-
Notifications
You must be signed in to change notification settings - Fork 5
/
tax-treatment-NS0-v1.dtd
580 lines (429 loc) · 24.8 KB
/
tax-treatment-NS0-v1.dtd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
<!-- ============================================================= -->
<!-- =============================================================
This DTD is a modification of the orignal TaxPub DTD extension to the
NLM Journal Publishing DTD version 3.0 created in September 2008.
This is version 1.0.
This version was released on February 3, 2023.
Terry Catapano with the assitance of Jeff Beck, Donat Agosti, Lyubomir Penev, Bob
Morris, Scott Federhen, Laura Kelly.
-->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//TaxPub//DTD Taxonomic Treatment Publishing DTD v1.0 20230203//EN"
Delivered as file "tax-treatment.dtd" -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- MODULES OF MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
<!-- Names all DTD-specific external modules -->
<!--
<!ENTITY % journalpubcustom-modules.ent
PUBLIC
"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD-Specific Modules v1.3 20210610//EN"
"JATS-journalpubcustom-modules1-3.ent" >
%journalpubcustom-modules.ent;
-->
<!ENTITY % taxpubcustom-modules.ent
PUBLIC
"//TaxPub//DTD Taxonomic Treatment DTD-Specific Modules v1.0 20230203//EN"
"taxpubcustom-modules-NS0-v1.ent" >
%taxpubcustom-modules.ent;
<!-- MODULE TO NAME THE MATHML 3.0 MODULES -->
<!-- Names all DTD-specific external modules -->
<!ENTITY % mathml3-modules.ent
PUBLIC
"-//NLM//DTD JATS (Z39.96) JATS MathML 3.0 Modules v1.3 20210610//EN"
"JATS-mathml3-modules1-3.ent" >
%mathml3-modules.ent;
<!-- MODULE TO NAME THE MODULES -->
<!-- Declares all the external modules that are
part of the modular Journal Archiving and
Interchange DTD Suite library. Thus it does
NOT declare itself; the DTD-specific
module-of-modules; or the DTD-specific class,
mix, or model over-ride modules. Those are
declared in the DTD-specific module of modules.
Since this module declares but does not
invoke modules, this DTD invokes any modules
it uses by referencing the external
Parameter Entities defined in the Module of
Modules. To include a set of elements (such
as all the lists or the table elements) this
module defines the external Parameter Entity
for the module(s) that contains the table
declarations and the DTD references that
entity. -->
<!ENTITY % modules.ent PUBLIC
"-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.3 20210610//EN"
"JATS-modules1-3.ent" >
%modules.ent;
<!-- ============================================================= -->
<!-- NISO ALI NAMESPACE SETUP -->
<!-- ============================================================= -->
<!-- DEFINE ALI NAMESPACE ATTRIBUTE AND PREFIX -->
<!-- Names the module defines the NISO Access and
Indicators Exchange Model namespace, prefix,
and pseudo-attribute @xmlns. -->
%JATS-ali-namespace.ent;
<!-- ============================================================= -->
<!-- SET UP COMMON (ALL ELEMENT) ATTRIBUTES -->
<!-- ============================================================= -->
<!-- COMMON ATTRIBUTES MODULE -->
<!-- Set up the common attributes, those used on
nearly all elements.
Must be called before the custom models
module. -->
%JATS-common-atts.ent;
<!-- ============================================================= -->
<!-- CUSTOMIZATION MODULES INVOKED -->
<!-- Note: These modules must be called after -->
<!-- all Module of Modules but before any other -->
<!-- modules. Unlike any other grouping, order -->
<!-- of these modules matters. -->
<!-- ============================================================= -->
<!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the DTD-specific
class definitions for the Journal Publishing
DTD that will over-ride classes in the Suite.
(Defined in %journalpubcustom-modules.ent;)-->
<!-- %journalpubcustom-classes.ent; -->
%taxpubcustom-classes.ent;
<!-- DEFAULT ELEMENT CLASSES MODULE -->
<!-- Names the module that holds the standard
class definitions for the JATS DTD Suite. -->
%default-classes.ent;
<!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
<!-- Set up the Parameter Entities and element
class definitions that will be used to
over-ride some element mixes in this DTD.
(Defined in %journalpubcustom-modules.ent;)-->
<!-- %journalpubcustom-mixes.ent; -->
%taxpubcustom-mixes.ent;
<!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the standard
mix definitions for the JATS DTD Suite. -->
%default-mixes.ent;
<!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
MODULE -->
<!-- Names the module that holds the over-rides
of content models, attribute lists, elements
lists to be used in content models, and
attribute values. These are DTD-specific.
(Defined in %journalpubcustom-modules.ent;)-->
<!-- %journalpubcustom-models.ent; -->
%taxpubcustom-models.ent;
<!-- ============================================================= -->
<!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
<!-- ============================================================= -->
<!-- COMMON (SHARED) DECLARATIONS -->
<!-- Declarations for elements, attributes,
entities, and Notations that are shared by
more than one class module. Note: Must be
called before any of the class modules. -->
%common.ent;
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
<!-- ============================================================= -->
<!-- TAXONOMIC TREATMENT ELEMENTS -->
%taxpubcustom-elements.ent;
<!-- ARTICLE METADATA ELEMENTS -->
%articlemeta.ent;
<!-- BACK MATTER ELEMENTS -->
%backmatter.ent;
<!-- DISPLAY (GRAPHICAL) ELEMENTS -->
%display.ent;
<!-- FORMATTING ELEMENT CLASSES -->
<!-- Elements that change rendition/display. -->
%format.ent;
<!-- FUNDING ELEMENTS -->
<!-- Elements that describe the sponsorship or
open access -->
%funding.ent;
<!-- JOURNAL METADATA ELEMENTS -->
%journalmeta.ent;
<!-- LINK CLASS ELEMENTS -->
%link.ent;
<!-- LIST CLASS ELEMENTS -->
%list.ent;
<!-- MATH ELEMENTS -->
%math.ent;
<!-- NLM CITATION ELEMENT -->
%nlmcitation.ent;
<!-- PARAGRAPH-LEVEL ELEMENTS -->
%para.ent;
<!-- PHRASE-LEVEL ELEMENTS -->
%phrase.ent;
<!-- BIBLIOGRAPHIC REFERENCE (CITATION)
CLASS ELEMENTS -->
%references.ent;
<!-- RELATED OBJECT ELEMENT -->
<!-- Defines the <related-object> element to
describe a related object such as a
related book or a dataset. -->
%related-object.ent;
<!-- SECTION ELEMENTS -->
%section.ent;
<!-- ============================================================= -->
<!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
<!-- ============================================================= -->
<!-- BITS EMBEDDED INDEX ELEMENTS MODULE -->
<!-- Element declarations the index elements
which are embedded in the article
narrative. -->
%index-term.ent;
<!-- BITS QUESTION AND ANSWER MODULE -->
<!-- Element declarations for BITS questions
and answers (not complete tests, but used
to put build quizzes and tests. -->
%question-answer.ent;
<!-- ============================================================= -->
<!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MATHML SETUP MODULE -->
<!-- Invoke the MathML modules -->
%mathml3-mathmlsetup.ent;
<!-- XHTML TABLE SETUP MODULE -->
<!-- Set up the necessary Parameter Entity values
and then invoke XHTML (HTML 4.0) table
module -->
%XHTMLtablesetup.ent;
<!-- SPECIAL CHARACTERS DECLARATIONS -->
<!-- Standard XML special character entities
used in this DTD -->
%xmlspecchars.ent;
<!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
<!-- Custom special character entities created
specifically for use in this DTD Suite -->
%chars.ent;
<!-- NOTATION DECLARATIONS MODULE -->
%notat.ent;
<!-- ============================================================= -->
<!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
<!-- ============================================================= -->
<!-- DTD VERSION -->
<!-- What version of this DTD was used to make
the document instance under consideration. -->
<!ENTITY % dtd-version
"dtd-version
(3.0 | 0.4 | 1.0 | 1.1d1 | 1.1d2 | 1.1d3 |
1.1 | 1.2d1 | 1.2d2 | 1.2 | 1.3d1 | 1.3d2 |
1.3)
#IMPLIED" >
<!-- ARTICLE ATTRIBUTES -->
<!-- Attributes for the top-level element
<article> -->
<!ENTITY % article-atts
"%jats-common-atts;
article-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
%dtd-version;
xml:lang NMTOKEN 'en'
%XLINK.xmlns.attrib;
%MATHML.xmlns.attrib;
%ali.xmlns.attrib;
%Schema.xmlns.attrib;
%taxpub-namespace-att;
%Schema.prefix;:noNamespaceSchemaLocation
CDATA #IMPLIED"
>
<!-- BACK ATTRIBUTES -->
<!-- Attributes for the <back> element -->
<!ENTITY % back-atts
"%jats-common-atts;" >
<!-- BODY ATTRIBUTES -->
<!-- Attributes for the <body> element -->
<!ENTITY % body-atts
"%jats-common-atts;
specific-use
CDATA #IMPLIED" >
<!-- FRONT ATTRIBUTES -->
<!-- Attributes for the <front> element -->
<!ENTITY % front-atts
"%jats-common-atts;" >
<!-- FRONT STUB ATTRIBUTES -->
<!-- Attributes for the <front-stub> element -->
<!ENTITY % front-stub-atts
"%jats-common-atts;" >
<!-- SUB-ARTICLE ATTRIBUTES -->
<!-- Attributes for the <sub-article> element -->
<!ENTITY % sub-article-atts
"%jats-common-atts;
article-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN #IMPLIED" >
<!-- RESPONSE ATTRIBUTES -->
<!-- Attributes for the <response> element -->
<!ENTITY % response-atts
"%jats-common-atts;
response-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN #IMPLIED" >
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE ELEMENTS -->
<!-- ============================================================= -->
<!-- ARTICLE MODEL (LIMITED) -->
<!-- Article-like model used for, for example,
a short sub-article such as a news brief that
is contained in side a journal article.
-->
<!ENTITY % article-short-model
"(processing-meta?, (front | front-stub),
body?, back?, floats-group?)" >
<!-- ARTICLE MODEL WITH SUB-ARTICLE OR RESPONSE -->
<!-- Typical journal article model, which may
contain extended components, such as
sub-articles or responses, but which usually
contains neither.
-->
<!ENTITY % article-full-model
"(processing-meta?, front,
body?, back?, floats-group?,
(sub-article* | response*) )" >
<!-- ARTICLE -->
<!-- The complete content of a journal article.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=article
-->
<!ELEMENT article %article-full-model; >
<!ATTLIST article
%article-atts; >
<!-- ============================================================= -->
<!-- FRONT MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- FRONT MATTER MODEL -->
<!-- Model for the <front> matter (the header
metadata) of a journal article) -->
<!ENTITY % front-model "(journal-meta, article-meta,
(%front-back.class;)? )" >
<!-- FRONT MATTER -->
<!-- The metadata concerning an article, such as
the name and issue of the journal in which it
appears and the name and author(s) of the
article.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=front
-->
<!ELEMENT front %front-model; >
<!ATTLIST front
%front-atts; >
<!-- ============================================================= -->
<!-- BODY ELEMENTS -->
<!-- ============================================================= -->
<!-- BODY MODEL -->
<!-- Content model for the Body (main textual
content) of a journal article. -->
<!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
sig-block?)" >
<!-- BODY OF THE ARTICLE -->
<!-- The main textual portion of the article that
conveys the content.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=body
-->
<!ELEMENT body %body-model; >
<!ATTLIST body
%body-atts; >
<!-- ============================================================= -->
<!-- BACK MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- BACK MATTER MODEL -->
<!-- Content model for the Back Matter (ancillary
material such as appendices) of a journal
article. -->
<!ENTITY % back-model "(label?, title*, (%doc-back-matter-mix;)* )">
<!-- BACK MATTER -->
<!-- Ancillary or supporting material not included
as part of the main textual content of a
journal article, for example appendices and
acknowledgments.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=back
-->
<!ELEMENT back %back-model; >
<!ATTLIST back
%back-atts; >
<!-- ============================================================= -->
<!-- SUB-ARTICLE -->
<!-- ============================================================= -->
<!-- SUB-ARTICLE MODEL -->
<!-- Content model for the <sub-article> element
-->
<!ENTITY % sub-article-model
"(processing-meta?, (front | front-stub),
body?, back?, floats-group?,
(sub-article* | response*) )" >
<!-- SUB-ARTICLE -->
<!-- An article that is completely contained
inside another article. Both the article and
the sub-article have their own metadata.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=sub-article
-->
<!ELEMENT sub-article %sub-article-model; >
<!ATTLIST sub-article
%sub-article-atts; >
<!-- FRONT MODEL STUB -->
<!-- Content model for the <front-stub> element,
a reduced metadata set for use in
sub-articles and responses -->
<!ENTITY % front-stub-model
"(article-id*, (%article-version.class;)?,
article-categories?,
title-group?,
( %contrib-group.class; |
%aff-alternatives.class;)*,
author-notes?, ( (%pub-date.class;)* |
pub-date-not-available?),
volume*, volume-id*, volume-series?,
issue*, issue-id*,
issue-title*, issue-title-group*,
issue-sponsor*, issue-part?,
volume-issue-group*, isbn*,
supplement?,
( (fpage, lpage?, page-range?) |
elocation-id)?,
( %address-link.class; | product |
supplementary-material)*,
history?, pub-history?, permissions?,
self-uri*, (%related-article.class;)*,
(%abstract.class;)*, trans-abstract*,
(%kwd-group.class;)*,
funding-group*, support-group*,
conference*, counts?,
custom-meta-group?)" >
<!-- STUB FRONT METADATA -->
<!-- A reduced metadata set for use in
sub-articles and responses, which will
inherit metadata not defined in the stub
from the enclosing article
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=front-stub
-->
<!ELEMENT front-stub %front-stub-model; >
<!ATTLIST front-stub
%front-stub-atts; >
<!-- ============================================================= -->
<!-- RESPONSE ELEMENTS -->
<!-- ============================================================= -->
<!-- RESPONSE -->
<!-- Reply, response, or commentary concerning the
journal article. In the typical case, the
response is included in the same XML package
as the original article, and thus attached
at the end of the article proper.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.3/index.html?elem=response
-->
<!ELEMENT response %article-short-model; >
<!ATTLIST response
%response-atts; >
<!-- ================== End Journal Publishing DTD =============== -->