From ac67be5ba590b75cd5474e960585e15a40ad7837 Mon Sep 17 00:00:00 2001 From: Ian Taylor Date: Tue, 26 Nov 2024 16:38:32 -0800 Subject: [PATCH] add midwater vs bottom trawl age comps --- docs/data_summary_doc.qmd | 31 ++++++++++++++++-- .../pacfin-midwater-vs-bottom-figs-1.png | Bin 0 -> 25778 bytes .../pacfin-midwater-vs-bottom-figs-2.png | Bin 0 -> 19180 bytes docs/index.html | 10 ++++-- 4 files changed, 36 insertions(+), 5 deletions(-) create mode 100644 docs/data_summary_doc_files/figure-html/pacfin-midwater-vs-bottom-figs-1.png create mode 100644 docs/data_summary_doc_files/figure-html/pacfin-midwater-vs-bottom-figs-2.png diff --git a/docs/data_summary_doc.qmd b/docs/data_summary_doc.qmd index 553c5e5..5a6be53 100644 --- a/docs/data_summary_doc.qmd +++ b/docs/data_summary_doc.qmd @@ -219,8 +219,11 @@ Note that California lengths are not yet available for 2023. While running `PacFIN.Utilities::cleanPacFIN()`, it noted that 20 Washington ages in 1991 were double read, the second reader was not recorded, the first and second ages differed, and no final age was determined. -#### Comparing midwater vs bottom trawl lengths -```{r pacfin-midwater-vs-bottom-fig} +#### Comparing midwater vs bottom trawl lengths and ages + +The length and age distribution associated with the midwater trawl (MDT) code in PacFIN is is very similar to bottom trawl catch (everything else in the TWL gear group). Note that the sample sizes for ages in 2022-2024 are lower than other years, especially midwater in 2022 which only has 14 ages. + +```{r pacfin-midwater-vs-bottom-figs} # create separate geargroup2 column which separates midwater from bottom trawl # see note at # https://github.com/pfmc-assessments/PacFIN.Utilities/issues/69#issuecomment-2499162809 @@ -246,6 +249,30 @@ bds_clean |> breaks = c("MDT", "TWL"), labels = c("Midwater trawl", "Bottom trawl") ) + +# age comps from midwater vs bottom trawl +bds_clean |> + filter(geargroup == "TWL", !is.na(Age),SAMPLE_YEAR >= 2011) |> + ggplot(aes( + x = Age, + y = forcats::fct_rev(as.factor(SAMPLE_YEAR)), + color = as.factor(geargroup2) + )) + + ggridges::geom_density_ridges( + alpha = 0.2, + stat = "binline", + binwidth = 1 + ) + + labs( + x = "Age", + y = "Year", + ) + + scale_color_discrete( + name = "Gear", + breaks = c("MDT", "TWL"), + labels = c("Midwater trawl", "Bottom trawl") + ) + ``` diff --git 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Commercial

Note that California lengths are not yet available for 2023.

While running PacFIN.Utilities::cleanPacFIN(), it noted that 20 Washington ages in 1991 were double read, the second reader was not recorded, the first and second ages differed, and no final age was determined.

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Comparing midwater vs bottom trawl lengths

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Comparing midwater vs bottom trawl lengths and ages

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The length and age distribution associated with the midwater trawl (MDT) code in PacFIN is is very similar to bottom trawl catch (everything else in the TWL gear group). Note that the sample sizes for ages in 2022-2024 are lower than other years, especially midwater in 2022 which only has 14 ages.

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