From 5df906ca9e55c2e3a11d185aa9219bc7e27d0e9a Mon Sep 17 00:00:00 2001 From: Manuel Tognon <51021763+ManuelTgn@users.noreply.github.com> Date: Mon, 14 Oct 2024 17:25:17 +0200 Subject: [PATCH] Update crisprme_auto_test_conda.sh --- crisprme_auto_test_conda.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/crisprme_auto_test_conda.sh b/crisprme_auto_test_conda.sh index f2f64c0..cf5b8a1 100755 --- a/crisprme_auto_test_conda.sh +++ b/crisprme_auto_test_conda.sh @@ -56,7 +56,7 @@ echo "Downloading ENCODE+GENCODE annotation data..." original_md5sum="$(curl -sL https://www.dropbox.com/s/1n2f0qxdba7u3gb/encode%2Bgencode.hg38.bed.zip?dl=0 | md5sum | cut -d ' ' -f 1)" encodegencode="encode+gencode.hg38.bed.zip" while true; do # retry download if caught timeout - wget -T 15 -c -O $encodegencode https://www.dropbox.com/s/1n2f0qxdba7u3gb/encode%2Bgencode.hg38.bed.zip?dl=0 && break + wget -T 15 -c -O $encodegencode https://www.dropbox.com/s/1n2f0qxdba7u3gb/encode%2Bgencode.hg38.bed.zip?dl=1 && break done local_md5sum="$(md5sum $encodegencode | cut -d ' ' -f 1)" if [ "$original_md5sum" != "$local_md5sum" ]; then @@ -69,7 +69,7 @@ echo "Downloading GENCODE encoding sequences..." original_md5sum="$(curl -sL https://www.dropbox.com/s/isqpkg113cr1xea/gencode.protein_coding.bed.zip?dl=0 | md5sum | cut -d ' ' -f 1)" gencode="gencode.protein_coding.bed.zip" while true; do # retry download if caught timeout - wget -T 15 -c -O $gencode https://www.dropbox.com/s/isqpkg113cr1xea/gencode.protein_coding.bed.zip?dl=0 && break + wget -T 15 -c -O $gencode https://www.dropbox.com/s/isqpkg113cr1xea/gencode.protein_coding.bed.zip?dl=1 && break done local_md5sum="$(md5sum $gencode | cut -d ' ' -f 1)" if [ "$original_md5sum" != "$local_md5sum" ]; then