From 25f9274f8ef2d1b7adc78f324cf249fb74ddb731 Mon Sep 17 00:00:00 2001
From: david <david.holmberg@farmbio.uu.se>
Date: Mon, 30 Sep 2024 16:07:56 +0200
Subject: [PATCH] temp push

---
 .inputrc              | 11 +++++++++++
 build-local-docker.sh | 10 +++++-----
 docker/env.Dockerfile | 24 +++---------------------
 3 files changed, 19 insertions(+), 26 deletions(-)

diff --git a/.inputrc b/.inputrc
index 4d1b156..42837ce 100644
--- a/.inputrc
+++ b/.inputrc
@@ -86,3 +86,14 @@ set enable-bracketed-paste
 set enable-bracketed-paste
 set enable-bracketed-paste
 set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
+set enable-bracketed-paste
diff --git a/build-local-docker.sh b/build-local-docker.sh
index f3266ad..5f5d111 100755
--- a/build-local-docker.sh
+++ b/build-local-docker.sh
@@ -11,11 +11,11 @@ echo "tag=$tag"
 echo "image=$image"
 #switch to buildx build
 # Build docker image for this container.
-docker buildx build --no-cache -t ghcr.io/pharmbio/$image:$tag-devel \
-             --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-jupyter \
-             --build-arg FRAMEWORK=cpu \
-             -f ./docker/env.Dockerfile . || exit 1
-docker buildx build --no-cache -t ghcr.io/pharmbio/$image:${tag}-gpu-devel \
+# docker buildx build --no-cache -t ghcr.io/pharmbio/$image:$tag \
+#              --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-jupyter \
+#              --build-arg FRAMEWORK=cpu \
+#              -f ./docker/env.Dockerfile . || exit 1
+docker buildx build --no-cache -t ghcr.io/pharmbio/$image:${tag}-gpu \
              --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-gpu-jupyter \
              --build-arg FRAMEWORK=cuda \
              -f docker/env.Dockerfile . || exit 1
diff --git a/docker/env.Dockerfile b/docker/env.Dockerfile
index e07e38f..8834b08 100644
--- a/docker/env.Dockerfile
+++ b/docker/env.Dockerfile
@@ -67,15 +67,6 @@ RUN <<EOF
                         torch==2.2.1 \
                         torchvision \
                         torchaudio;
-                python3 -m pip install --no-cache-dir \ 
-                        pytorch_toolbelt;
-                # python3 -m pip install --no-cache-dir -f https://data.pyg.org/whl/torch-2.2.0+cu121.html \
-                #         pyg-lib \
-                #         torch-scatter \
-                #         torch-sparse \
-                #         torch-cluster \
-                #         torch-spline-conv \
-                #         torch-geometric;
                 python3 -m pip install \
                         --extra-index-url=https://pypi.nvidia.com \
                         cudf-cu12==24.6.* dask-cudf-cu12==24.6.* cuml-cu12==24.6.* \
@@ -88,15 +79,6 @@ RUN <<EOF
                         torch==2.2.1 \
                         torchvision \
                         torchaudio;
-                python3 -m pip install --no-cache-dir 
-                        pytorch_toolbelt ;
-                # python3 -m pip install --no-cache-dir -f https://data.pyg.org/whl/torch-2.2.0+cpu.html \
-                #         pyg-lib \
-                #         torch-scatter \
-                #         torch-sparse \
-                #         torch-cluster \
-                #         torch-spline-conv \
-                #         torch-geometric; 
         else 
         echo "Error: unknown hardware" 
         exit 1 
@@ -109,9 +91,9 @@ EOF
 
 
 # Add pharmbio templates, examples and misc
-WORKDIR /pharmbio/
-COPY README.md .
-COPY notebooks/* ./notebooks/
+#WORKDIR /pharmbio/
+#COPY README.md .
+#COPY notebooks/* ./notebooks/
 
 # Custom bashrc
 COPY bash.bashrc /etc/bash.bashrc