devcontainer/viz-tutorial.ipynb b/docs/devcontainer/viz-tutorial.ipynb index 6c29446d..d02d562f 100644 --- a/docs/devcontainer/viz-tutorial.ipynb +++ b/docs/devcontainer/viz-tutorial.ipynb @@ -65,65 +65,224 @@ }, { "cell_type": "code", - "execution_count": 25, + "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "\u001b[K\u001b[?25hm##################\u001b[0m) ⠴ reify:fsevents: \u001b[7msill\u001b[0m \u001b[35mreify\u001b[0m mark deleted [ '/home/app/viz\u001b[0m\u001b[Ks\u001b[0m\u001b[K\n", - "> geojson@0.1.0 prepare\n", - "> cd .. && husky install\n", - "\n", - "husky - Git hooks installed\n", - "\n", - "up to date, audited 1131 packages in 4s\n", - "\n", - "222 packages are looking for funding\n", + "v18.13.0\n" + ] + } + ], + "source": [ + "!node --version" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Downloading and installing node v16.13.0...\n", + "Downloading https://nodejs.org/dist/v16.13.0/node-v16.13.0-linux-x64.tar.xz...\n", + "######################################################################### 100.0% 43.7%\n", + "Computing checksum with sha256sum\n", + "Checksums matched!\n", + "Now using node v16.13.0 (npm v8.1.0)\n", + "Now using node v16.13.0 (npm v8.1.0)\n", + "v16.13.0\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency0m\u001b[Kin 1ms\u001b[0m\u001b[K[K\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m^17.0.2\u001b[22m\" from \u001b[1mreact-chat-widget\u001b[22m@\u001b[1m3.1.4\u001b[22m\u001b[2m\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-chat-widget\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m 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\u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m17.0.2\u001b[22m\" from \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^17.0.2\u001b[22m\" from \u001b[1mreact-chat-widget\u001b[22m@\u001b[1m3.1.4\u001b[22m\u001b[2m\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-chat-widget\u001b[22m\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-chat-widget\u001b[22m@\"\u001b[1m^3.1.4\u001b[22m\" from the root project\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency0m ROOT quickselect@1.1.1 OK\u001b[0m\u001b[Km\u001b[K\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m Unsupported engine {midealTree:node_modules/micromat\u001b[0m\u001b[Km\u001b[Kenc\u001b[0m\u001b[K\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m package: 'langchain@0.0.75',\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m required: { node: '>=18' },\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m current: { node: 'v16.13.0', npm: '8.1.0' }\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m }\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m Unsupported engine {\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m package: '@fortaine/fetch-event-source@3.0.6',\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m required: { node: '>=16.15' },\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m current: { node: 'v16.13.0', npm: '8.1.0' }\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m }\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m urix@0.1.0: Please see https://github.com/lydell/urix#deprecated\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated[0m\u001b[K\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m @npmcli/move-file@2.0.1: This functionality has been moved to @npmcli/fsK\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies\n", + "\u001b[K\u001b[?25hm##################\u001b[0m⸩ ⠸ reify:chart.js: \u001b[32;40mhttp\u001b[0m \u001b[35mfetch\u001b[0m GET 200 https://registry.npmj\u001b[0m\u001b[Ky.npmj\u001b[0m\u001b[Kdar\u001b[0m\u001b[K\n", + "added 485 packages, removed 180 packages, changed 209 packages, and audited 1436 packages in 2m\n", + "\n", + "91 packages are looking for funding\n", " run `npm fund` for details\n", "\n", - "2 \u001b[33m\u001b[1mmoderate\u001b[22m\u001b[39m severity vulnerabilities\n", + "\u001b[31m\u001b[1m13\u001b[22m\u001b[39m vulnerabilities (1 \u001b[1mlow\u001b[22m, 3 \u001b[33m\u001b[1mmoderate\u001b[22m\u001b[39m, 9 \u001b[31m\u001b[1mhigh\u001b[22m\u001b[39m)\n", "\n", - "To address all issues, run:\n", + "To address issues that do not require attention, run:\n", " npm audit fix\n", "\n", + "To address all issues (including breaking changes), run:\n", + " npm audit fix --force\n", + "\n", "Run `npm audit` for details.\n", "\n", - "> geojson@0.1.0 start\n", + "> geojson@0.0.0 start\n", "> webpack-dev-server --progress --hot --open\n", "\n", - "[webpack-cli] \u001b[31mError: Cannot find module '../../webpack.config.local'\n", - "Require stack:\n", - "- /home/app/viz/webpack.config.js\n", - "- /home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js\n", - "- /home/app/viz/node_modules/webpack-cli/lib/bootstrap.js\n", - "- /home/app/viz/node_modules/webpack-cli/bin/cli.js\n", - "- /home/app/viz/node_modules/webpack-dev-server/bin/webpack-dev-server.js\n", - " at Module._resolveFilename (node:internal/modules/cjs/loader:1039:15)\n", - " at Module._load (node:internal/modules/cjs/loader:885:27)\n", - " at Module.require (node:internal/modules/cjs/loader:1105:19)\n", - " at require (node:internal/modules/cjs/helpers:103:18)\n", - " at module.exports (/home/app/viz/webpack.config.js:40:32)\n", - " at loadConfigByPath (/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js:1445:37)\n", - " at async WebpackCLI.loadConfig (/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js:1515:38)\n", - " at async WebpackCLI.createCompiler (/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js:1781:22)\n", - " at async Command. (/home/app/viz/node_modules/@webpack-cli/serve/lib/index.js:81:30)\n", - " at async Command.parseAsync (/home/app/viz/node_modules/webpack-cli/node_modules/commander/lib/command.js:935:5) {\n", - " code: 'MODULE_NOT_FOUND',\n", - " requireStack: [\n", - " '/home/app/viz/webpack.config.js',\n", - " '/home/app/viz/node_modules/webpack-cli/lib/webpack-cli.js',\n", - " '/home/app/viz/node_modules/webpack-cli/lib/bootstrap.js',\n", - " '/home/app/viz/node_modules/webpack-cli/bin/cli.js',\n", - " '/home/app/viz/node_modules/webpack-dev-server/bin/webpack-dev-server.js'\n", - " ]\n", - "}\u001b[39m\n" + "\u001b[1m10% building 1/1 modules 0 active\u001b[39m\u001b[22m\u001b[34mℹ\u001b[39m \u001b[90m｢wds｣\u001b[39m: Project is running at \u001b[1m\u001b[34mhttp://localhost:8080/\u001b[39m\u001b[22m\n", + "\u001b[34mℹ\u001b[39m \u001b[90m｢wds｣\u001b[39m: webpack output is served from \u001b[1m\u001b[34m/\u001b[39m\u001b[22m\n", + "\u001b[34mℹ\u001b[39m \u001b[90m｢wds｣\u001b[39m: Content not from webpack is served from \u001b[1m\u001b[34m/home/app/viz\u001b[39m\u001b[22m\n", + "\u001b[1m11% building 13/16 modules 3 active ...r/client/utils/getCurrentScriptSource.js\u001b[39m\u001b[22m\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: wait until bundle finished: /\n", + "\u001b[1m69% building 9250/9296 modules 46 active 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+ "Version: webpack \u001b[1m4.47.0\u001b[39m\u001b[22m\n", + "Time: \u001b[1m111363\u001b[39m\u001b[22mms\n", + "Built at: 11/10/2023 \u001b[1m12:21:58 AM\u001b[39m\u001b[22m\n", + " \u001b[1mAsset\u001b[39m\u001b[22m \u001b[1mSize\u001b[39m\u001b[22m \u001b[1mChunks\u001b[39m\u001b[22m \u001b[1m\u001b[39m\u001b[22m \u001b[1m\u001b[39m\u001b[22m\u001b[1mChunk Names\u001b[39m\u001b[22m\n", + " \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m 45.7 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted]\u001b[39m\u001b[22m app\n", + "\u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m 20.8 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [dev]\u001b[39m\u001b[22m app\n", + "Entrypoint \u001b[1mapp\u001b[39m\u001b[22m = \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m \u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m\n", + "[0] \u001b[1mmulti (webpack)-dev-server/client?http://localhost:8080 (webpack)/hot/dev-server.js ./app.js\u001b[39m\u001b[22m 52 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[\u001b[1m./app.js\u001b[39m\u001b[22m] 44.1 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[\u001b[1m./module_casedata.js\u001b[39m\u001b[22m] 354 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[\u001b[1m./node_modules/@deck.gl/core/dist/esm/index.js\u001b[39m\u001b[22m] 3.49 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[\u001b[1m./node_modules/@deck.gl/extensions/dist/esm/index.js\u001b[39m\u001b[22m] 795 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[\u001b[1m./node_modules/@deck.gl/layers/dist/esm/index.js\u001b[39m\u001b[22m] 1.14 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + 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"[\u001b[1m./node_modules/@mui/icons-material/esm/index.js\u001b[39m\u001b[22m] 688 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[\u001b[1m./node_modules/@mui/material/Accordion/index.js\u001b[39m\u001b[22m] 155 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[./node_modules/webpack-dev-server/client/index.js?http://localhost:8080] \u001b[1m(webpack)-dev-server/client?http://localhost:8080\u001b[39m\u001b[22m 4.29 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + "[./node_modules/webpack/hot/dev-server.js] \u001b[1m(webpack)/hot/dev-server.js\u001b[39m\u001b[22m 1.59 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", + " + 12868 hidden modules\n", + "\n", + "\u001b[1m\u001b[31mERROR in ./node_modules/@flowmap.gl/layers/dist/FlowmapLayer.js 49:40\n", + "Module parse failed: Unexpected token (49:40)\n", + "You may need an appropriate loader to handle this file type, currently no loaders are configured to process this file. See https://webpack.js.org/concepts#loaders\n", + "| if (onHover) {\n", + "| this._getFlowmapLayerPickingInfo(info).then((info) => {\n", + "> if ((this.state?.lastHoverTime ?? 0) <= startTime) {\n", + "| this.setState({ pickingInfo: info });\n", + "| onHover(info, event);\n", + " @ ./node_modules/@flowmap.gl/layers/dist/index.js 9:0-57 9:0-57\n", + " @ ./app.js\u001b[39m\u001b[22m\n", + "\n", + "\u001b[1m\u001b[31mERROR in ./node_modules/@flowmap.gl/layers/dist/AnimatedFlowLinesLayer/AnimatedFlowLinesLayer.js 76:29\n", + "Module parse failed: Unexpected token (76:29)\n", + "You may need an appropriate loader to handle this file type, currently no loaders are configured to process this file. See https://webpack.js.org/concepts#loaders\n", + "| if (changeFlags.extensionsChanged) {\n", + "| const { gl } = this.context;\n", + "> this.state.model?.delete();\n", + "| this.state.model = this._getModel(gl);\n", + "| this.getAttributeManager().invalidateAll();\n", + " @ ./node_modules/@flowmap.gl/layers/dist/AnimatedFlowLinesLayer/index.js 6:0-62 7:15-37\n", + " @ ./node_modules/@flowmap.gl/layers/dist/index.js\n", + " @ ./app.js\u001b[39m\u001b[22m\n", + "\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: Failed to compile.\n" + ] + }, + { + "ename": "", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[1;31mThe Kernel crashed while executing code in the the current cell or a previous cell. Please review the code in the cell(s) to identify a possible cause of the failure. Click here for more info. View Jupyter log for further details." ] } ], "source": [ - "!cd ../../viz && npm install && npm start" + "!cd /home/app/viz && . /usr/local/share/nvm/nvm.sh && nvm install 16.13.0 && nvm use 16.13.0 && node --version && npm install && npm start" ] }, { @@ -499,9 +658,9 @@ ], "metadata": { "kernelspec": { - "display_name": "ExaGO", + "display_name": "ExaGO w/ MPI", "language": "python", - "name": "py311-exago" + "name": "py311-mpi4py-exago" }, "language_info": { "codemirror_mode": { diff --git a/viz/package.json b/viz/package.json index f789846f..9859f96b 100644 --- a/viz/package.json +++ b/viz/package.json @@ -1,62 +1,60 @@ { "name": "geojson", - "version": "0.1.0", + "version": "0.0.0", "scripts": { - "prepare": "cd .. && husky install", "start-local": "webpack-dev-server --env.local --progress --hot --open", "start": "webpack-dev-server --progress --hot --open " }, "dependencies": { - "@emotion/react": "", - "@emotion/styled": "", - "@flowmap.gl/data": "", - "@flowmap.gl/layers": "", - "@mui/icons-material": "", - "@mui/material": "", - "@turf/turf": "", - "babel-preset-env": "", - "babel-preset-es2015": "", - "bootstrap": "", - "buffer": "", - "chart.js": "", - "core-js": "", - "d3": "", - "d3-scale": "", - "deck.gl": "", - "dotenv": "", - "hnswlib-node": "", - "http": "", - "https": "", - "husky": "", - "langchain": "", - "net": "", - "node-fetch": "", - "node-gyp": "", - "pg": "", - "react": "", - "react-bootstrap": "", - "react-chartjs-2": "", - "react-chat-widget": "", - "react-dom": "", - "react-map-gl": "", - "react-widgets": "", - "sass": "", - "stream": "", - "typeorm": "", - "url": "", - "us": "", - "util": "", - "webpack-node-externals": "", - "zlib": "" + "@emotion/react": "^11.9.0", + "@emotion/styled": "^11.8.1", + "@flowmap.gl/data": "^8.0.0-alpha.25", + "@flowmap.gl/layers": "^8.0.0-alpha.25", + "@mui/icons-material": "^5.6.2", + "@mui/material": "^5.6.4", + "@turf/turf": "^5.1.6", + "babel-preset-env": "^1.7.0", + "babel-preset-es2015": "^6.24.1", + "bootstrap": "^5.3.0", + "buffer": "^6.0.3", + "chart.js": "^3.5.0", + "core-js": "^3.31.1", + "d3": "^7.8.5", + "d3-scale": "^2.0.0", + "deck.gl": "^8.9.19", + "dotenv": "^16.3.1", + "hnswlib-node": "^1.4.2", + "http": "^0.0.1-security", + "https": "^1.0.0", + "langchain": "^0.0.75", + "net": "^1.0.2", + "node-fetch": "^2.6.12", + "node-gyp": "^9.3.0", + "pg": "^8.11.1", + "react": "^18.1.0", + "react-bootstrap": "^2.8.0", + "react-chartjs-2": "^4.1.0", + "react-chat-widget": "^3.1.4", + "react-dom": "^18.1.0", + "react-map-gl": "^5.3.21", + "react-widgets": "^5.8.4", + "sass": "^1.63.6", + "stream": "^0.0.2", + "typeorm": "^0.3.17", + "url": "^0.11.1", + "us": "^2.0.0", + "util": "^0.12.5", + "webpack-node-externals": "^3.0.0", + "zlib": "^1.0.5" }, "devDependencies": { - "@babel/core": "", - "@babel/preset-react": "", - "babel-loader": "", - "cross-env": "", - "typescript": "", - "webpack": "", - "webpack-cli": "", - "webpack-dev-server": "" + "@babel/core": "^7.4.0", + "@babel/preset-react": "^7.0.0", + "babel-loader": "^8.0.5", + "cross-env": "^7.0.3", + "typescript": "^5.1.6", + "webpack": "^4.20.2", + "webpack-cli": "^3.1.2", + "webpack-dev-server": "^3.1.1" } -} +} \ No newline at end of file From e08fe58194645de924256257e526b64db2af9711 Mon Sep 17 00:00:00 2001 From: cameronrutherford Date: Fri, 10 Nov 2023 00:28:04 +0000 Subject: [PATCH 3/7] Apply pre-commmit fixes --- viz/package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/viz/package.json b/viz/package.json index 9859f96b..6c8d39cc 100644 --- a/viz/package.json +++ b/viz/package.json @@ -57,4 +57,4 @@ "webpack-cli": "^3.1.2", "webpack-dev-server": "^3.1.1" } -} \ No newline at end of file +} From 0da263896e0e6cf3456b407c591c247275758b78 Mon Sep 17 00:00:00 2001 From: Cameron Rutherford Date: Fri, 10 Nov 2023 08:46:27 -0500 Subject: [PATCH 4/7] Update README.md --- docs/devcontainer/README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/docs/devcontainer/README.md b/docs/devcontainer/README.md index ec90b952..ae503b71 100644 --- a/docs/devcontainer/README.md +++ b/docs/devcontainer/README.md @@ -7,6 +7,10 @@ 1. open your local clone of exago in VSCode 1. copy the CoinHSL 2019 tarball to the top level of your exago directory +## Generate the container + +Spack is used to generate the base image, with some sed/echo commands used to fine-tune Dockerfile for use case within a Dev Container. Run `.devcontainer/create_dockerfile.sh` in order to re-generate the Dockerfile. This should be done semi-frequently whenever a spack version or exago version needs updating. + ## Build Container The build info for this container is in `.devcontainer/`. There is a Dockerfile and json file associated with the configuration. From 94056ad9ae8f0f3dc09520fbdb5be46dbadfedde Mon Sep 17 00:00:00 2001 From: "Rutherford, Cameron" Date: Fri, 10 Nov 2023 13:08:11 -0500 Subject: [PATCH 5/7] Add working frontend without ChatGrid. --- .devcontainer/Dockerfile | 2 +- .../create_dockerfile_devcontainer.sh | 1 + .gitignore | 1 + docs/devcontainer/mpi4py-tutorial.ipynb | 35 ++- docs/devcontainer/viz-tutorial.ipynb | 252 ++++-------------- viz/app.js | 36 +-- 6 files changed, 99 insertions(+), 228 deletions(-) diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index 6b013195..1fbbd26e 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -90,7 +90,7 @@ RUN { \ RUN apt-get -yqq update && apt-get -yqq upgrade \ - && apt-get -yqq install gfortran npm \ + && apt-get -yqq install gfortran npm postgresql \ && rm -rf /var/lib/apt/lists/* ENTRYPOINT [ "/entrypoint.sh" ] CMD [ "/bin/bash" ] diff --git a/.devcontainer/create_dockerfile_devcontainer.sh b/.devcontainer/create_dockerfile_devcontainer.sh index ac3e34b1..2be7ddc9 100755 --- a/.devcontainer/create_dockerfile_devcontainer.sh +++ b/.devcontainer/create_dockerfile_devcontainer.sh @@ -60,6 +60,7 @@ spack: final: - gfortran - npm + - postgresql packages: all: providers: diff --git a/.gitignore b/.gitignore index d572d225..fad03d2d 100644 --- a/.gitignore +++ b/.gitignore @@ -14,3 +14,4 @@ package-lock.json config.py spack_* hiop/ +solution diff --git a/docs/devcontainer/mpi4py-tutorial.ipynb b/docs/devcontainer/mpi4py-tutorial.ipynb index 344c0946..4d13039c 100644 --- a/docs/devcontainer/mpi4py-tutorial.ipynb +++ b/docs/devcontainer/mpi4py-tutorial.ipynb @@ -135,7 +135,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 4, "metadata": {}, "outputs": [ { @@ -144,12 +144,12 @@ "text": [ "/home/app\n", "/home/app\n", - "Starting 4 engines with \n", - "100%|██████████| 4/4 [00:05<00:00, 1.48s/engine]\n", - "Stopping engine(s): 1699501347\n", - "engine set stopped 1699501347: {'exit_code': 59, 'pid': 35775, 'identifier': 'ipengine-1699501346-0x7o-1699501347-35554'}\n", + "Starting 1 engines with \n", + "100%|██████████| 1/1 [00:06<00:00, 6.02s/engine]\n", + "Stopping engine(s): 1699625249\n", + "engine set stopped 1699625249: {'exit_code': 15, 'pid': 4000, 'identifier': 'ipengine-1699625248-oea1-1699625249-2295'}\n", "Stopping controller\n", - "Controller stopped: {'exit_code': 0, 'pid': 35742, 'identifier': 'ipcontroller-1699501346-0x7o-35554'}\n" + "Controller stopped: {'exit_code': 0, 'pid': 3989, 'identifier': 'ipcontroller-1699625248-oea1-2295'}\n" ] } ], @@ -163,24 +163,33 @@ "def run_exago():\n", " from mpi4py import MPI\n", " import exago\n", + " import os\n", " comm = MPI.COMM_WORLD\n", " rank = comm.Get_rank()\n", " exago.initialize(\"app\", comm)\n", - " opf = exago.OPFLOW()\n", - " opf.read_mat_power_data('./datafiles/case9/case9mod.m')\n", - " opf.solve()\n", + " scopf = exago.SCOPFLOW()\n", + " path = exago.prefix()\n", + " scopf.set_network_data(\n", + " os.path.join(path, 'share', 'exago', 'datafiles', 'case9', 'case9mod.m'))\n", + " scopf.set_contingency_data(\n", + " os.path.join(path, 'share', 'exago', 'datafiles', 'case9', 'case9.cont'),\n", + " exago.ContingencyFileInputFormat.NATIVE)\n", + " scopf.set_num_contingencies(4)\n", + " # set solver HIOP\n", + " # subproblem solver IPOPT\n", + " scopf.set_solver(\"IPOPT\")\n", + " scopf.solve()\n", + "\n", "\n", " comm.barrier()\n", "\n", - " if rank == 0:\n", - " # opf.print_solution()\n", - " opf.save_solution(exago.OutputFormat.JSON, 'solution')\n", + " scopf.save_solution_all(exago.OutputFormat.JSON, 'solution')\n", "\n", " # exago.finalize()\n", " comm.barrier()\n", "\n", "# request an MPI cluster with 24 engines\n", - "with ipp.Cluster(controller_ip=\"*\", engines=\"mpi\", n=4) as rc:\n", + "with ipp.Cluster(controller_ip=\"*\", engines=\"mpi\", n=1) as rc:\n", " # get a broadcast_view on the cluster which is best\n", " # suited for MPI style computation\n", " view = rc.broadcast_view()\n", diff --git a/docs/devcontainer/viz-tutorial.ipynb b/docs/devcontainer/viz-tutorial.ipynb index d02d562f..1a32379d 100644 --- a/docs/devcontainer/viz-tutorial.ipynb +++ b/docs/devcontainer/viz-tutorial.ipynb @@ -65,146 +65,34 @@ }, { "cell_type": "code", - "execution_count": 2, - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "v18.13.0\n" - ] - } - ], - "source": [ - "!node --version" - ] - }, - { - "cell_type": "code", - "execution_count": 8, + "execution_count": 1, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Downloading and installing node v16.13.0...\n", - "Downloading https://nodejs.org/dist/v16.13.0/node-v16.13.0-linux-x64.tar.xz...\n", - "######################################################################### 100.0% 43.7%\n", - "Computing checksum with sha256sum\n", - "Checksums matched!\n", + "v16.13.0 is already installed.\n", "Now using node v16.13.0 (npm v8.1.0)\n", "Now using node v16.13.0 (npm v8.1.0)\n", "v16.13.0\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency0m\u001b[Kin 1ms\u001b[0m\u001b[K[K\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m^17.0.2\u001b[22m\" from \u001b[1mreact-chat-widget\u001b[22m@\u001b[1m3.1.4\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-chat-widget\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-chat-widget\u001b[22m@\"\u001b[1m^3.1.4\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m17.0.2\u001b[22m\" from \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m17.0.2\u001b[22m\" from \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m17.0.2\u001b[22m\" from \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m17.0.2\u001b[22m\" from \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 27 more (@deck.gl/react, @emotion/react, @emotion/styled, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact\u001b[22m@\"\u001b[1m17.0.2\u001b[22m\" from \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m While resolving: \u001b[1mgeojson\u001b[22m@\u001b[1m0.0.0\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Found: \u001b[1mreact-dom\u001b[22m@\u001b[1m17.0.2\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-dom\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^18.1.0\u001b[22m\" from the root project\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m 10 more (@deck.gl/react, @floating-ui/react-dom, @mui/base, ...)\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m Could not resolve dependency:\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[35mpeer\u001b[39m \u001b[1mreact-dom\u001b[22m@\"\u001b[1m^17.0.2\u001b[22m\" from \u001b[1mreact-chat-widget\u001b[22m@\u001b[1m3.1.4\u001b[22m\u001b[2m\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[2mnode_modules/react-chat-widget\u001b[22m\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m\u001b[35m\u001b[0m \u001b[1mreact-chat-widget\u001b[22m@\"\u001b[1m^3.1.4\u001b[22m\" from the root project\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mERESOLVE\u001b[0m overriding peer dependency0m ROOT quickselect@1.1.1 OK\u001b[0m\u001b[Km\u001b[K\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m Unsupported engine {midealTree:node_modules/micromat\u001b[0m\u001b[Km\u001b[Kenc\u001b[0m\u001b[K\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m package: 'langchain@0.0.75',\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m required: { node: '>=18' },\n", + "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m Unsupported engine {ompleted in 1ms\u001b[0m\u001b[K[K\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m package: '@fortaine/fetch-event-source@3.0.6',\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m required: { node: '>=16.15' },\n", "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m current: { node: 'v16.13.0', npm: '8.1.0' }\n", "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m }\n", "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m Unsupported engine {\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m package: '@fortaine/fetch-event-source@3.0.6',\n", - "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m required: { node: '>=16.15' },\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m package: 'langchain@0.0.75',\n", + "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m required: { node: '>=18' },\n", "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m current: { node: 'v16.13.0', npm: '8.1.0' }\n", "\u001b[0m\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mEBADENGINE\u001b[0m }\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m urix@0.1.0: Please see https://github.com/lydell/urix#deprecated\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated[0m\u001b[K\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m @npmcli/move-file@2.0.1: This functionality has been moved to @npmcli/fsK\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies\n", - "\u001b[K\u001b[?25h\u001b[37;40mnpm\u001b[0m \u001b[0m\u001b[30;43mWARN\u001b[0m \u001b[0m\u001b[35mdeprecated\u001b[0m chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies\n", - "\u001b[K\u001b[?25hm##################\u001b[0m⸩ ⠸ reify:chart.js: \u001b[32;40mhttp\u001b[0m \u001b[35mfetch\u001b[0m GET 200 https://registry.npmj\u001b[0m\u001b[Ky.npmj\u001b[0m\u001b[Kdar\u001b[0m\u001b[K\n", - "added 485 packages, removed 180 packages, changed 209 packages, and audited 1436 packages in 2m\n", + "\u001b[K\u001b[?25hm##################\u001b[0m⸩ ⠴ reify:fsevents: \u001b[32;40mtiming\u001b[0m \u001b[35mreifyNode:node_modules/webpack-de\u001b[0m\u001b[Ks\u001b[0m\u001b[K0ms\u001b[0m\u001b[K\n", + "up to date, audited 1436 packages in 5s\n", "\n", "91 packages are looking for funding\n", " run `npm fund` for details\n", "\n", - "\u001b[31m\u001b[1m13\u001b[22m\u001b[39m vulnerabilities (1 \u001b[1mlow\u001b[22m, 3 \u001b[33m\u001b[1mmoderate\u001b[22m\u001b[39m, 9 \u001b[31m\u001b[1mhigh\u001b[22m\u001b[39m)\n", + "\u001b[31m\u001b[1m16\u001b[22m\u001b[39m vulnerabilities (1 \u001b[1mlow\u001b[22m, 6 \u001b[33m\u001b[1mmoderate\u001b[22m\u001b[39m, 9 \u001b[31m\u001b[1mhigh\u001b[22m\u001b[39m)\n", "\n", "To address issues that do not require attention, run:\n", " npm audit fix\n", @@ -220,64 +108,48 @@ "\u001b[1m10% building 1/1 modules 0 active\u001b[39m\u001b[22m\u001b[34mℹ\u001b[39m \u001b[90m｢wds｣\u001b[39m: Project is running at \u001b[1m\u001b[34mhttp://localhost:8080/\u001b[39m\u001b[22m\n", "\u001b[34mℹ\u001b[39m \u001b[90m｢wds｣\u001b[39m: webpack output is served from \u001b[1m\u001b[34m/\u001b[39m\u001b[22m\n", "\u001b[34mℹ\u001b[39m \u001b[90m｢wds｣\u001b[39m: Content not from webpack is served from \u001b[1m\u001b[34m/home/app/viz\u001b[39m\u001b[22m\n", - "\u001b[1m11% building 13/16 modules 3 active ...r/client/utils/getCurrentScriptSource.js\u001b[39m\u001b[22m\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: wait until bundle finished: /\n", - "\u001b[1m69% building 9250/9296 modules 46 active 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+ "\u001b[1m10% building 1/4 modules 3 active .../lib/index.js??ref--4!/home/app/viz/app.js\u001b[39m\u001b[22m\u001b[2K\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: wait until bundle finished: /\n", + "\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: Hash: 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"Version: webpack \u001b[1m4.47.0\u001b[39m\u001b[22m\n", - "Time: \u001b[1m111363\u001b[39m\u001b[22mms\n", - "Built at: 11/10/2023 \u001b[1m12:21:58 AM\u001b[39m\u001b[22m\n", + "Time: \u001b[1m142430\u001b[39m\u001b[22mms\n", + "Built at: 11/10/2023 \u001b[1m2:14:39 PM\u001b[39m\u001b[22m\n", " \u001b[1mAsset\u001b[39m\u001b[22m \u001b[1mSize\u001b[39m\u001b[22m \u001b[1mChunks\u001b[39m\u001b[22m \u001b[1m\u001b[39m\u001b[22m \u001b[1m\u001b[39m\u001b[22m\u001b[1mChunk Names\u001b[39m\u001b[22m\n", - " \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m 45.7 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted]\u001b[39m\u001b[22m app\n", - "\u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m 20.8 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [dev]\u001b[39m\u001b[22m app\n", + " \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m 45.6 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted]\u001b[39m\u001b[22m app\n", + "\u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m 20.7 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [dev]\u001b[39m\u001b[22m app\n", "Entrypoint \u001b[1mapp\u001b[39m\u001b[22m = \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m \u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m\n", "[0] \u001b[1mmulti (webpack)-dev-server/client?http://localhost:8080 (webpack)/hot/dev-server.js ./app.js\u001b[39m\u001b[22m 52 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", "[\u001b[1m./app.js\u001b[39m\u001b[22m] 44.1 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", "[\u001b[1m./module_casedata.js\u001b[39m\u001b[22m] 354 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", "[\u001b[1m./node_modules/@deck.gl/core/dist/esm/index.js\u001b[39m\u001b[22m] 3.49 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", "[\u001b[1m./node_modules/@deck.gl/extensions/dist/esm/index.js\u001b[39m\u001b[22m] 795 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", - "[\u001b[1m./node_modules/@deck.gl/layers/dist/esm/index.js\u001b[39m\u001b[22m] 1.14 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", "[\u001b[1m./node_modules/@deck.gl/react/dist/esm/index.js\u001b[39m\u001b[22m] 115 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", - "[\u001b[1m./node_modules/@flowmap.gl/layers/dist/index.js\u001b[39m\u001b[22m] 1.56 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", "[\u001b[1m./node_modules/@mui/icons-material/ArrowDropDown.js\u001b[39m\u001b[22m] 492 bytes {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", 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\u001b[1mf44406baf0346ed8ad10\u001b[39m\u001b[22m2m39m\u001b[22mp.js\u001b[39m\u001b[22m\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\u001b[2K\n", + "Version: webpack \u001b[1m4.47.0\u001b[39m\u001b[22m\n", + "Time: \u001b[1m14928\u001b[39m\u001b[22mms\n", + "Built at: 11/10/2023 \u001b[1m2:16:46 PM\u001b[39m\u001b[22m\n", + " \u001b[1mAsset\u001b[39m\u001b[22m \u001b[1mSize\u001b[39m\u001b[22m \u001b[1mChunks\u001b[39m\u001b[22m \u001b[1m\u001b[39m\u001b[22m \u001b[1m\u001b[39m\u001b[22m\u001b[1mChunk Names\u001b[39m\u001b[22m\n", + " \u001b[1m\u001b[32mapp.b687832adda5702a5eee.hot-update.js\u001b[39m\u001b[22m 58.3 KiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [immutable] [hmr]\u001b[39m\u001b[22m app\n", + "\u001b[1m\u001b[32mapp.b687832adda5702a5eee.hot-update.js.map\u001b[39m\u001b[22m 92.5 KiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [dev]\u001b[39m\u001b[22m app\n", + " \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m 45.6 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted]\u001b[39m\u001b[22m app\n", + " \u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m 20.7 MiB \u001b[1mapp\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [dev]\u001b[39m\u001b[22m app\n", + " \u001b[1m\u001b[32mb687832adda5702a5eee.hot-update.json\u001b[39m\u001b[22m 45 bytes \u001b[1m\u001b[39m\u001b[22m \u001b[1m\u001b[32m[emitted] [immutable] [hmr]\u001b[39m\u001b[22m \n", + "Entrypoint \u001b[1mapp\u001b[39m\u001b[22m = \u001b[1m\u001b[32mapp.js\u001b[39m\u001b[22m \u001b[1m\u001b[32mapp.b687832adda5702a5eee.hot-update.js\u001b[39m\u001b[22m \u001b[1m\u001b[32mapp.js.map\u001b[39m\u001b[22m \u001b[1m\u001b[32mapp.b687832adda5702a5eee.hot-update.js.map\u001b[39m\u001b[22m\n", + "[\u001b[1m./app.js\u001b[39m\u001b[22m] 44.1 KiB {\u001b[1m\u001b[33mapp\u001b[39m\u001b[22m}\u001b[1m\u001b[32m [built]\u001b[39m\u001b[22m\n", " + 12868 hidden modules\n", - "\n", - "\u001b[1m\u001b[31mERROR in ./node_modules/@flowmap.gl/layers/dist/FlowmapLayer.js 49:40\n", - "Module parse failed: Unexpected token (49:40)\n", - "You may need an appropriate loader to handle this file type, currently no loaders are configured to process this file. See https://webpack.js.org/concepts#loaders\n", - "| if (onHover) {\n", - "| this._getFlowmapLayerPickingInfo(info).then((info) => {\n", - "> if ((this.state?.lastHoverTime ?? 0) <= startTime) {\n", - "| this.setState({ pickingInfo: info });\n", - "| onHover(info, event);\n", - " @ ./node_modules/@flowmap.gl/layers/dist/index.js 9:0-57 9:0-57\n", - " @ ./app.js\u001b[39m\u001b[22m\n", - "\n", - "\u001b[1m\u001b[31mERROR in ./node_modules/@flowmap.gl/layers/dist/AnimatedFlowLinesLayer/AnimatedFlowLinesLayer.js 76:29\n", - "Module parse failed: Unexpected token (76:29)\n", - "You may need an appropriate loader to handle this file type, currently no loaders are configured to process this file. See https://webpack.js.org/concepts#loaders\n", - "| if (changeFlags.extensionsChanged) {\n", - "| const { gl } = this.context;\n", - "> this.state.model?.delete();\n", - "| this.state.model = this._getModel(gl);\n", - "| this.getAttributeManager().invalidateAll();\n", - " @ ./node_modules/@flowmap.gl/layers/dist/AnimatedFlowLinesLayer/index.js 6:0-62 7:15-37\n", - " @ ./node_modules/@flowmap.gl/layers/dist/index.js\n", - " @ ./app.js\u001b[39m\u001b[22m\n", - "\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: Failed to compile.\n" - ] - }, - { - "ename": "", - "evalue": "", - "output_type": "error", - "traceback": [ - "\u001b[1;31mThe Kernel crashed while executing code in the the current cell or a previous cell. Please review the code in the cell(s) to identify a possible cause of the failure. Click here for more info. View Jupyter log for further details." + "\u001b[34mℹ\u001b[39m \u001b[90m｢wdm｣\u001b[39m: Compiled successfully.\n", + "^C\n" ] } ], @@ -289,30 +161,21 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "I seem to be stuck... Let's try and capture some more debugging information really quick." + "I seem to be stuck... Let's try and capture some more debugging information really quick.\n", + "\n", + "# ChatGrid" ] }, { "cell_type": "code", - "execution_count": 40, + "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Requirement already satisfied: pip in /usr/local/lib/python3.11/site-packages (23.2.1)\n", - "Collecting pip\n", - " Obtaining dependency information for pip from https://files.pythonhosted.org/packages/47/6a/453160888fab7c6a432a6e25f8afe6256d0d9f2cbd25971021da6491d899/pip-23.3.1-py3-none-any.whl.metadata\n", - " Downloading pip-23.3.1-py3-none-any.whl.metadata (3.5 kB)\n", - "Downloading pip-23.3.1-py3-none-any.whl (2.1 MB)\n", - "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m2.1/2.1 MB\u001b[0m \u001b[31m9.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0ma \u001b[36m0:00:01\u001b[0m\n", - "\u001b[?25hInstalling collected packages: pip\n", - " Attempting uninstall: pip\n", - " Found existing installation: pip 23.2.1\n", - " Uninstalling pip-23.2.1:\n", - " Successfully uninstalled pip-23.2.1\n", - "Successfully installed pip-23.3.1\n", + "Requirement already satisfied: pip in /usr/local/lib/python3.11/site-packages (23.3.1)\n", "\u001b[33mWARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv\u001b[0m\u001b[33m\n", "\u001b[0mRequirement already satisfied: aiohttp==3.8.4 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 1)) (3.8.4)\n", "Requirement already satisfied: aiosignal==1.3.1 in /usr/local/lib/python3.11/site-packages (from -r requirements.txt (line 2)) (1.3.1)\n", @@ -399,16 +262,24 @@ "\u001b[33mPress CTRL+C to quit\u001b[0m\n", " * Restarting with stat\n", " * Debugger is active!\n", - " * Debugger PIN: 110-927-162\n", - "127.0.0.1 - - [09/Nov/2023 02:55:53] \"\u001b[33mGET / HTTP/1.1\u001b[0m\" 404 -\n", - "127.0.0.1 - - [09/Nov/2023 02:56:04] \"\u001b[33mGET / HTTP/1.1\u001b[0m\" 404 -\n", - "127.0.0.1 - - [09/Nov/2023 02:56:06] \"\u001b[33mGET / HTTP/1.1\u001b[0m\" 404 -\n", - "^C\n" + " * Debugger PIN: 103-781-530\n", + "127.0.0.1 - - [10/Nov/2023 04:03:42] \"\u001b[33mGET /?vscodeBrowserReqId=1699589022090 HTTP/1.1\u001b[0m\" 404 -\n" + ] + }, + { + "ename": "", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[1;31mThe Kernel crashed while executing code in the the current cell or a previous cell. Please review the code in the cell(s) to identify a possible cause of the failure. Click here for more info. View Jupyter log for further details." ] } ], "source": [ - "!cd ../../viz/backend && sudo python3 -m pip install --upgrade pip && sudo python3 -m pip install -r requirements.txt && PYTHONPATH=/usr/local/lib/python3.11/site-packages python3 server.py" + "!cd ../../viz/backend && \\\n", + " sudo python3 -m pip install --upgrade pip && \\\n", + " sudo python3 -m pip install -r requirements.txt && \\\n", + " PYTHONPATH=/usr/local/lib/python3.11/site-packages python3 server.py" ] }, { @@ -422,20 +293,9 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Traceback (most recent call last):\n", - " File \"/home/app/viz/backend/server.py\", line 2, in \n", - " from flask import Flask\n", - "ModuleNotFoundError: No module named 'flask'\n" - ] - } - ], + "outputs": [], "source": [ "!cd ../../viz/backend && python3 server.py" ] diff --git a/viz/app.js b/viz/app.js index c4786dfd..dc5c8597 100644 --- a/viz/app.js +++ b/viz/app.js @@ -4,7 +4,7 @@ import { StaticMap, Popup, Marker, _MapContext as MapContext, FullscreenControl, import { WebMercatorViewport } from '@deck.gl/core'; import DeckGL from '@deck.gl/react'; // import FlowMapLayer from '@flowmap.gl/core' -import { FlowmapLayer } from '@flowmap.gl/layers' +// import { FlowmapLayer } from '@flowmap.gl/layers' import { GeoJsonLayer, ColumnLayer, PolygonLayer } from '@deck.gl/layers'; import { DataFilterExtension } from '@deck.gl/extensions'; import Checkbox from '@mui/material/Checkbox'; @@ -739,23 +739,23 @@ export default function App({ refdata = data, refflowdata = flowdata, ggdata = g const layers = [ - new FlowmapLayer({ - id: 'my-flowmap-layer', - data: flowdata, - visible: flowlayeractive, - animationEnabled: true, //control the animation effect of flow layer - colorScheme: ["rgb(0,0,255)","rgb(255,0,255)"], - // darkMode: true, - // clusteringEnabled: false, //control the aggregate effect of flow layer - // adaptiveScalesEnabled: false, - getFlowMagnitude: (flow) => flow.count, - getFlowOriginId: (flow) => flow.origin, - getFlowDestId: (flow) => flow.dest, - getLocationId: (loc) => loc.id, - getLocationLat: (loc) => loc.lat, - getLocationLon: (loc) => loc.lon, - - }), + // new FlowmapLayer({ + // id: 'my-flowmap-layer', + // data: flowdata, + // visible: flowlayeractive, + // animationEnabled: true, //control the animation effect of flow layer + // colorScheme: ["rgb(0,0,255)","rgb(255,0,255)"], + // // darkMode: true, + // // clusteringEnabled: false, //control the aggregate effect of flow layer + // // adaptiveScalesEnabled: false, + // getFlowMagnitude: (flow) => flow.count, + // getFlowOriginId: (flow) => flow.origin, + // getFlowDestId: (flow) => flow.dest, + // getLocationId: (loc) => loc.id, + // getLocationLat: (loc) => loc.lat, + // getLocationLon: (loc) => loc.lon, + // + // }), new GeoJsonLayer({ id: 'geojson', From d6644a4b0f5d6854500f0ef19cd9e9108f3e820c Mon Sep 17 00:00:00 2001 From: Jaelyn Litzinger <93339979+jaelynlitz@users.noreply.github.com> Date: Fri, 10 Nov 2023 15:25:58 -0800 Subject: [PATCH 6/7] typo [skip-ci] --- docs/devcontainer/mpi4py-tutorial.ipynb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/devcontainer/mpi4py-tutorial.ipynb b/docs/devcontainer/mpi4py-tutorial.ipynb index 4d13039c..4ceaec4b 100644 --- a/docs/devcontainer/mpi4py-tutorial.ipynb +++ b/docs/devcontainer/mpi4py-tutorial.ipynb @@ -6,7 +6,7 @@ "source": [ "# ExaGO mpi4py Jupyter Tutorial\n", "\n", - "We have a Python wrapper for ExaGO installed in this container through sapck. You can view the Dockerfile in `.devcontainer/Dockerfile`. See the Appendix for more details.\n", + "We have a Python wrapper for ExaGO installed in this container through spack. You can view the Dockerfile in `.devcontainer/Dockerfile`. See the Appendix for more details.\n", "\n", "This is different to the base tutorial in that we include some additional information about MPI configuration." ] From 340463bba573d097a5db4b325b4614f787476eba Mon Sep 17 00:00:00 2001 From: Jaelyn Litzinger Date: Fri, 10 Nov 2023 15:38:19 -0800 Subject: [PATCH 7/7] added some notes from code review --- docs/devcontainer/viz-tutorial.ipynb | 17 ++++++++++++----- 1 file changed, 12 insertions(+), 5 deletions(-) diff --git a/docs/devcontainer/viz-tutorial.ipynb b/docs/devcontainer/viz-tutorial.ipynb index 1a32379d..18c3afd8 100644 --- a/docs/devcontainer/viz-tutorial.ipynb +++ b/docs/devcontainer/viz-tutorial.ipynb @@ -39,10 +39,11 @@ ] }, { + "attachments": {}, "cell_type": "markdown", "metadata": {}, "source": [ - "TODO: Going to let Shri fill the details in here, as likely we don't want people churning large data sets in a small demo, and we can include pre-generated data I would hope..." + "TODO: Going to let Shri fill the details in here, as likely we don't want people churning large data sets in a small demo, and we can include pre-generated data I would hope... include what gic is " ] }, { @@ -55,12 +56,13 @@ ] }, { + "attachments": {}, "cell_type": "markdown", "metadata": {}, "source": [ "# Visualization\n", "\n", - "Launch through shell commands or with the following shell command:" + "Launch the visualization webpage through shell commands or with the following shell command:" ] }, { @@ -518,9 +520,9 @@ ], "metadata": { "kernelspec": { - "display_name": "ExaGO w/ MPI", + "display_name": "Python 3", "language": "python", - "name": "py311-mpi4py-exago" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -532,7 +534,12 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.6" + "version": "3.11.6 (main, Nov 1 2023, 10:08:51) [GCC 12.2.0]" + }, + "vscode": { + "interpreter": { + "hash": "949777d72b0d2535278d3dc13498b2535136f6dfe0678499012e853ee9abcab1" + } } }, "nbformat": 4,