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Seeming problems with generated ontology file #83

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Trevoke opened this issue Nov 5, 2024 · 0 comments
Open

Seeming problems with generated ontology file #83

Trevoke opened this issue Nov 5, 2024 · 0 comments

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@Trevoke
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Trevoke commented Nov 5, 2024

Hello! Thanks again for this project, it's allowing me to explore my ability to reason about these things and try to define concepts so much better.

I've found a problem with the generated ontology as I try to iterate.

Before the generated code, here's hopefully all the possibly relevant clojure code:

;;; project.clj
(defproject pizza "0.0.1-SNAPSHOT"
  :description "An ontology for pizza"
  :dependencies [[uk.org.russet/tawny-owl "2.3.3"]]
  :main pizza.core

  :profiles
  {:light {:plugins [[nightlight/lein-nightlight "2.4.4"]]}}
  )

;;; src/pizza/core.clj
(ns pizza.core
  [:use [tawny.owl]]
  [:require [pizza.pizza]])


(defn -main [& args]
  (tawny.owl/save-ontology pizza.pizza/pizza "pizza.omn"))

;;; src/pizza/pizza.clj
(ns pizza.pizza
  (:require [tawny.owl :refer :all]
            [tawny.reasoner :as r]))


(defontology pizza
  :iri "http://mo.com/pizza")
;; And there's classes and stuff below but only things from the Take Wing tutorial

And I had issues loading the generated .omn file in Protege 5.6.4. Here's how I get around it when I generate a file:

## This file was created by Tawny-OWL
## It should not be edited by hand
Prefix: http://www.w3.org/2002/07/owl#: <http://www.purl.org/ontolink/tawny#>
Prefix: owl: <http://www.w3.org/2002/07/owl#>
Prefix: pizza: <http://mo.com/pizza#>
Prefix: rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
Prefix: rdfs: <http://www.w3.org/2000/01/rdf-schema#>
Prefix: xml: <http://www.w3.org/XML/1998/namespace>
Prefix: xsd: <http://www.w3.org/2001/XMLSchema#>
Prefix: : <http://mo.com/pizza>

Ontology: <http://mo.com/pizza>

Import: <http://www.purl.org/ontolink/tawny>

This chunk gave us some trouble. We had to do a few changes:

Fix 1

Remove

Prefix: http://www.w3.org/2002/07/owl#: <http://www.purl.org/ontolink/tawny#>

And replace in file
http://www.w3.org/2002/07/owl# with owl (except for prefix definition)

Fix 2

Remove

Import: <http://www.purl.org/ontolink/tawny>

Link seems dead.

Hopefully it's just something I'm doing wrong, but maybe there's something on your end?

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