diff --git a/index.html b/index.html index 3a8ca425..d3894320 100644 --- a/index.html +++ b/index.html @@ -1,9 +1,9 @@ - + -

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\ No newline at end of file diff --git a/v2.6.0/_sources/api.rst.txt b/v2.6.0/_sources/api.rst.txt new file mode 100644 index 00000000..419de938 --- /dev/null +++ b/v2.6.0/_sources/api.rst.txt @@ -0,0 +1,51 @@ +Happi API +********* + +Client +^^^^^^ + +.. autoclass:: happi.Client + :members: + + +.. autoclass:: happi.SearchResult + :members: + + +Backends +^^^^^^^^ + +.. autoclass:: happi.backends.core._Backend + :members: + +.. autosummary:: + :toctree: generated + + happi.backends.mongo_db.MongoBackend + happi.backends.json_db.JSONBackend + happi.backends.qs_db.QSBackend + + +Containers +^^^^^^^^^^^ + +Built-ins ++++++++++ + +.. autoclass:: happi.HappiItem + :members: + +.. autoclass:: happi.OphydItem + :members: + +Loading ++++++++ + +.. autofunction:: happi.from_container + +.. autofunction:: happi.load_devices + +Registry +++++++++ + +.. autoclass:: happi.containers.HappiRegistry diff --git a/v2.6.0/_sources/cli.rst.txt b/v2.6.0/_sources/cli.rst.txt new file mode 100644 index 00000000..4d1e053b --- /dev/null +++ b/v2.6.0/_sources/cli.rst.txt @@ -0,0 +1,7 @@ +=================================== +Command Line Interface +=================================== + +.. click:: happi.cli:happi_cli + :prog: happi + :nested: full diff --git a/v2.6.0/_sources/client.rst.txt b/v2.6.0/_sources/client.rst.txt new file mode 100644 index 00000000..c199b9bb --- /dev/null +++ b/v2.6.0/_sources/client.rst.txt @@ -0,0 +1,272 @@ +.. _client_label: + +Using the Client +**************** +Users will interact with the database by using the :class:`happi.Client`, this +will handle the authentication, and methods for adding, editing and removing +items. + +Happi is incredibly flexible, allowing us to put arbitrary key-value pair +information into the database. While this will make adding functionality easy in +the future, it also means that any rules on the structure of the data we allow +will need to be performed by the :class:`.Client` itself. To make this +intuitive, the Client deals primarily with :ref:`containers`, which are objects +that hold and specify these rules. + +.. _entry_code: + +Creating a New Entry +^^^^^^^^^^^^^^^^^^^^ +A new item must be a subclass of the basic :class:`.HappiItem` container. +While you are free to use the initialized object wherever you see fit, the client +has a hook to create new items. + +Before we can create our first client, we need to create a backend for our item +information to be stored. + +.. ipython:: python + :suppress: + + rm -f doc_test.json + +.. ipython:: python + + from happi.backends.json_db import JSONBackend + + db = JSONBackend(path='doc_test.json', initialize=True) + +If you are connecting to an existing database you can pass the information +directly into the :class:`.Client` itself at ``__init__``. See :ref:`db_choice` +about how to configure your default backend choice. + +.. ipython:: python + + from happi import Client, HappiItem + + client = Client(path='doc_test.json') + + item = client.create_item( + "HappiItem", + name="my_device", + device_class="types.SimpleNamespace", + args=[], + kwargs={}, + position=345.5, # <- this is an extra field which happi allows + ) + + item + + item.save() + +For this example, we have added an "extraneous" field to the item called +"position". This is something that happi allows for. If you wish to make +this a recognized field of an eforced type (e.g., don't allow the user to +make position a string value instead of a floating point value), please +see the documentation on making your own container class. + +Alternatively, you can create the item separately and add it explicitly using +:meth:`.HappiItem.save` + +.. ipython:: python + + item = HappiItem( + name="my_device2", + device_class="types.SimpleNamespace", + position=355.5, # <- this is an extra field which happi allows + ) + + item + + client.add_item(item) + +The main advantage of the first method is that all of the container classes are +already managed by the client so they can be easily accessed with a string. +Keep in mind, that either way, all of the mandatory information needs to be +given to the item before it can be loaded into the database. + +Searching the Database +^^^^^^^^^^^^^^^^^^^^^^ +There are several ways to load information from the database +:meth:`.Client.find_item`, :meth:`.Client.search`, and dictionary-like access. + +:meth:`.Client.find_item` is intended to only load one item at at a time. Both +accept criteria in the from of keyword-value pairs to find the item or items +you desire. + +You can quickly query the client by item name and get a ``SearchResult`` that +can be used to introspect metadata or even instantiate the corresponding item +instance. + +.. ipython:: python + + result = client["my_device"] + +The client acts as a Python mapping, so you may inspect it as you would a +dictionary. For example: + +.. ipython:: python + + # All of the item names: + list(client.keys()) + # All of the database entries as SearchResults: + list(client.values()) + # Pairs of (name, SearchResult): + list(client.items()) + + +You could, for example, grab the first key by name and access it using +``__getitem__``: + +.. ipython:: python + + key_0 = list(client)[0] + key_0 + client[key_0] + +Or see how many entries are in the database: + +.. ipython:: python + + len(client) + +Here's a search that gets all the items of type generic ``HappiItem``: + +.. ipython:: python + + results = client.search(type="HappiItem") + + +Working with the SearchResult +""""""""""""""""""""""""""""" + +Representing a single search result from ``Client.search`` and its variants, a +:class:`SearchResult` can be used in multiple ways. + +This result can be keyed for metadata as in: + +.. ipython:: python + + result = results[0] + result['name'] + + +The :class:`HappiItem` can be readily retrieved: + + +.. ipython:: python + + result.item + type(result.item) + + +Or the object may be instantiated: + +.. ipython:: python + + result.get() + + +See that :meth:`.SearchResult.get` returns the class we expect, based on the +`device_class`. + +.. ipython:: python + + result['device_class'] + type(result.get()) + +There are also some more advance methods to search specific areas of the +beamline or use programmer-friendly regular expressions, described in the +upcoming sections. + + +Searching for items on a beamline +""""""""""""""""""""""""""""""""" + +To search for items on a beamline such as 'MFX', one would use the following: + + +.. ipython:: python + + client.search(type='HappiItem', beamline='MFX') + + +Searching a range +""""""""""""""""" + +In this example, we have added an extraneous field ``position`` that is not +present normally in the ``HappiItem`` container. + +We can search a range of values with any arbitrary key using +:meth:`.Client.search_range`. For example: + +.. ipython:: python + + client.search_range("position", start=314.4, end=348.6) + +This would return all items between positions 314.4 and 348.6. + +Any numeric key can be filtered in the same way, replacing ``'position'`` with +the key name. + +Searching with regular expressions +"""""""""""""""""""""""""""""""""" + +Any key can use a regular expression for searching by using :meth:`.Client.search_regex` + +.. ipython:: python + + client.search_regex(name='my_device[2345]') + + +Editing Item Information +^^^^^^^^^^^^^^^^^^^^^^^^ +The workflow for editing an item looks very similar to the code within +:ref:`entry_code`, but instead of instantiating the item you use either +:meth:`.Client.find_item` or :meth:`.Client.search`. When the item is retrieved +this way the class method :meth:`.HappiItem.save` is overwritten, simply call +this when you are done editing. + +.. ipython:: python + + my_motor = client.find_item(name="my_device") + + my_motor.position = 425.4 + + my_motor.save() + +.. note:: + + Because the database uses the ``name`` key as an item's identification you + can not edit this information in the same way. Instead you must explicitly + remove the item and then use :meth:`.Client.add_item` to create a new + entry. + +Finally, lets clean up our example objects by using +:meth:`.Client.remove_item` to clean them from the database + +.. ipython:: python + + item_1 = client.find_item(name='my_device') + + item_2 = client.find_item(name='my_device2') + + for item in (item_1, item_2): + client.remove_item(item) + +.. _db_choice: + +Selecting a Backend +^^^^^^^^^^^^^^^^^^^ +Happi supports both JSON and MongoDB backends. You can always import your +chosen backend directly, but in order to save time you can create an +environment variable ``HAPPI_BACKEND`` and set this to ``"mongodb"``. This well +tell the library to assume you want to use the :class:`.MongoBackend`. +Otherwise, the library uses the :class:`.JSONBackend`. + +.. + Remove test file created by initializing a JSONBackend above + +.. ipython:: python + :suppress: + + rm -f doc_test.json diff --git a/v2.6.0/_sources/containers.rst.txt b/v2.6.0/_sources/containers.rst.txt new file mode 100644 index 00000000..8bc2885d --- /dev/null +++ b/v2.6.0/_sources/containers.rst.txt @@ -0,0 +1,312 @@ +.. _containers: + +Containers +********** + +In order to regulate and template the information that gets entered into the +Happi database, we use the concept of containers. Containers serve two primary +roles: + +* Identifying how to instantiate the object it represents (by way of class + name, arguments, and keyword arguments). +* Storing pertinent and structured metadata for the given instance. + +Containers are created by instantiating the :class:`.HappiItem` class or a +subclass of it. The metadata associated with the instance is broken up into +fields or "entries" of type :class:`.EntryInfo`. This allows a developer to +specify fields that are essential to every instance of a specific container +type. + +EntryInfo +^^^^^^^^^ + +These fields are specified using an instance of :class:`.EntryInfo`. This class +provides several primary features: + +* Mark a field as required (or optional) +* Add default values when unspecified +* Enforce - or validate - a certain format for the field + +.. autoclass:: happi.EntryInfo + :members: + +HappiItem +^^^^^^^^^ + +In order to ensure that information is entered into the database in an +organized fashion, the client will only accept classes that inherit from +:class:`.HappiItem`. Each item will have the key information represented as +class attributes, available to be manipulated like any other regular property + +Editing the information for a container is a simple as: + +.. ipython:: python + + from happi import HappiItem + + item = HappiItem(name='my_device') + + item.name = 'new_name' + + +.. note:: + + :class:`happi.Device` class is **deprecated** due to ambiguous name, + conflicting with :class:`ophyd.Device`. + :class:`happi.HappiItem` should be used instead. + + +Example Container +^^^^^^^^^^^^^^^^^ + +In order to show the flexibility of the :class:`.EntryInfo` class, we'll put +together a new example container. The class can be invoked in the same way you +would usually handle class inheritance, the only difference is that you specify +class attributes as EntryInfo objects: + +.. ipython:: python + + import re + from happi import HappiItem, EntryInfo + + class MyItem(HappiItem): + """My new item, with a known model number.""" + model_no = EntryInfo('Model Number of Item', optional=False) + count = EntryInfo('Count of Item', enforce=int, default=0) + choices = EntryInfo('Choice Info', enforce=['a','b','c']) + no_whitespace = EntryInfo('Enforce no whitespace', + enforce = re.compile(r'[\S]*$'), + enforce_doc = 'This item cannot have whitespace') + +By default, :class:`.EntryInfo` will create an optional init keyword argument with a +default of ``None`` with the same name as the class attribute. A quick way +to see how this information will be put into the the database is taking a look +at ``dict(item)``: + +.. ipython:: python + + item = MyItem(name="my_item", model_no="QABC1234") + dict(item) + +As shown in the example above, using the EntryInfo keywords, you can put a +short docstring to give a better explanation of the field, and also enforce +that user enter a specific format of information. + +While the user will always be able to enter ``None`` for the attribute, if a +real value is given it will be checked against the specified ``enforce`` +keyword, raising ``ValueError`` if invalid. Here is a table for how the +:class:`.EntryInfo` check the type + +======== =========================== +Enforce Method of enforcement +======== =========================== +None Any value will work +type type(value) +list list.index(value) +regex regex.match(value) != None +function function(value) +======== =========================== + +If your enforce condition is complicated or obfuscated, you can add a +docstring using the ``enforce_doc`` keyword that explains the rule. +(This may be helpful for regex matches which are difficult for humans +to read) + +Fields that are important to the item can be marked as mandatory with +``optional=False`` and should have no default value. + +When entering information you will not necessarily see a difference between +optional and mandatory :class:`.EntryInfo`, however the database client will +reject the item if these fields do not have the requisite values set. + +Loading your Object +^^^^^^^^^^^^^^^^^^^ + +A container's primary role is containing the information necessary to load the +Python representation of an object. + +Internally, happi keeps track of all containers by way of its registry, the +:class:`~happi.containers.HappiRegistry`. + +This information is stored as a ``device_class``, ``args`` and ``kwargs``. The +former stores a string that indicates the Python class of the item, the other +two indicate the information that is needed to instantiate it. With this +information both :func:`.from_container` and :func:`.load_device` are able to +handle importing modules and instantiating your object. + +.. note:: + + happi will attach the original metadata with a fixed attribute name ``.md`` + to your object. You can use this to keep track of the container metadata + used to instantiate your object. + + This can be disabled by setting ``attach_md`` to ``False`` in + :func:`.from_container`. + +Often, information contained in the ``args`` or ``kwargs`` will be duplicated +in other parts of the container. For instance, most ``ophyd`` objects will want +a ``name`` and ``prefix`` on initialization. Instead of repeating that +information you can just use a template and have the information automatically +populated for you by the container itself. For instance, in the aforementioned +example, ``container.args = ["{{name}}"]`` would substitute the value of +``container.name`` in as an argument. If the template contains the substituted +attribute alone, the type will also be converted. + +.. ipython:: python + + from happi import from_container + + container = MyItem(name="my_item", model_no="QABC1234", + device_class='ophyd.sim.SynSignal', + kwargs={'name': '{{name}}'}) + obj = from_container(container, attach_md=True) + obj + + +Integrating with your package +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +Happi provides some containers for your convenience, but intentionally does +not support all use cases or control systems in a monolithic fashion. + +The suggested method for supporting your new package would be to make your +package have a dependency on happi, of course, and subclass :class:`.HappiItem` +to make a new container in your own package. + +Then, add an +`entry point `_ +specified by the **happi.containers** keyword to your package's ``pyproject.toml``. +Example entry points can be found `here +`_. + +:class:`~happi.containers.HappiRegistry` takes care of loading the entry points +and making them available throughout the library. + + +.. _convention_label: + +Built-in Container Conventions +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +In order for the database to be as easy to parse as possible we need to +establish conventions on how information is entered. Please read through this +before entering any information into the database. + + +HappiItem Entries ++++++++++++++++++ + +These are fields that are common to all Happi items. + + **name** + + This is simply a short name we can use to refer to the item. + + + **device_class** + + This is the full class name, which lets happi know how to instantiate your + item. + + The ``device_class`` name remains for backward-compatibility reasons. Thinking + of it as ``class_name`` or ``creator_callable`` would be more apt. + + .. note:: + + This may also be the name of a factory function - happi only cares that + it's callable. + + **args** + + Argument list to be passed on instantiation. May contain templated macros such + as ``{{name}}``. + + **kwargs** + + Keyword argument dictionary to be passed on instantiation. May contain + templated macros such as ``{{name}}``. + + **active** + + Is the object actively deployed? + + **documentation** + + A brief set of information about the object. + + +OphydItem entries ++++++++++++++++++ + +`ophyd `_ has first-class support in happi - but +not much is required on top of the base HappiItem to support it. + + **prefix** + + This should be the prefix for all of the PVs contained within the device. It + does not matter if this is an invalid record by itself. + +LCLSItem entries +++++++++++++++++ + +This class is now part of `pcdsdevices +`_. It remains documented here as +PCDS is the original developer and primary user of happi as of the time of +writing. If you intend to use the same metadata that we do, please copy and +repurpose the ``LCLSItem`` class. + + **beamline** + + Beamline is required. While it is expected to be one of the following, it + is not enforced:: + + CXI + HXD + ICL + KFE + LFE + MEC + MFX + PBT + RIX + TMO + TXI + XCS + XPP + + + **z** + + Position of the device on the z-axis in the LCLS coordinates. + + **location_group** + + The group of this device in terms of its location. This is primarily + used for LUCID's grid. + + **functional_group** + + The group of this device in terms of its function. This is primarily + used for LUCID's grid. + + **stand** + + Acronym for stand, must be three alphanumeric characters like an LCLSI stand + (e.g. DG3) or follow the LCLSII stand naming convention (e.g. L0S04). + + **lightpath** + + If the device should be included in the LCLS `Lightpath + `_. + + **embedded_screen** + + Path to an embeddable PyDM control screen for this device. + + **detailed_screen** + + Path to a detailed PyDM control screen for this device. + + **engineering_screen** + + Path to a detailed engineering PyDM control screen for this device. diff --git a/v2.6.0/_sources/generated/happi.backends.json_db.JSONBackend.rst.txt b/v2.6.0/_sources/generated/happi.backends.json_db.JSONBackend.rst.txt new file mode 100644 index 00000000..0a8591d5 --- /dev/null +++ b/v2.6.0/_sources/generated/happi.backends.json_db.JSONBackend.rst.txt @@ -0,0 +1,38 @@ +happi.backends.json\_db.JSONBackend +=================================== + +.. currentmodule:: happi.backends.json_db + +.. autoclass:: JSONBackend + + + .. automethod:: __init__ + + + .. rubric:: Methods + + .. autosummary:: + + ~JSONBackend.__init__ + ~JSONBackend.clear_cache + ~JSONBackend.delete + ~JSONBackend.find + ~JSONBackend.find_range + ~JSONBackend.find_regex + ~JSONBackend.get_by_id + ~JSONBackend.initialize + ~JSONBackend.load + ~JSONBackend.save + ~JSONBackend.store + + + + + + .. rubric:: Attributes + + .. autosummary:: + + ~JSONBackend.all_items + + \ No newline at end of file diff --git a/v2.6.0/_sources/generated/happi.backends.mongo_db.MongoBackend.rst.txt b/v2.6.0/_sources/generated/happi.backends.mongo_db.MongoBackend.rst.txt new file mode 100644 index 00000000..983eda3d --- /dev/null +++ b/v2.6.0/_sources/generated/happi.backends.mongo_db.MongoBackend.rst.txt @@ -0,0 +1,35 @@ +happi.backends.mongo\_db.MongoBackend +===================================== + +.. currentmodule:: happi.backends.mongo_db + +.. autoclass:: MongoBackend + + + .. automethod:: __init__ + + + .. rubric:: Methods + + .. autosummary:: + + ~MongoBackend.__init__ + ~MongoBackend.clear_cache + ~MongoBackend.delete + ~MongoBackend.find + ~MongoBackend.find_range + ~MongoBackend.find_regex + ~MongoBackend.get_by_id + ~MongoBackend.save + + + + + + .. rubric:: Attributes + + .. autosummary:: + + ~MongoBackend.all_items + + \ No newline at end of file diff --git a/v2.6.0/_sources/generated/happi.backends.qs_db.QSBackend.rst.txt b/v2.6.0/_sources/generated/happi.backends.qs_db.QSBackend.rst.txt new file mode 100644 index 00000000..5babcbc1 --- /dev/null +++ b/v2.6.0/_sources/generated/happi.backends.qs_db.QSBackend.rst.txt @@ -0,0 +1,39 @@ +happi.backends.qs\_db.QSBackend +=============================== + +.. currentmodule:: happi.backends.qs_db + +.. autoclass:: QSBackend + + + .. automethod:: __init__ + + + .. rubric:: Methods + + .. autosummary:: + + ~QSBackend.__init__ + ~QSBackend.clear_cache + ~QSBackend.delete + ~QSBackend.find + ~QSBackend.find_range + ~QSBackend.find_regex + ~QSBackend.get_by_id + ~QSBackend.initialize + ~QSBackend.load + ~QSBackend.save + ~QSBackend.store + + + + + + .. rubric:: Attributes + + .. autosummary:: + + ~QSBackend.all_items + ~QSBackend.translations + + \ No newline at end of file diff --git a/v2.6.0/_sources/index.rst.txt b/v2.6.0/_sources/index.rst.txt new file mode 100644 index 00000000..beae100e --- /dev/null +++ b/v2.6.0/_sources/index.rst.txt @@ -0,0 +1,54 @@ +HAPPI - Heuristic Access to Positions of Photon Instruments +=========================================================== + +Background +^^^^^^^^^^ + +Happi is a database-backed library that was originally created to hold +information about devices along SLAC's Linac Coherent Light Source beamline. +Though initially purpose-built, happi provides a framework for general indexing +of devices or *things* that correspond to Python objects. + +Happi will help you create and index your objects, search through them, and +provide relevant metadata based on the object type. + +Terminology Summary +^^^^^^^^^^^^^^^^^^^ + +* The happi client communicates with pre-configured database using an internal + "backend". Supported backends include JSON (with a file on disk) and MongoDB + currently. +* A ``HappiItem`` container class describes metadata about a Python object and + information on how to instantiate it. +* ``HappiItem`` may be customized for your own purposes through subclassing. +* Container classes have entries - marked by ``EntryInfo`` instances - that + define the top-level keys and values of the item. +* The basic ``HappiItem`` has entries that tell happi how to import and + instantiate a specific Python object. The fields required for this are + ``device_class``, ``args``, and ``kwargs``. In short, the effect of loading + this device would be to ``import device_class`` and instantiate it by way of + ``device_class(*args, **kwargs)``. +* This resulting object is also referred to as a ``Device``, borrowing the name + from the library ophyd. + + + .. toctree:: + :maxdepth: 3 + :caption: Usage + + containers.rst + client.rst + cli.rst + +.. toctree:: + :maxdepth: 3 + :caption: API Documentation + + api.rst + +.. toctree:: + :maxdepth: 2 + :caption: Information + + releases.rst + upcoming_changes.rst diff --git a/v2.6.0/_sources/releases.rst.txt b/v2.6.0/_sources/releases.rst.txt new file mode 100644 index 00000000..624c0111 --- /dev/null +++ b/v2.6.0/_sources/releases.rst.txt @@ -0,0 +1,876 @@ +Release History +############### + + +v2.6.0 (2024-12-19) +=================== + +Features +-------- +- Updated `happi load` to support searching and loading in one user-friendly expression. The load function now gathers the results of each search term individually and loads the union of the results. + +Maintenance +----------- +- Make running happi repair only saves an item if it actually got changed during the repair process +- Fixes issue in test suite, making tst_base_pim2 a loadable SimpleNamespacce +- Add example .cfg and some more instructions on using happi cli +- Make pre-release notes script default to just using vi if EDITOR env var is not set. +- Fix a few dead links in the docs, add to contributing doc to make 1st time dev instructions bit more clear + +Contributors +------------ +- janeliu-slac +- nstelter-slac +- tangkong + + + +v2.5.0 (2023-12-19) +=================== + +Features +-------- +- Adds more user-friendly qt search widget + +Bugfixes +-------- +- Fixes audit output table, preventing names from being dropped + +Maintenance +----------- +- Adjusts cli audit output to work better for file redirects +- Fix conda recipe to use "run_constrained" not "run-constrained" + +Contributors +------------ +- tangkong +- klauer + + + +v2.4.0 (2023-09-27) +=================== + +Features +-------- +- Added ``happi.audit.audit()`` which can be used to programmatically audit + happi items. + +Bugfixes +-------- +- Fixes bug where `happi transfer` was not filling default values properly +- Fixes conftest.trim_split_output, which was effectively a no-op. Touches up affected tests +- Issue 302: Add functionality to happi 'repair' that ensures that the name and id fields of a device are the same. +- Removes an extra pcdsutils import from test_cli.py that is not properly caught by error handling + +Maintenance +----------- +- Adds error handling for the temporary file created when initializing a json backend object. +- Changes format of temporary file name generation to contain only a unique hash. +- Tests modified to no longer assert stdout matches expected strings. Rather the effect of the + command being tested is verified independently. The `assert_match_expected` helper is still + used, but will now print mismatches instead of asserting them. +- Allows `happi update` to handle json-backend-type payloads +- Adds pcdsutils and pcdsdevices to environment requirements in conda recipe and dev requirements +- Removes pcdsutils and pcdsdevices from extra testing requirements in github workflow +- The ``happi audit`` CLI entrypoint has been modified to use + ``happi.audit.audit()``. +- Updates mongo backend to handle authSource, require connection information (host, user, etc) +- Documents bson dependency. Bson is vendored by pymongo, which instructs + users to not install bson from pypi (`pymongo readme `) + +Contributors +------------ +- klauer +- laura-king +- tangkong + + + +v2.3.0 (2023-06-30) +=================== + +Features +-------- +- CLI command ``happi config edit`` - open config file in ``$EDITOR`` +- CLI command ``happi config init`` - create new config file with default options +- CLI command ``happi config show`` - show location & contents of config file +- Extend the config searching mechanism to check the platformdirs config directory. + The happi config file path is taken from the ``HAPPI_CFG`` environment variable, + but if the variable is not set then the following locations are searched in order + for files named ``.happi.cfg`` or ``happi.cfg``: + + - The location specified by the ``XDG_CONFIG_HOME`` environment variable + - ``~/.config`` + - (**new**) The location specified by ``platformdirs.user_config_dir("happi")`` + +Maintenance +----------- +- Add dependency on `platformdirs `_. +- Update build requirements to use pip-provided extras for documentation and test builds + +Contributors +------------ +- tangkong +- untzag + + + +v2.2.0 (2023-05-08) +=================== + +Features +-------- +- Adds a hook in ``happi.loader.from_container`` that runs the method + ``post_happi_md`` on an instantiated object after the metadata + container has been attached. + This allows a clear method for objects to interact with + happi metadata if desired. + +Maintenance +----------- +- Makes ``HappiDeviceTreeView`` more tolerant of items with missing metadata keys. + Items missing the key used to group the tree view will be organized + into a catch-all "[KEY NOT FOUND]" group. + +Contributors +------------ +- tangkong + + + +v2.1.0 (2023-04-03) +=================== + +Features +-------- +- Adds ``happi repair`` command, for synchronizing backend database with fields expected by container. + Adds a corresponding audit function. +- Adds audit functions that check the connection status of all signals in an + ophyd device (``check_wait_connection``) and verify any fields requested by + args/kwargs exist in the database (``check_args_kwargs_match``). +- Adds ``happi audit -d/--details`` option to print the source of a requested + audit function. +- Adds the ``happi delete`` CLI tool for deleting entries from the happi database. + +Bugfixes +-------- +- Fix an issue where an ill-timed interrupt of the json backend's + ``store`` operation could truncate the data file. This also removes + the implicit/optional dependency on ``fcntl``. + +Maintenance +----------- +- Migrates from Travis CI to GitHub Actions for continuous integration testing, and documentation deployment. +- Updates happi to use setuptools-scm, replacing versioneer, as its version-string management tool of choice. +- Syntax has been updated to Python 3.9+ via ``pyupgrade``. +- happi has migrated to modern ``pyproject.toml``, replacing ``setup.py``. +- Sphinx 6.0 now supported for documentation building. + +Contributors +------------ +- tangkong +- zllentz + + + +v2.0.0 (2022-10-20) +=================== + +API Changes +----------- +- Removed deprecated ``happi.containers.Device`` container. +- Removed deprecated methods: + * ``happi.Client.create_device`` + * ``happi.Client.add_device`` + * ``happi.Client.find_device`` + * ``happi.Client.all_devices`` + * ``happi.Client.remove_device`` + * ``happi.SearchResult.device`` + +Features +-------- +- Added ``EntryInfo`` keyword argument ``include_default_as_kwarg``. If set to ``False``, + any keys that are included in an item's ``kwargs`` that match the default of their + corresponding ``EntryInfo`` will be omitted from the keyword arguments passed to + ``device_class`` when instantiating (loading) the item as in ``happi.loader.load_device`` or + ``SearchResult.get()``. + If the ``kwargs`` EntryInfo sets ``include_default_as_kwarg = True``, + the setting on the corresponding ``EntryInfo`` will be used to decide + whether or not to omit a keyword argument. + If the ``kwargs`` EntryInfo sets ``include_default_as_kwarg = False``, + the setting on corresponding ``EntryInfo`` will be ignored. + The default value is True on all EntryInfo instances, retaining the original behavior. +- For happi load, fall back to Python REPL if IPython is not available. +- Added MultiBackend, which allows a happi Client to serve information + from multiple databases simultaneously. Updates config parsing logic + to match. +- Added ``happi audit`` function for running checks on happi database items. +- Restored --json option for ``happi search``. + +Bugfixes +-------- +- Removed extraneous extraneous print in ``happi load``. +- Calculate a max width for shown tables based on the current terminal size + to prevent bad line wrapping. + +Maintenance +----------- +- Prevent ophyd / pyepics teardown during test suite. +- Improved error logging in happi CLI to be more consistent. + +Contributors +------------ +- JJL772 +- klauer +- tangkong + + + +v1.14.0 (2022-07-06) +==================== + +API Changes +----------- +- Added ``happi.Client.create_item`` and deprecated + ``happi.Client.create_device``. +- Added ``happi.Client.add_item`` and deprecated ``happi.Client.add_device``. +- Added ``happi.Client.find_item`` and deprecated ``happi.Client.find_device``. +- Added ``happi.Client.all_items`` and deprecated ``happi.Client.all_devices``. +- Added ``happi.Client.remove_item`` and deprecated + ``happi.Client.remove_device``. +- Deprecated ``happi.SearchResult.device`` and above deprecated items are now + scheduled for removal in the next major happi release. +- Internal backend API ``all_devices`` has been changed to ``all_items``. +- Added ``happi.Client.retain_cache_context`` for clients that desire to + control when reloading the database from a happi backend happens. +- Backend implementations may now optionally support a caching mechanism with + ``clear_cache`` being called externally by the client when desirable. +- The happi container registry now supports adding new container classes + manually by way of + ``happi.containers.registry["ContainerName"] = ContainerClass``. + +Features +-------- +- Significant performance increase for JSON-backed happi clients. +- Makes ``SearchResult`` hashable +- Uses hashable ``SearchResult`` in happi search cli command +- JSON database paths may now be relative to the configuration file. +- Added ``happi benchmark`` for identifying which items are slow to load. +- Added ``happi profile`` for identifying why particular items are slow to load. + +Bugfixes +-------- +- Fix a rare race condition related to reading a json device database + twice in a command line search command between database updates. +- Issue where happi Client would repeatedly (and unnecessarily) make database + backend calls has been fixed. +- Allow int search values to match their float counterparts +- The happi container registry is loaded at first use and not on import. This + can result in increased performance where the happi database is not used. + It also fixes a scenario in which a module that defines a happi container + attempts to import certain classes from happi. + +Maintenance +----------- +- Old terminology for ``HappiItem`` instances has been scrubbed and clarified + in documentation. +- Test suite and documentation has been updated to reflect trajectory of + deprecated methods and naming. +- Added relaxed flake8 configuration. +- Remove happi.device.Device from tests to avoid deprecation warnings +- Add type annotations to test suite +- Clean up fixture usage and separate ``three_valves`` fixture into ``three_valves`` and ``client_with_three_valves`` +- add pre-release notes scripts +- More documentation about the happi container registry was added. +- Refactored CLI slightly to re-use searching logic. + +Contributors +------------ +- JJL772 +- klauer +- tangkong +- zllentz + + +v1.13.0 (2022-06-03) +==================== + +Features +-------- +- Added the ``enforce_doc`` argument to ``EntryInfo``. This lets us explain + what the entry info represents and how it is meant to be filled out + in more explicit words when it would be helpful to do. +- Added methods to client and cli entry points for changing the container + of a happi item. This will walk the user through the process of + switching to or between custom containers while making sure we adhere + to the defined ``EntryInfo``. Check out ``happi transfer --help`` for + command-line usage or ``Client.change_container`` for library usage. +- Added the option to pick between glob and regex searching from the CLI, + rather than only allowing glob as in the past. + Give ``happi search --regex`` a try and check out ``happi search --help`` + for more information. + +Fixes +----- +- Fixed an issue where it was previously impossible to input dictionary + and list fields using the CLI. +- Fixed handling of numeric values in ``happi search``. +- Fixed range searching logic for multiple range searches in one query. +- Fixed the ambiguity between a search returning no results (exit code 0) + and a search being malformed (exit code 1). + +Maintenance +----------- +- Refactored the CLI to use ``click`` instead of bare ``argparse``. + This implementation is much cleaner and will lead to more advanced + CLI features in the future. +- ``psdm_qs_cli`` and ``pymongo`` are no longer required dependencies of + ``happi``. These have been reclassified into the ``run_constrained`` + portion of the conda recipe bundled in this repository and will also + be adjusted on conda-forge. +- Improved usage and cleanup of temporary files when running the happi + test suite. +- Restored the automatic documention uploads. +- Added/modified test cases to better cover search behavior. + +Contributors +------------ +- tangkong + + +v1.12.0 (2022-03-31) +==================== + +Features +-------- +- Add optional per-device load timers to help identify slow-loading devices. + +Fixes +----- +- Fixed an issue where missing keys could cause a find match to fail. +- Switch on-import fcntl warning to debug to reduce spam. + +Contributors +------------ +- klauer + + +v1.11.0 (2022-02-07) +==================== + +Features +-------- +- Add ``--names`` flag to the ``happi search`` command. This causes the + search to output only the names of the matching devices. This is useful + for using the output of ``happi search`` inside another ``happi`` command, + for example: ``happi load $(happi search "*" --names)``. + +Contributors +------------ +- unztag + + +v1.10.1 (2021-11-15) +==================== + +Bugfixes +-------- +- Fix a logging format error in ``Client.from_config`` + +Contributors +------------ +- klauer + + +v1.10.0 (2021-09-27) +==================== + +Features +-------- +- Add ``happi container-registry`` command-line utility. This shows the user + which ``happi`` containers are registered and available in their session. + This is very useful for debugging purposes and more generally to + understand which containers are available. + +Maintenance +----------- +- Fix error in the docs build. +- Misc updates to the CI. + +Contributors +------------ +- unztag +- zrylettc + + +v1.9.0 (2021-02-10) +=================== + +Features +-------- +- Add ``happi update `` command-line utility. This allows the user to + pipe in a json blob to the happi CLI to update their database. This enables + bulk updates in a convenient way. +- Allow short (under 3) and long (over 80) character names. Users who want + further restrictions on names for their projects are encouraged to create + a custom container. +- Allow arbitrary user functions to be passed in to the EntryInfo ``enforce`` + field, for custom validation of data. These functions should mimic the + signature and behavior of the built-in types: take one argument, return the + value back as-is or cast to the type, raise ValueError if there is an issue. + +Bugfixes +-------- +- Properly expand home directory (~) in the JSON backend database path. +- Require that the name field does not conflict with reserved Python keywords. +- Fix an issue where boolean fields edited from the command-line were always + interpreted as True. + +Maintenance +----------- +- Update CI to PCDS standards. + +Contributors +------------ +- klauer +- unztag +- zllentz + + +v1.8.4 (2021-01-08) +=================== + +Bugfixes +-------- +- Fix an issue where a package implementing a happi containers entrypoint + could fail to be picked up by the happi registry based on the import order. + +Maintenance +----------- +- Revisions, clarifications, and additions to the documentation. +- Docstring style fixes. + +Contributors +------------ +- klauer +- untzag +- zrylettc + + +v1.8.3 (2020-11-17) +=================== + +Bugfixes +-------- +- Fix loading of acromag io channels from the lcls questionnaire. + Previously, these were loading full acromag devices instead of + individual channels and were using the incorrect PVs. +- Fix loading of Beckhoff axis motors from the lcls questionnaire. + Previously, these were misidentified as IMS motors. + +Maintenance +----------- +- Refactor questionnaire entry creation to accomplish the above. + +Contributors +------------ +- cristinasewell + + +v1.8.2 (2020-10-20) +=================== + +Bugfixes +-------- +- Removed hanging raise command from qs loader (hotfix) + + +v1.8.1 (2020-10-21) +=================== + +Bugfixes +-------- +- Fix various issues causing questionnaire loads to fail. +- Fix clarity issues for failed questionnaire loads. + +Maintenance +----------- +- Break up the questionnaire loading routines into more maintainable + chunks, reorganizing and cleaning up the code. +- Allow introspection of questionnaire state for debugging. + + +v1.8.0 (2020-10-07) +=================== + +Features +-------- +- Adds bash/fzf-based fuzzy finding of happi items with corresponding + activate/deactivate scripts. +- Adds ``happi search --json`` option to output JSON instead of a table. + +Maintenance +----------- +- Move IPython import to where it's needed in ``happi load``, saving + approximately half a second on any other ``happi`` CLI invocation. + + +v1.7.2 (2020-09-17) +=================== + +Bugfixes +-------- +- Fix issue with edge cases in lcls questionnaire loader +- Fix issue with unclear warnings on creating malformed entries + +Maintenance +----------- +- Improve testing coverage for CLI functions + + +v1.7.1 (2020-08-20) +=================== + +Bugfixes +-------- +- Fix cli issue where the ``--clone`` argument would fail. +- Make sure the happi cli returns usage information + if the user passes no arguments. + + +v1.7.0 (2020-08-18) +=================== + +Features +-------- +- Add cli search globbing, e.g. now the following will work: + ``happi search xpp*`` (show all devices whose names start with xpp) + +Bugfixes +-------- +- Fix issue with silent failure when editing a non-existent field. +- Fix issues related to changing an entry's name field. + +Maintenance +----------- +- Add documentation for the happi cli +- Update the db.json examples to use OphydItem + + +v1.6.1 (2020-07-01) +=================== + +Bugfixes +-------- +- Do not raise an exception on single malformed entries uncovered during + a search. Treat these as missing entries. This was causing an issue + where queries like ``all_devices`` would fail outright. +- Fix issue where ``device_cls`` string would leak through and raise a + bad/confusing exception during ``create_device`` + +Maintenance +----------- +- Reduce missing backends log messages from ``warning`` to ``debug``. +- Fix docs failing to build and related issues. +- Add ``requirements.txt`` file to ``MANIFEST.in``. + + +v1.6.0 (2020-04-30) +=================== + +- LCLS-specific containers are moved out of happi, and into + `pcdsdevices `__ +- ``OphydItem`` is now the preferred basic ``ophyd.Device`` + container, with the intention of fully deprecating ``Device`` to + avoid naming confusion +- Minor internal fixes + + +v1.5.0 (2020-04-06) +=================== + +- Refactor search methods, supporting mongo and JSON backends + + - ``search`` - search by key/value pairs as kwargs + - ``search_range`` - search for a range of values in a specific key + - ``search_regex`` - search for key/value pairs as kwargs, with + values being regular expressions + - Adds ``SearchResult`` container, allowing for access of metadata + or device instantiation + +- ``Client['item']`` supported +- ``happi.Device`` is now marked as deprecated + + - Migrate to ``happi.OphydItem`` + +- Documentation building fixed and made more accurate +- Internal refactoring + + - Reduce usage of metaclasses + - pymongo/mongomock are truly optional test dependencies now + - Added pre-commit configuration for developer quality-of-life + - ``HappiItem``\ s are now ``copy.copy()``-able + - Backends supply generators and not lists + +- Fixed many oustanding issues with the JSON backend + + +v1.4.0 (2020-03-13) +=================== + +Enhancements +------------ + +- Add an add command for cli, e.g. ``happi add`` to start an interactive + device adder +- Add an edit command for cli, e.g. ``happi edit im3l0 location=750`` + prefix=IM3L0:PPM +- Change search command syntax to be simpler (more like edit) +- Add a load command for cli, e.g. ``happi load im3l0 im1l1`` -> IPython + session plus other changes made in dev to get it working +- Add two new Happi-aware Qt widgets: HappiDeviceListView & + HappiDeviceTreeView + +Bug Fixes +--------- + +- Initialize database if it does not yet exists +- Fix broken tests + + +v1.3.0 (2019-12-10) +=================== + +Enhancements +------------ + +- Command line script allow users to search and add devices + `#84 `__ +- Base ``Container`` object now available with minimum amount of + ``EntryInfo`` `#92 `__ +- Allow Happi to load more devices from LCLS questionnaire + `#94 `__ +- New function ``list_choices`` added to ``happi.Client`` to allow user + to know what beamlines, prefixes, names, etc. will return results. +- Threaded ``load_devices`` with option to specify a callback when + devices are ready + `#67 `__ + + +v1.2.1 (2019-03-07) +=================== + +Bug Fixes +--------- + +- The test suite now passes without the ``mongomock`` backend + (`#89 `__) +- Ensure our file handles are properly closed in the JSON backend by + using context managers + (`#87 `__) + + +v1.2.0 (2018-12-19) +=================== + +Enhancements +------------ + +- ``Client`` now has a method ``load_device`` for searching the + database for a ``Container`` and then loading the corresponding + object based on ``device_class``, ``args`` and ``kwargs``. This is a + shortcut to combine two previously existing features + ``Client.find_device`` and ``happi.loader.from_container`` + +- ``Client.from_config`` will create a ``Client`` object from a + provided configuration file. You can either pass this file in + explicitly, specify it via the the environment variable + ``$HAPPI_CFG``, or it will be searched for in ``~config`` or wherever + you specify your \`$XDG_CONFIG_HOME environment variable + +- Additional keywords were added to the base ``Device`` container; + ``lightpath``, ``documentation`` and ``embedded_screen``, + ``detailed_screen`` and ``engineering_screen`` + +- There is now a base container for a ``Motor`` object. + +Deprecations +------------ + +- ``screen`` is longer a supported key. This was too generic and the + three keys detailed above allow the user more specificity. + +Fixes +----- + +- The ``JSONBackend`` no longer relies on ``fcntl`` a Linux only module + of the Python standard library. + + +v1.1.2 (2018-08-30) +=================== + +Maintenance +----------- + +- In ``from_container``, the provided container is compared against the + cached version of the device to find discrepancies. This means that + modified container objects will always load a new Device. + (`#62 `__) +- The QSBackend uses newer methods available in the psdm_qs_cli to + determine the proposal from the experiment name. This is more robust + against exotic experiment naming schemas than prior implementations + (`#68 `__) + + +v1.1.1 (2018-03-08) +=================== + +Enhancements +------------ + +- The ``QSBackend`` guesses which a type of motor based on the + ``prefix``. Currently this supports ``Newport``, ``IMS``, and + ``PMC100`` motors. While there is not an explicit dependency, this + will require ``pcdsdevices >= 0.5.0`` to load properly + (`#51 `__) + +Bug Fixes +--------- + +- Templating is more robust when dealing with types. This includes a + fatal case where the default for an ``EntryInfo`` is ``None`` + (`#50 `__) +- A proper error message is returned if an entry in the table does not + have the requisite information to load + (`#53 `__ ) + + +v1.1.0 (2018-02-13) +=================== + +Ownership of this repository has been transferred to +https://github.com/pcdshub + +Enhancements +------------ + +Happi now has a cache so the repeated requests to load the same device +do not spawn multiple objects. + +Maintenance +----------- + +- Cleaner logging messages +- ``QSBackend`` was expanded to accommodate different keyword arguments + associated with different authentication methods. + + +v1.0.0 (2018-01-31) +=================== + +Enhancements +------------ + +- ``happi`` now handles loading devices with the built-in ``EntryInfo`` + -> args, kwargs and device_class. Simply enter the proper information + in these fields, either directly inputting information or using + ``jinja2`` templating. The functions ``from_container`` and + ``load_devices`` will then handle the necessary imports and + initialize devices for you +- Select which backend you want to use with the environment variable + ``$HAPPI_BACKEND`` +- Backend to read from the PCDS Questionnaire +- All containers work out of the box with ``pcdsdevices >= 0.3.0`` ## + API +- All backends are stored in the ``backends`` directory. +- The default plugin is now considered to be ``JSONBackend`` +- The function formerly called ``load_device`` is now ``find_device``. + +Build +----- + +- ``jinja2`` is now a dependency +- ``psdm_qs_cli`` is now an optional dependency if you want to use the + Questionnaire backend +- ``pymongo`` is now an optional dependency if you do not want to use + the MongoDB backend +- Only tested against Python ``3.5.x`` and ``3.6.x`` +- Sent to the ``pcds-tag`` and ``pcds-dev`` Anaconda channels instead + of the ``skywalker`` channels + + +v0.5.0 (2017-11-11) +=================== + +Enhancements +------------ + +- ``happi`` now supports multiple backends. The required database + operations are templated in the ``happi.backends.Backend`` The + existing mongoDB support was kept as the default, but the an + additional JSON backend was added. The choice of database type can be + entered as an argument to the ``happi.Client`` +- Conda builds of ``happi`` are now available at ``skywalker-tag`` and + ``skywalker-dev`` + +Bug Fixes +--------- + +- Devices comparison now works properly. The listed prefix and names + are compared. + +API Changes +----------- + +- ``Mirror`` container has been changed to the more specific name + ``OffsetMirror`` + +Deprecations +------------ + +- ``happi`` will no longer support Python 2.7 + + +v0.4.0 (2017-04-04) +=================== + +Bug Fixes +--------- + +- Removed dependency on mongomock in conda-recipe +- ``MockClient`` creates entire ``device_types`` container mapping + +API Changes +----------- + +- Renamed alias -> name, and base -> prefix for Ophyd compatibility + + +v0.3.0 (2017-03-22) +=================== + +Enhancements +------------ + +- Added Python 2.7 support +- Added macros keyword for EDM support +- Added CI tools for Travis, Codecov +- Changed tests to use a ``mongomock.MockClient`` instead of an actual + mongoDB instance +- Device can now ``show_info`` and print a table output of all entered + information + +Bug Fixes +--------- + +- ``active`` EntryInfo should default to True + +API Changes +----------- + +- Moved the tests directory into the package to make it easily + importable by other modules hoping to use a MockClient +- Introduced explicit dependencies on ``six``, ``mongomock``, and + ``prettytable`` diff --git a/v2.6.0/_sources/upcoming_changes.rst.txt b/v2.6.0/_sources/upcoming_changes.rst.txt new file mode 100644 index 00000000..1323597c --- /dev/null +++ b/v2.6.0/_sources/upcoming_changes.rst.txt @@ -0,0 +1,8 @@ +Upcoming Changes +################ + +.. toctree:: + :maxdepth: 1 + :glob: + + upcoming_release_notes/[0-9]* diff --git a/v2.6.0/_static/_sphinx_javascript_frameworks_compat.js b/v2.6.0/_static/_sphinx_javascript_frameworks_compat.js new file mode 100644 index 00000000..81415803 --- /dev/null +++ b/v2.6.0/_static/_sphinx_javascript_frameworks_compat.js @@ -0,0 +1,123 @@ +/* Compatability shim for jQuery and underscores.js. + * + * Copyright Sphinx contributors + * Released under the two clause BSD licence + */ + +/** + * small helper function to urldecode strings + * + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL + */ +jQuery.urldecode = function(x) { + if (!x) { + return x + } + return decodeURIComponent(x.replace(/\+/g, ' ')); +}; + +/** + * small helper function to urlencode strings + */ +jQuery.urlencode = encodeURIComponent; + +/** + * This function returns the parsed url parameters of the + * current request. 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---------------------------------------------------------------- */ + +table.docutils { + margin-top: 10px; + margin-bottom: 10px; + border: 0; + border-collapse: collapse; +} + +table.align-center { + margin-left: auto; + margin-right: auto; +} + +table.align-default { + margin-left: auto; + margin-right: auto; +} + +table caption span.caption-number { + font-style: italic; +} + +table caption span.caption-text { +} + +table.docutils td, table.docutils th { + padding: 1px 8px 1px 5px; + border-top: 0; + border-left: 0; + border-right: 0; + border-bottom: 1px solid #aaa; +} + +th { + text-align: left; + padding-right: 5px; +} + +table.citation { + border-left: solid 1px gray; + margin-left: 1px; +} + +table.citation td { + border-bottom: none; +} + +th > :first-child, +td > :first-child { + margin-top: 0px; +} + +th > :last-child, +td > :last-child { + margin-bottom: 0px; +} + +/* -- figures --------------------------------------------------------------- */ + +div.figure, figure { + 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+ +/** + * Simple result scoring code. + */ +if (typeof Scorer === "undefined") { + var Scorer = { + // Implement the following function to further tweak the score for each result + // The function takes a result array [docname, title, anchor, descr, score, filename] + // and returns the new score. + /* + score: result => { + const [docname, title, anchor, descr, score, filename] = result + return score + }, + */ + + // query matches the full name of an object + objNameMatch: 11, + // or matches in the last dotted part of the object name + objPartialMatch: 6, + // Additive scores depending on the priority of the object + objPrio: { + 0: 15, // used to be importantResults + 1: 5, // used to be objectResults + 2: -5, // used to be unimportantResults + }, + // Used when the priority is not in the mapping. + objPrioDefault: 0, + + // query found in title + title: 15, + partialTitle: 7, + // query found in terms + term: 5, + partialTerm: 2, + }; +} + +const _removeChildren = (element) => { + while (element && element.lastChild) element.removeChild(element.lastChild); +}; + +/** + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping + */ +const _escapeRegExp = (string) => + string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string + +const _displayItem = (item, searchTerms, highlightTerms) => { + const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; + const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; + const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; + const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; + const contentRoot = document.documentElement.dataset.content_root; + + const [docName, title, anchor, descr, score, _filename] = item; + + let listItem = document.createElement("li"); + let requestUrl; + let linkUrl; + if (docBuilder === "dirhtml") { + // dirhtml builder + let dirname = docName + "/"; + if (dirname.match(/\/index\/$/)) + dirname = dirname.substring(0, dirname.length - 6); + else if (dirname === "index/") dirname = ""; + requestUrl = contentRoot + dirname; + linkUrl = requestUrl; + } else { + // normal html builders + requestUrl = contentRoot + docName + docFileSuffix; + linkUrl = docName + docLinkSuffix; + } + let linkEl = listItem.appendChild(document.createElement("a")); + linkEl.href = linkUrl + anchor; + linkEl.dataset.score = score; + linkEl.innerHTML = title; + if (descr) { + listItem.appendChild(document.createElement("span")).innerHTML = + " (" + descr + ")"; + // highlight search terms in the description + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + } + else if (showSearchSummary) + fetch(requestUrl) + .then((responseData) => responseData.text()) + .then((data) => { + if (data) + listItem.appendChild( + Search.makeSearchSummary(data, searchTerms, anchor) + ); + // highlight search terms in the summary + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + }); + Search.output.appendChild(listItem); +}; +const _finishSearch = (resultCount) => { + Search.stopPulse(); + Search.title.innerText = _("Search Results"); + if (!resultCount) + Search.status.innerText = Documentation.gettext( + "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." + ); + else + Search.status.innerText = _( + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); +}; +const _displayNextItem = ( + results, + resultCount, + searchTerms, + highlightTerms, +) => { + // results left, load the summary and display it + // this is intended to be dynamic (don't sub resultsCount) + if (results.length) { + _displayItem(results.pop(), searchTerms, highlightTerms); + setTimeout( + () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), + 5 + ); + } + // search finished, update title and status message + else _finishSearch(resultCount); +}; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; + +/** + * Default splitQuery function. Can be overridden in ``sphinx.search`` with a + * custom function per language. + * + * The regular expression works by splitting the string on consecutive characters + * that are not Unicode letters, numbers, underscores, or emoji characters. + * This is the same as ``\W+`` in Python, preserving the surrogate pair area. + */ +if (typeof splitQuery === "undefined") { + var splitQuery = (query) => query + .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu) + .filter(term => term) // remove remaining empty strings +} + +/** + * Search Module + */ +const Search = { + _index: null, + _queued_query: null, + _pulse_status: -1, + + htmlToText: (htmlString, anchor) => { + const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); + for (const removalQuery of [".headerlink", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content + const docContent = htmlElement.querySelector('[role="main"]'); + if (docContent) return docContent.textContent; + + console.warn( + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." + ); + return ""; + }, + + init: () => { + const query = new URLSearchParams(window.location.search).get("q"); + document + .querySelectorAll('input[name="q"]') + .forEach((el) => (el.value = query)); + if (query) Search.performSearch(query); + }, + + loadIndex: (url) => + (document.body.appendChild(document.createElement("script")).src = url), + + setIndex: (index) => { + Search._index = index; + if (Search._queued_query !== null) { + const query = Search._queued_query; + Search._queued_query = null; + Search.query(query); + } + }, + + hasIndex: () => Search._index !== null, + + deferQuery: (query) => (Search._queued_query = query), + + stopPulse: () => (Search._pulse_status = -1), + + startPulse: () => { + if (Search._pulse_status >= 0) return; + + const pulse = () => { + Search._pulse_status = (Search._pulse_status + 1) % 4; + Search.dots.innerText = ".".repeat(Search._pulse_status); + if (Search._pulse_status >= 0) window.setTimeout(pulse, 500); + }; + pulse(); + }, + + /** + * perform a search for something (or wait until index is loaded) + */ + performSearch: (query) => { + // create the required interface elements + const searchText = document.createElement("h2"); + searchText.textContent = _("Searching"); + const searchSummary = document.createElement("p"); + searchSummary.classList.add("search-summary"); + searchSummary.innerText = ""; + const searchList = document.createElement("ul"); + searchList.classList.add("search"); + + const out = document.getElementById("search-results"); + Search.title = out.appendChild(searchText); + Search.dots = Search.title.appendChild(document.createElement("span")); + Search.status = out.appendChild(searchSummary); + Search.output = out.appendChild(searchList); + + const searchProgress = document.getElementById("search-progress"); + // Some themes don't use the search progress node + if (searchProgress) { + searchProgress.innerText = _("Preparing search..."); + } + Search.startPulse(); + + // index already loaded, the browser was quick! + if (Search.hasIndex()) Search.query(query); + else Search.deferQuery(query); + }, + + _parseQuery: (query) => { + // stem the search terms and add them to the correct list + const stemmer = new Stemmer(); + const searchTerms = new Set(); + const excludedTerms = new Set(); + const highlightTerms = new Set(); + const objectTerms = new Set(splitQuery(query.toLowerCase().trim())); + splitQuery(query.trim()).forEach((queryTerm) => { + const queryTermLower = queryTerm.toLowerCase(); + + // maybe skip this "word" + // stopwords array is from language_data.js + if ( + stopwords.indexOf(queryTermLower) !== -1 || + queryTerm.match(/^\d+$/) + ) + return; + + // stem the word + let word = stemmer.stemWord(queryTermLower); + // select the correct list + if (word[0] === "-") excludedTerms.add(word.substr(1)); + else { + searchTerms.add(word); + highlightTerms.add(queryTermLower); + } + }); + + if (SPHINX_HIGHLIGHT_ENABLED) { // set in sphinx_highlight.js + localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" ")) + } + + // console.debug("SEARCH: searching for:"); + // console.info("required: ", [...searchTerms]); + // console.info("excluded: ", [...excludedTerms]); + + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + + _removeChildren(document.getElementById("search-progress")); + + const queryLower = query.toLowerCase().trim(); + for (const [title, foundTitles] of Object.entries(allTitles)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { + for (const [file, id] of foundTitles) { + const score = Math.round(Scorer.title * queryLower.length / title.length); + const boost = titles[file] === title ? 1 : 0; // add a boost for document titles + normalResults.push([ + docNames[file], + titles[file] !== title ? `${titles[file]} > ${title}` : title, + id !== null ? "#" + id : "", + null, + score + boost, + filenames[file], + ]); + } + } + } + + // search for explicit entries in index directives + for (const [entry, foundEntries] of Object.entries(indexEntries)) { + if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ + docNames[file], + titles[file], + id ? "#" + id : "", + null, + score, + filenames[file], + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } + } + } + } + + // lookup as object + objectTerms.forEach((term) => + normalResults.push(...Search.performObjectSearch(term, objectTerms)) + ); + + // lookup as search terms in fulltext + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + + // let the scorer override scores with a custom scoring function + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; + + // remove duplicate search results + // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept + let seen = new Set(); + results = results.reverse().reduce((acc, result) => { + let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(','); + if (!seen.has(resultStr)) { + acc.push(result); + seen.add(resultStr); + } + return acc; + }, []); + + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); + + // for debugging + //Search.lastresults = results.slice(); // a copy + // console.info("search results:", Search.lastresults); + + // print the results + _displayNextItem(results, results.length, searchTerms, highlightTerms); + }, + + /** + * search for object names + */ + performObjectSearch: (object, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const objects = Search._index.objects; + const objNames = Search._index.objnames; + const titles = Search._index.titles; + + const results = []; + + const objectSearchCallback = (prefix, match) => { + const name = match[4] + const fullname = (prefix ? prefix + "." : "") + name; + const fullnameLower = fullname.toLowerCase(); + if (fullnameLower.indexOf(object) < 0) return; + + let score = 0; + const parts = fullnameLower.split("."); + + // check for different match types: exact matches of full name or + // "last name" (i.e. last dotted part) + if (fullnameLower === object || parts.slice(-1)[0] === object) + score += Scorer.objNameMatch; + else if (parts.slice(-1)[0].indexOf(object) > -1) + score += Scorer.objPartialMatch; // matches in last name + + const objName = objNames[match[1]][2]; + const title = titles[match[0]]; + + // If more than one term searched for, we require other words to be + // found in the name/title/description + const otherTerms = new Set(objectTerms); + otherTerms.delete(object); + if (otherTerms.size > 0) { + const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase(); + if ( + [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0) + ) + return; + } + + let anchor = match[3]; + if (anchor === "") anchor = fullname; + else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname; + + const descr = objName + _(", in ") + title; + + // add custom score for some objects according to scorer + if (Scorer.objPrio.hasOwnProperty(match[2])) + score += Scorer.objPrio[match[2]]; + else score += Scorer.objPrioDefault; + + results.push([ + docNames[match[0]], + fullname, + "#" + anchor, + descr, + score, + filenames[match[0]], + ]); + }; + Object.keys(objects).forEach((prefix) => + objects[prefix].forEach((array) => + objectSearchCallback(prefix, array) + ) + ); + return results; + }, + + /** + * search for full-text terms in the index + */ + performTermsSearch: (searchTerms, excludedTerms) => { + // prepare search + const terms = Search._index.terms; + const titleTerms = Search._index.titleterms; + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + + const scoreMap = new Map(); + const fileMap = new Map(); + + // perform the search on the required terms + searchTerms.forEach((word) => { + const files = []; + const arr = [ + { files: terms[word], score: Scorer.term }, + { files: titleTerms[word], score: Scorer.title }, + ]; + // add support for partial matches + if (word.length > 2) { + const escapedWord = _escapeRegExp(word); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } + } + + // no match but word was a required one + if (arr.every((record) => record.files === undefined)) return; + + // found search word in contents + arr.forEach((record) => { + if (record.files === undefined) return; + + let recordFiles = record.files; + if (recordFiles.length === undefined) recordFiles = [recordFiles]; + files.push(...recordFiles); + + // set score for the word in each file + recordFiles.forEach((file) => { + if (!scoreMap.has(file)) scoreMap.set(file, {}); + scoreMap.get(file)[word] = record.score; + }); + }); + + // create the mapping + files.forEach((file) => { + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); + }); + }); + + // now check if the files don't contain excluded terms + const results = []; + for (const [file, wordList] of fileMap) { + // check if all requirements are matched + + // as search terms with length < 3 are discarded + const filteredTermCount = [...searchTerms].filter( + (term) => term.length > 2 + ).length; + if ( + wordList.length !== searchTerms.size && + wordList.length !== filteredTermCount + ) + continue; + + // ensure that none of the excluded terms is in the search result + if ( + [...excludedTerms].some( + (term) => + terms[term] === file || + titleTerms[term] === file || + (terms[term] || []).includes(file) || + (titleTerms[term] || []).includes(file) + ) + ) + break; + + // select one (max) score for the file. + const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w])); + // add result to the result list + results.push([ + docNames[file], + titles[file], + "", + null, + score, + filenames[file], + ]); + } + return results; + }, + + /** + * helper function to return a node containing the + * search summary for a given text. keywords is a list + * of stemmed words. + */ + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); + if (text === "") return null; + + const textLower = text.toLowerCase(); + const actualStartPosition = [...keywords] + .map((k) => textLower.indexOf(k.toLowerCase())) + .filter((i) => i > -1) + .slice(-1)[0]; + const startWithContext = Math.max(actualStartPosition - 120, 0); + + const top = startWithContext === 0 ? "" : "..."; + const tail = startWithContext + 240 < text.length ? "..." : ""; + + let summary = document.createElement("p"); + summary.classList.add("context"); + summary.textContent = top + text.substr(startWithContext, 240).trim() + tail; + + return summary; + }, +}; + +_ready(Search.init); diff --git a/v2.6.0/_static/sphinx_highlight.js b/v2.6.0/_static/sphinx_highlight.js new file mode 100644 index 00000000..8a96c69a --- /dev/null +++ b/v2.6.0/_static/sphinx_highlight.js @@ -0,0 +1,154 @@ +/* Highlighting utilities for Sphinx HTML documentation. */ +"use strict"; + +const SPHINX_HIGHLIGHT_ENABLED = true + +/** + * highlight a given string on a node by wrapping it in + * span elements with the given class name. + */ +const _highlight = (node, addItems, text, className) => { + if (node.nodeType === Node.TEXT_NODE) { + const val = node.nodeValue; + const parent = node.parentNode; + const pos = val.toLowerCase().indexOf(text); + if ( + pos >= 0 && + !parent.classList.contains(className) && + !parent.classList.contains("nohighlight") + ) { + let span; + + const closestNode = parent.closest("body, svg, foreignObject"); + const isInSVG = closestNode && closestNode.matches("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.classList.add(className); + } + + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + const rest = document.createTextNode(val.substr(pos + text.length)); + parent.insertBefore( + span, + parent.insertBefore( + rest, + node.nextSibling + ) + ); + node.nodeValue = val.substr(0, pos); + /* There may be more occurrences of search term in this node. So call this + * function recursively on the remaining fragment. + */ + _highlight(rest, addItems, text, className); + + if (isInSVG) { + const rect = document.createElementNS( + "http://www.w3.org/2000/svg", + "rect" + ); + const bbox = parent.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute("class", className); + addItems.push({ parent: parent, target: rect }); + } + } + } else if (node.matches && !node.matches("button, select, textarea")) { + node.childNodes.forEach((el) => _highlight(el, addItems, text, className)); + } +}; +const _highlightText = (thisNode, text, className) => { + let addItems = []; + _highlight(thisNode, addItems, text, className); + addItems.forEach((obj) => + obj.parent.insertAdjacentElement("beforebegin", obj.target) + ); +}; + +/** + * Small JavaScript module for the documentation. + */ +const SphinxHighlight = { + + /** + * highlight the search words provided in localstorage in the text + */ + highlightSearchWords: () => { + if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight + + // get and clear terms from localstorage + const url = new URL(window.location); + const highlight = + localStorage.getItem("sphinx_highlight_terms") + || url.searchParams.get("highlight") + || ""; + localStorage.removeItem("sphinx_highlight_terms") + url.searchParams.delete("highlight"); + window.history.replaceState({}, "", url); + + // get individual terms from highlight string + const terms = highlight.toLowerCase().split(/\s+/).filter(x => x); + if (terms.length === 0) return; // nothing to do + + // There should never be more than one element matching "div.body" + const divBody = document.querySelectorAll("div.body"); + const body = divBody.length ? divBody[0] : document.querySelector("body"); + window.setTimeout(() => { + terms.forEach((term) => _highlightText(body, term, "highlighted")); + }, 10); + + const searchBox = document.getElementById("searchbox"); + if (searchBox === null) return; + searchBox.appendChild( + document + .createRange() + .createContextualFragment( + '" + ) + ); + }, + + /** + * helper function to hide the search marks again + */ + hideSearchWords: () => { + document + .querySelectorAll("#searchbox .highlight-link") + .forEach((el) => el.remove()); + document + .querySelectorAll("span.highlighted") + .forEach((el) => el.classList.remove("highlighted")); + localStorage.removeItem("sphinx_highlight_terms") + }, + + initEscapeListener: () => { + // only install a listener if it is really needed + if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return; + + document.addEventListener("keydown", (event) => { + // bail for input elements + if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return; + // bail with special keys + if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return; + if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) { + SphinxHighlight.hideSearchWords(); + event.preventDefault(); + } + }); + }, +}; + +_ready(() => { + /* Do not call highlightSearchWords() when we are on the search page. + * It will highlight words from the *previous* search query. + */ + if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); + SphinxHighlight.initEscapeListener(); +}); diff --git a/v2.6.0/api.html b/v2.6.0/api.html new file mode 100644 index 00000000..3b131ad4 --- /dev/null +++ b/v2.6.0/api.html @@ -0,0 +1,974 @@ + + + + + + + + + Happi API — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Happi API

+
+

Client

+
+
+class happi.Client(database=None, **kwargs)
+

The client to control the contents of the Happi Database.

+
+
Parameters:
+
    +
  • database (happi.backends.Backend) – A already-instantiated backend.

  • +
  • kwargs – Keyword arguments passed to the database backend.

  • +
+
+
Raises:
+

DatabaseError – Raised if the Client fails to instantiate the Database.

+
+
+
+
+add_item(item)
+

Add an item into the database.

+
+
Parameters:
+

item (HappiItem) – The item to store in the database.

+
+
Returns:
+

_id – The id of the item added.

+
+
Return type:
+

str

+
+
Raises:
+

EntryError – If all of the mandatory information for the item has not been + specified or there is already an item with that id in the + database.

+
+
+
+ +
+
+property all_items
+

A list of all contained items.

+
+ +
+
+change_container(item: HappiItem, target: type[HappiItem], edits: dict[str, Any] | None = None, how: str = 'right') dict[str, Any]
+

Return the kwargs necessary to transfer the information from +item into a container target. Checks are performed to ensure +the contents are compatible (following enforce requirements in the +target container)

+

This function is built to be a helper function for an interactive +cli tool, and passes information up accordingly. If keys are not +significantly mismatched, this function can be used as is.

+
+
Parameters:
+
    +
  • item (happi.HappiItem) – HappiItem instance to be transferred to a new container

  • +
  • target (Type[happi.HappiItem]) – Container to contain new item

  • +
  • edits (dict[str, Any], optional) – Dictionary of edits to supersede values in original item

  • +
  • how (str, optional) – Method of resolving the entries between the original item +and target container. Can be: +- “right” : Expect a value for every entry in target container +- “inner” : Expect values for only entries in BOTH original +item and target container

  • +
+
+
Raises:
+

TransferError – If there is a problem tranferring item into container

+
+
Returns:
+

new_kwargs – kwargs to pass into a new HappiItem

+
+
Return type:
+

Dict[str, Any]

+
+
+
+ +
+
+choices_for_field(field)
+

List all choices for a given field.

+
+
Parameters:
+

field (string) – Field name to list all possible choices for +i.e ‘beamline’, ‘name’, ‘z’, ‘prefix’, etc.

+
+
Raises:
+

SearchError – If no items in the database have an entry for the given field.

+
+
Returns:
+

field_choices – List of choices for a given field that are in the database.

+
+
Return type:
+

list

+
+
+
+ +
+
+create_item(item_cls, **kwargs)
+

Instantiate a HappiItem from its container class and keyword arguments.

+
+
Parameters:
+
    +
  • item_cls (type) – The HappiItem container class to instantiate.

  • +
  • **kwargs – Information to pass through to the item, upon initialization.

  • +
+
+
Returns:
+

item – An instantiated version of the item.

+
+
Return type:
+

object

+
+
Raises:
+

TypeError – If the provided class is not a subclass of HappiItem.

+
+
+

Example

+
item = client.create_item(Item, name='my_item' ...)
+item = client.create_item('Item', name='my_item',...)
+
+
+
+ +
+
+export(path=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>, sep='\t', attrs=None)
+

Export the contents of the database into a text file.

+
+
Parameters:
+
    +
  • path (File Handle) – File-like object to save text file. Defaults to stdout.

  • +
  • sep (str) – Separator to place inbetween columns of information.

  • +
  • attrs (iterable) – Attributes to include, these will be a list of values.

  • +
+
+
+
+ +
+
+static find_config()
+

Search for a happi configuration file.

+

We first query the environment variable $HAPPI_CFG to see if this +points to a specific configuration file. If this is not present, the +variable set by $XDG_CONFIG_HOME or if that is not set +~/.config

+
+
Returns:
+

path – Absolute path to configuration file.

+
+
Return type:
+

str

+
+
Raises:
+

EnvironmentError – If no configuration file can be found by the methodology detailed + above.

+
+
+
+ +
+
+find_document(**kwargs)
+

Load an item document from the database.

+

If multiple matches are found, a single document will be returned to +the user. How the database will choose to select this item is based +on each individual implementation

+
+
Parameters:
+

kwargs – Keyword pairs of information used to locate the item

+
+
Returns:
+

document – A dict that matches the specified information.

+
+
Return type:
+

dict

+
+
Raises:
+

SearchError – If no document with the given information is found.

+
+
+
+

See also

+

find_item(), search()

+
+
+ +
+
+find_item(**post)
+

Query the database for an individual HappiItem.

+

If multiple items are found, only the first is returned.

+
+
Parameters:
+

**post – Key-value pairs of search criteria used to find the item.

+
+
Raises:
+

SearchError – If no match for the given information is found.

+
+
Returns:
+

item – A HappiItem instance for the document.

+
+
Return type:
+

HappiItem

+
+
+
+ +
+
+classmethod from_config(cfg=None)
+

Create a client from a configuration file specification.

+

Configuration files looking something along the lines of:

+
[DEFAULT]
+path=path/to/my/db.json
+
+
+

All key value pairs will be passed directly into backend construction +with the exception of the key backend which can be used to specify +a specific type of backend if this differs from the configured default.

+
+
Parameters:
+

cfg (str, optional) – Path to a configuration file. If not entered, find_config() +will be use.

+
+
+
+ +
+
+load_device(use_cache=True, **post)
+

Find an item in the database and instantiate it.

+

Essentially a shortcut for:

+
container = client.find_item(name='...')
+item = from_container(container)
+
+
+
+
Parameters:
+
    +
  • post – Key-value pairs of search criteria passed to +Client.find_item().

  • +
  • use_cache (bool, optional) – Choice to use a cached item. See from_container() for more +information.

  • +
+
+
Returns:
+

Instantiated object.

+
+
Return type:
+

object

+
+
+
+ +
+
+remove_item(item)
+

Remove an item from the database.

+
+
Parameters:
+

item (HappiItem) – HappiItem to be removed from the database.

+
+
+
+ +
+
+retain_cache_context(clear_first: bool = True)
+

Context manager which can be used to retain the happi backend cache.

+
+
Parameters:
+

clear_first (bool, optional) – Clear the cache before entering the block. Defaults to True.

+
+
+
+ +
+
+search(**kwargs)
+

Search the database for item(s).

+
+
Parameters:
+

**kwargs – Information to filter through the database structured as key, value +pairs for the desired pieces of EntryInfo.

+
+
Returns:
+

res – The search results.

+
+
Return type:
+

list of SearchResult

+
+
+

Example

+
gate_valves = client.search(type='Valve')
+hxr_valves  = client.search(type='Valve', beamline='HXR')
+
+
+
+ +
+
+search_range(key: str, start: float, end: float | None = None, **kwargs) list[SearchResult]
+

Search the database for an item or items using a numerical range.

+
+
Parameters:
+
    +
  • key (str) – Database key to search.

  • +
  • start (float, optional) – Minimum beamline position to include items.

  • +
  • end (float, optional) – Maximum beamline position to include items.

  • +
  • **kwargs (optional) – Additional information used to filter through the database +structured as key-value pairs for the desired pieces of EntryInfo.

  • +
+
+
Return type:
+

list of SearchResult

+
+
+

Example

+
gate_valves = client.search_range('z', 0, 100, type='Valve')
+hxr_valves  = client.search_range('z', 0, 100, type='Valve',
+                                  beamline='HXR')
+
+
+
+ +
+
+search_regex(flags=re.IGNORECASE, **kwargs) list[SearchResult]
+

Search the database for items(s).

+
+
Parameters:
+
    +
  • flags (int, optional) – Defaulting to re.IGNORECASE, these flags are used for the +regular expressions passed in.

  • +
  • **kwargs – Information to filter through the database structured as key, value +pairs for the desired pieces of EntryInfo. Every value is allowed +to contain a Python regular expression.

  • +
+
+
Return type:
+

list of SearchResult

+
+
+

Example

+
gate_valves = client.search_regex(beamline='Valve.*')
+three_valves = client.search_regex(_id='VALVE[123]')
+
+
+
+ +
+
+validate()
+

Validate all of the items in the database.

+

This is done by attempting to initialize each item and asserting +their mandatory information is present. Information is written to the +logger.

+
+
Returns:
+

ids – List of item ids that have failed verification.

+
+
Return type:
+

list of str

+
+
+
+ +
+ +
+
+class happi.SearchResult(client, item)
+

A single search result from Client.search.

+

Examples

+

This result can be keyed for metadata as in: +>>> result[‘name’]

+

The HappiItem can be readily retrieved: +>>> result.item

+

Or the object may be instantiated: +>>> result.get()

+
+
+item
+

The resulting container.

+
+
Type:
+

happi.HappiItem

+
+
+
+ +
+
+metadata
+

The resulting HappiItem metadata.

+
+
Type:
+

dict

+
+
+
+ +
+
+get(k[, d]) D[k] if k in D, else d.  d defaults to None.
+
+ +
+ +
+
+

Backends

+
+
+class happi.backends.core._Backend
+

Base class for backend database.

+

Backends are internal to happi and are subject to change. Users should +interact with the happi.Client.

+
+
+property all_items: list[dict[str, Any]]
+

List of all items in the database.

+

This base class _Backend provides no implementation and requires +that a subclass provide its customized implementation.

+
+ +
+
+clear_cache() None
+

Request to clear any cached data.

+

Optional implementation may be customized in subclass.

+
+ +
+
+delete(_id: str) None
+

Delete a device instance from the database.

+

This base class _Backend provides no implementation and requires +that a subclass provide its customized implementation.

+
+
Parameters:
+

_id (str) – ID of device.

+
+
Raises:
+

PermissionError – If the write operation fails due to issues with permissions.

+
+
+
+ +
+
+find(multiples: bool = False, **kwargs) Generator[dict[str, Any], None, None]
+

Find an instance or instances that matches the search criteria.

+

This base class _Backend provides no implementation and requires +that a subclass provide its customized implementation.

+
+
Parameters:
+
    +
  • multiples (bool) – Find a single result or all results matching the provided +information.

  • +
  • kwargs – Requested information.

  • +
+
+
+
+ +
+
+save(_id: str, post: dict[str, Any], insert: bool = True) None
+

Save information to the database.

+

This base class _Backend provides no implementation and requires +that a subclass provide its customized implementation.

+
+
Parameters:
+
    +
  • _id (str) – ID of device.

  • +
  • post (dict) – Information to place in database.

  • +
  • insert (bool, optional) – Whether or not this a new device to the database.

  • +
+
+
Raises:
+
    +
  • DuplicateError – If insert is True, but there is already a device with the + provided _id.

  • +
  • SearchError – If insert is False, but there is no device with the provided + _id.

  • +
  • PermissionError – If the write operation fails due to issues with permissions.

  • +
+
+
+
+ +
+ + + + + + + + + + + + + +

happi.backends.mongo_db.MongoBackend(host, ...)

Abstraction for MongoDB backend.

happi.backends.json_db.JSONBackend(path[, ...])

JSON database.

happi.backends.qs_db.QSBackend(expname, *[, ...])

Questionniare Backend.

+
+
+

Containers

+
+

Built-ins

+
+
+class happi.HappiItem(**kwargs)
+

The smallest description of an object that can be entered in happi.

+

The class does not need to be intialized with any specific piece of +information except a name, but all of the attributes listed by +HappiItem.info_names can be used to assign values to +EntryInfo upon initialization. Pieces of information that are +deemed mandatory by the class must be filled in before the device is loaded +into the database. See mandatory_info to see which +attributes are neccesary.

+

Additional metadata can be given to the device in the form of keywords on +initialization, this information is kept in the extraneous +attribute, and will be saved in to the database as long as it does not +clash with an existing piece of metadata that the client uses to organize +devices.

+
+
+entry_info
+

A list of all the EntryInfo associated with the device.

+
+
Type:
+

list

+
+
+
+ +
+
+extraneous
+

Storage for information supplied during initialization that does not +correspond to a specific EntryInfo.

+
+
Type:
+

dict

+
+
+
+ +
+
Raises:
+
    +
  • EntryError – If a piece of information supplied at startup is of the incorrect type.

  • +
  • ContainerError – If one of the pieces of EntryInfo has a default value of the + incorrect type.

  • +
+
+
+

Example

+
d = HappiItem(name = 'my_device',         # Alias name for device
+              note  = 'Example',          # Piece of arbitrary metadata
+             )
+
+
+
+
+active
+

Whether the instance is actively deployed

+
+ +
+
+args
+

Arguments to pass to device_class

+
+ +
+
+device_class
+

Python class that represents the instance

+
+ +
+
+documentation
+

Relevant documentation for the instance

+
+ +
+
+kwargs
+

Keyword arguments to pass to device_class

+
+ +
+
+name
+

Shorthand Python-valid name for the Python instance

+
+ +
+
+post()
+

Create a document to be loaded into the happi database.

+
+
Returns:
+

post – Dictionary of all contained information.

+
+
Return type:
+

dict

+
+
+
+ +
+
+save()
+

Overwritten when the device instance is loaded from the client.

+
+ +
+
+show_info(handle=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>)
+

Show the device instance information in a PrettyTable.

+
+
Parameters:
+

handle (file-like, optional) – Option to write to a file-like object.

+
+
+
+ +
+ +
+
+class happi.OphydItem(**kwargs)
+
+
+args
+

Arguments to pass to device_class

+
+ +
+
+kwargs
+

Keyword arguments to pass to device_class

+
+ +
+
+prefix
+

A base PV for all related records

+
+ +
+ +
+
+

Loading

+
+
+happi.from_container(item: HappiItem, attach_md: bool = True, run_post_attach_hook: bool = True, use_cache: bool = True, threaded: bool = False) Any
+

Load an object (or “device”) from a compatible HappiItem.

+

The item container is queried for the device_class, args, and +kwargs. If the associated Python module is not already loaded it will +be imported. The specified class is then instantiated with the given args +and kwargs provided.

+

The name device here refers to what is created after instantiating +device_class.

+

This function does not attempt to catch exceptions either during module +imports or object creation. If you would like a series of independent +devices to be loaded use load_devices().

+

By default, the instantiated object has the original container added on as +.md. This allows applications to utilize additional metadata +information that may not be included in the basic class constructor. On +later calls, the container you request is checked against this stored +metadata. If a discrepancy is found the object is forced to reload, not +retrieved from the cache.

+
+
Parameters:
+
    +
  • item (happi.HappiItem) – The item to load.

  • +
  • attach_md (bool, optional) – Attach the container to the instantiated object as md.

  • +
  • run_post_attach_hook (bool, optional) – Run post_happi_md method on the device after attaching the container +if possible.

  • +
  • use_cache (bool, optional) – When devices are loaded they are stored in the happi.cache +dictionary. This means that repeated attempts to load the device will +return the same object. This prevents unnecessary EPICS connections +from being initialized in the same process. If a new object is +needed, set use_cache to False and a new object will be created, +overriding the current cached object. An object with matching name +and differing metadata will always return a new instantiation of the +device.

  • +
  • threaded (bool, optional) – Set this to True when calling inside a thread. This is currently +unused.

  • +
+
+
Returns:
+

obj – This will be of the same type as the return value of the provided +item’s device_class. As that may be a factory function or a +class, the exact return type is not guaranteed.

+
+
Return type:
+

Any

+
+
+
+ +
+
+happi.load_devices(*items: HappiItem, pprint: bool = False, namespace: object | None = None, use_cache: bool = True, threaded: bool = False, post_load: Callable[[Any], None] | None = None, include_load_time: bool = False, load_time_threshold: float = 0.5, **kwargs)
+

Load a series of devices by way of their HappiItems into a namespace.

+
+
Parameters:
+
    +
  • *items (HappiItem) – List of happi containers to load.

  • +
  • pprint (bool, optional) – Print results of device loads.

  • +
  • namespace (object, optional) – Namespace to collect loaded devices in. By default this will be a +types.SimpleNamespace.

  • +
  • use_cache (bool, optional) – If set to False, we’ll ignore the cache and always make new +devices.

  • +
  • threaded (bool, optional) – Set to True to create each device in a background thread. Note that +this assumes that no two devices provided are the same. You are not +guaranteed to load from the cache correctly if you ask for the same +device to be loaded twice in the same threaded load.

  • +
  • post_load (function, optional) – Function of one argument to run on each device after instantiation. +This could be especially useful during the threaded loading process.

  • +
  • include_load_time (bool, optional) – Include load time in each message.

  • +
  • load_time_threshold (float, optional) – Load time above this value, in seconds, will be shown if +include_load_time is set.

  • +
  • kwargs – Additional keyword arguments passed to from_container().

  • +
+
+
+
+ +
+
+

Registry

+
+
+class happi.containers.HappiRegistry(*args, **kwargs)
+

Happi Container Registry singleton.

+

This registry keeps a mapping of full happi container names to their +respective HappiItem subclasses.

+

Entries in the registry are populated in the following order:

+
    +
  1. From the happi.containers.DEFAULT_REGISTRY dictionary. The names +of the containers are assumed to already include any relevant qualifiers +such as package names. That is, the default "OphydItem" will be +used as-is and retrieved from the registry by that name alone.

  2. +
  3. Through Python package-defined entrypoints with the key +happi.containers.

    +

    For example, consider a package named "mypackagename" that defines +the happi container ContainerName inside of the Python module +mypackagename.happi.containers_module.ContainerName. +The fully qualified name - as accessed through the happi client for each +item in the database - may be customized in the entrypoint.

    +

    Here, we want the container to be accessible by way of +"desired_prefix.ContainerName". The following would be how this +entrypoint should be configured in setup.py.

    +
  4. +
+
setup(
+    name="mypackagename",
+    entry_points={
+        "happi.containers": [
+            "desired_prefix=mypackagename.happi.containers_module",
+        ],
+    },
+)
+
+
+

Containers may also be added manually to the registry by way of:

+
import happi
+
+happi.containers.registry[item_name] = ContainerClass
+
+
+
+ +
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/cli.html b/v2.6.0/cli.html new file mode 100644 index 00000000..fa0c4d31 --- /dev/null +++ b/v2.6.0/cli.html @@ -0,0 +1,579 @@ + + + + + + + + + Command Line Interface — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Command Line Interface

+
+

happi

+

The happi command-line interface, used to view and manipulate device databases

+
happi [OPTIONS] COMMAND [ARGS]...
+
+
+

Options

+
+
+--path <path>
+

Provide the path to happi configuration file. Will default to the file stored in the HAPPI_CFG environment variable.

+
+ +
+
+-v, --verbose
+

Show the debug logging stream.

+
+ +
+
+-V, --version
+

Show the version and exit.

+
+ +
+

add

+

Add new entries or copy existing entries.

+
happi add [OPTIONS]
+
+
+

Options

+
+
+--clone <clone>
+

Copy the fields from an existing container. Provide the name of the item to clone.

+
+ +
+
+

audit

+

Audit the current happi database.

+

Runs checks on the devices matching the provided SEARCH_CRITERIA. +Checks are simple functions that raise exceptions on failure, +whether naturally or via assert calls. These functions take a single +happi.SearchResult as an positional argument and returns None if +successful.

+

To import additional checks, provide a file with your check function +and a list named checks containing the desired functions.

+
happi audit [OPTIONS] [SEARCH_CRITERIA]...
+
+
+

Options

+
+
+-f, --file <ext_file>
+

File to import additional checks from.

+
+ +
+
+-l, --list
+

List the available validation checks

+
+ +
+
+-c, --check <check_choices>
+

Name of the check to include. Can also provide a substring

+
+ +
+
+-d, --details <details>
+

Show the details of the specified audit function(s)

+
+ +
+
+--glob, --regex
+

Use glob style (default) or regex style search terms. Regex requires backslashes to be escaped (eg. at\d.\d)

+
+ +
+
+-n, --names
+

Only display names of failed entries

+
+ +
+
+-j, --json
+

output results in json format

+
+ +

Arguments

+
+
+SEARCH_CRITERIA
+

Optional argument(s)

+
+ +
+
+

benchmark

+

Compare happi device startup times.

+

This will generate a table that shows you how long each device took +to instantiate.

+

Repeats for at least the (-d, –duration) arg (default = 0 seconds) +and for at least the number of the (-i, –iterations) arg (default = 1 +iteration), showing stats and averages.

+

By default we time only the duration of __init__, but you can also +(wait_connected) to see the full time until the device is fully ready +to go, presuming the device has a wait_for_connection method.

+

Search terms are standard as in the same search terms as the search +cli function. A blank search term means to load all the devices.

+
happi benchmark [OPTIONS] [SEARCH_CRITERIA]...
+
+
+

Options

+
+
+-d, --duration <duration>
+

Specify how long in seconds to spend per device.

+
+ +
+
+-i, --iterations <iterations>
+

Specify the number of times to instantiate each device.

+
+ +
+
+-w, --wait-connected
+

Wait for the devices to be connected.

+
+ +
+
+-t, --tracebacks
+

Show tracebacks from failing device loads.

+
+ +
+
+-s, --sort-key <sort_key>
+

Sort the output table. Valid options are name, avg_time, iterations, tot_time, max_time, import_time

+
+ +
+
+--glob, --regex
+

Use glob style (default) or regex style search terms. Regex requires backslashes to be escaped (eg. at\d.\d)

+
+ +

Arguments

+
+
+SEARCH_CRITERIA
+

Optional argument(s)

+
+ +
+
+

container-registry

+

Print container registry

+
happi container-registry [OPTIONS]
+
+
+
+
+

copy

+

Copy the item NAME.

+

Simply wraps happi add --clone

+
happi copy [OPTIONS] NAME
+
+
+

Arguments

+
+
+NAME
+

Required argument

+
+ +
+
+

delete

+

Delete an existing entry. Only accepts exact names

+
happi delete [OPTIONS] NAME
+
+
+

Arguments

+
+
+NAME
+

Required argument

+
+ +
+
+

edit

+

Change an existing entry.

+

Applies EDITS of the form: field=value to the item of name NAME.

+
happi edit [OPTIONS] NAME [EDITS]...
+
+
+

Arguments

+
+
+NAME
+

Required argument

+
+ +
+
+EDITS
+

Optional argument(s)

+
+ +
+
+

load

+
happi load [OPTIONS] [SEARCH_CRITERIA]...
+
+
+

Options

+
+
+--glob, --regex
+

use glob style (default) or regex style search terms. Regex requires backslashes to be escaped (eg. at\d.\d)

+
+ +

Arguments

+
+
+SEARCH_CRITERIA
+

Optional argument(s)

+
+ +
+
+

profile

+

Per-function startup speed diagnostic.

+

This will go through the happi loading process and show +information about the execution time of all the +functions called during the process.

+

Contains options for picking which devices to check and which +part of the loading process to profile. You can choose to +profile the happi database loading (-d, –database), the +class imports (-i, –import), the object instantiation +(-o, –object), or all of the above (-a, –all).

+

By default this will use whichever profiler you have installed, +but this can also be overriden with the (-p, –profiler) option. +The priority order is, first, the pcdsutils line_profiler wrapper +(–profiler pcdsutils), and second, the built-in cProfile module +(–profiler cprofile). More options may be added later.

+

Search terms are standard as in the same search terms as the search +cli function. A blank search term means to load all the devices.

+
happi profile [OPTIONS] [SEARCH_CRITERIA]...
+
+
+

Options

+
+
+-d, --database
+

Profile the database loading.

+
+ +
+
+-i, --import
+

Profile the module importing.

+
+ +
+
+-o, --object
+

Profile the object instantiation.

+
+ +
+
+-a, --all
+

Shortcut for enabling all profile stages.

+
+ +
+
+-p, --profiler <profiler>
+

Select which profiler to use.

+
+ +
+
+--glob, --regex
+

Use glob style (default) or regex style search terms. Regex requires backslashes to be escaped (eg. at\d.\d)

+
+ +

Arguments

+
+
+SEARCH_CRITERIA
+

Optional argument(s)

+
+ +
+
+

repair

+

Repair the database.

+

Repairs all entries matching SEARCH_CRITERIA, repairs entire database otherwise.

+

Entries that don’t get any fields changed will not get saved (i.e. their last-edit times will not change).

+
happi repair [OPTIONS] [SEARCH_CRITERIA]...
+
+
+

Options

+
+
+--fix-optional, --ignore-optional
+

Also prompt for user input on optional information

+
+ +
+
+--glob, --regex
+

Use glob (default) or regex style search terms. Only relevant if search_criteria are provided.

+
+ +

Arguments

+
+
+SEARCH_CRITERIA
+

Optional argument(s)

+
+ +
+ +
+

transfer

+

Change the container of an item.

+

Transfers item (NAME) to a new container (TARGET)

+
happi transfer [OPTIONS] NAME TARGET
+
+
+

Arguments

+
+
+NAME
+

Required argument

+
+ +
+
+TARGET
+

Required argument

+
+ +
+
+

update

+

Update happi db with JSON_DATA payload.

+

To use, either use command substitution:

+
+

$ happi update $(cat my.json)

+
+

Or pipe the JSON payload with - as an argument:

+
+

$ cat my.json | happi update -

+
+

JSON payloads should be a list of items (dictionaries), with at least the +“_id” and “type” keys. eg:

+
+
[{
+
+
“_id”: “my_device”,
+
<…>
+
“type”: “mydevicelibrary.MyDevice”
+
+
}]
+
+

Or a valid happi json database. eg:

+
+
{
+
+
“my_device”: {
+
+
“_id”: “my_device”,
+
<…>
+
“type”: “mydevicelibrary.MyDevice”
+
+
}
+
+
}
+
+
happi update [OPTIONS] [JSON_DATA]...
+
+
+

Arguments

+
+
+JSON_DATA
+

Optional argument(s)

+
+ +
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/client.html b/v2.6.0/client.html new file mode 100644 index 00000000..4c4ff543 --- /dev/null +++ b/v2.6.0/client.html @@ -0,0 +1,366 @@ + + + + + + + + + Using the Client — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Using the Client

+

Users will interact with the database by using the happi.Client, this +will handle the authentication, and methods for adding, editing and removing +items.

+

Happi is incredibly flexible, allowing us to put arbitrary key-value pair +information into the database. While this will make adding functionality easy in +the future, it also means that any rules on the structure of the data we allow +will need to be performed by the Client itself. To make this +intuitive, the Client deals primarily with Containers, which are objects +that hold and specify these rules.

+
+

Creating a New Entry

+

A new item must be a subclass of the basic HappiItem container. +While you are free to use the initialized object wherever you see fit, the client +has a hook to create new items.

+

Before we can create our first client, we need to create a backend for our item +information to be stored.

+
In [1]: from happi.backends.json_db import JSONBackend
+
+In [2]: db = JSONBackend(path='doc_test.json', initialize=True)
+
+
+

If you are connecting to an existing database you can pass the information +directly into the Client itself at __init__. See Selecting a Backend +about how to configure your default backend choice.

+
In [3]: from happi import Client, HappiItem
+
+In [4]: client = Client(path='doc_test.json')
+
+In [5]: item = client.create_item(
+   ...:     "HappiItem",
+   ...:     name="my_device",
+   ...:     device_class="types.SimpleNamespace",
+   ...:     args=[],
+   ...:     kwargs={},
+   ...:     position=345.5,   # <- this is an extra field which happi allows
+   ...: )
+   ...: 
+
+In [6]: item
+Out[6]: HappiItem (name=my_device)
+
+In [7]: item.save()
+
+
+

For this example, we have added an “extraneous” field to the item called +“position”. This is something that happi allows for. If you wish to make +this a recognized field of an eforced type (e.g., don’t allow the user to +make position a string value instead of a floating point value), please +see the documentation on making your own container class.

+

Alternatively, you can create the item separately and add it explicitly using +HappiItem.save()

+
In [8]: item = HappiItem(
+   ...:     name="my_device2",
+   ...:     device_class="types.SimpleNamespace",
+   ...:     position=355.5,   # <- this is an extra field which happi allows
+   ...: )
+   ...: 
+
+In [9]: item
+Out[9]: HappiItem (name=my_device2)
+
+In [10]: client.add_item(item)
+Out[10]: 'my_device2'
+
+
+

The main advantage of the first method is that all of the container classes are +already managed by the client so they can be easily accessed with a string. +Keep in mind, that either way, all of the mandatory information needs to be +given to the item before it can be loaded into the database.

+
+
+

Searching the Database

+

There are several ways to load information from the database +Client.find_item(), Client.search(), and dictionary-like access.

+

Client.find_item() is intended to only load one item at at a time. Both +accept criteria in the from of keyword-value pairs to find the item or items +you desire.

+

You can quickly query the client by item name and get a SearchResult that +can be used to introspect metadata or even instantiate the corresponding item +instance.

+
In [11]: result = client["my_device"]
+
+
+

The client acts as a Python mapping, so you may inspect it as you would a +dictionary. For example:

+
# All of the item names:
+In [12]: list(client.keys())
+Out[12]: ['my_device', 'my_device2']
+
+# All of the database entries as SearchResults:
+In [13]: list(client.values())
+Out[13]: 
+[SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 345.5, 'type': 'HappiItem'}),
+ SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device2', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device2', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 355.5, 'type': 'HappiItem'})]
+
+# Pairs of (name, SearchResult):
+In [14]: list(client.items())
+Out[14]: 
+[('my_device',
+  SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 345.5, 'type': 'HappiItem'})),
+ ('my_device2',
+  SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device2', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device2', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 355.5, 'type': 'HappiItem'}))]
+
+
+

You could, for example, grab the first key by name and access it using +__getitem__:

+
In [15]: key_0 = list(client)[0]
+
+In [16]: key_0
+Out[16]: 'my_device'
+
+In [17]: client[key_0]
+Out[17]: SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 345.5, 'type': 'HappiItem'})
+
+
+

Or see how many entries are in the database:

+
In [18]: len(client)
+Out[18]: 2
+
+
+

Here’s a search that gets all the items of type generic HappiItem:

+
In [19]: results = client.search(type="HappiItem")
+
+
+
+

Working with the SearchResult

+

Representing a single search result from Client.search and its variants, a +SearchResult can be used in multiple ways.

+

This result can be keyed for metadata as in:

+
In [20]: result = results[0]
+
+In [21]: result['name']
+Out[21]: 'my_device'
+
+
+

The HappiItem can be readily retrieved:

+
In [22]: result.item
+Out[22]: HappiItem (name=my_device)
+
+In [23]: type(result.item)
+Out[23]: happi.item.HappiItem
+
+
+

Or the object may be instantiated:

+
In [24]: result.get()
+Out[24]: namespace(md=HappiItem (name=my_device))
+
+
+

See that SearchResult.get() returns the class we expect, based on the +device_class.

+
In [25]: result['device_class']
+Out[25]: 'types.SimpleNamespace'
+
+In [26]: type(result.get())
+Out[26]: types.SimpleNamespace
+
+
+

There are also some more advance methods to search specific areas of the +beamline or use programmer-friendly regular expressions, described in the +upcoming sections.

+
+
+

Searching for items on a beamline

+

To search for items on a beamline such as ‘MFX’, one would use the following:

+
In [27]: client.search(type='HappiItem', beamline='MFX')
+Out[27]: []
+
+
+
+
+

Searching a range

+

In this example, we have added an extraneous field position that is not +present normally in the HappiItem container.

+

We can search a range of values with any arbitrary key using +Client.search_range(). For example:

+
In [28]: client.search_range("position", start=314.4, end=348.6)
+Out[28]: [SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 345.5, 'type': 'HappiItem'})]
+
+
+

This would return all items between positions 314.4 and 348.6.

+

Any numeric key can be filtered in the same way, replacing 'position' with +the key name.

+
+
+

Searching with regular expressions

+

Any key can use a regular expression for searching by using Client.search_regex()

+
In [29]: client.search_regex(name='my_device[2345]')
+Out[29]: [SearchResult(client=<happi.client.Client object at 0x7fd4beebc850>, metadata={'name': 'my_device2', 'device_class': 'types.SimpleNamespace', 'args': [], 'kwargs': {}, 'active': True, 'documentation': None, '_id': 'my_device2', 'creation': 'Fri Dec 20 19:42:10 2024', 'last_edit': 'Fri Dec 20 19:42:10 2024', 'position': 355.5, 'type': 'HappiItem'})]
+
+
+
+
+
+

Editing Item Information

+

The workflow for editing an item looks very similar to the code within +Creating a New Entry, but instead of instantiating the item you use either +Client.find_item() or Client.search(). When the item is retrieved +this way the class method HappiItem.save() is overwritten, simply call +this when you are done editing.

+
In [30]: my_motor = client.find_item(name="my_device")
+
+In [31]: my_motor.position = 425.4
+
+In [32]: my_motor.save()
+Out[32]: 'my_device'
+
+
+
+

Note

+

Because the database uses the name key as an item’s identification you +can not edit this information in the same way. Instead you must explicitly +remove the item and then use Client.add_item() to create a new +entry.

+
+

Finally, lets clean up our example objects by using +Client.remove_item() to clean them from the database

+
In [33]: item_1 = client.find_item(name='my_device')
+
+In [34]: item_2 = client.find_item(name='my_device2')
+
+In [35]: for item in (item_1, item_2):
+   ....:     client.remove_item(item)
+   ....: 
+
+
+
+
+

Selecting a Backend

+

Happi supports both JSON and MongoDB backends. You can always import your +chosen backend directly, but in order to save time you can create an +environment variable HAPPI_BACKEND and set this to "mongodb". This well +tell the library to assume you want to use the MongoBackend. +Otherwise, the library uses the JSONBackend.

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/containers.html b/v2.6.0/containers.html new file mode 100644 index 00000000..de3b1ec3 --- /dev/null +++ b/v2.6.0/containers.html @@ -0,0 +1,473 @@ + + + + + + + + + Containers — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Containers

+

In order to regulate and template the information that gets entered into the +Happi database, we use the concept of containers. Containers serve two primary +roles:

+
    +
  • Identifying how to instantiate the object it represents (by way of class +name, arguments, and keyword arguments).

  • +
  • Storing pertinent and structured metadata for the given instance.

  • +
+

Containers are created by instantiating the HappiItem class or a +subclass of it. The metadata associated with the instance is broken up into +fields or “entries” of type EntryInfo. This allows a developer to +specify fields that are essential to every instance of a specific container +type.

+
+

EntryInfo

+

These fields are specified using an instance of EntryInfo. This class +provides several primary features:

+
    +
  • Mark a field as required (or optional)

  • +
  • Add default values when unspecified

  • +
  • Enforce - or validate - a certain format for the field

  • +
+
+
+class happi.EntryInfo(doc: str | None = None, optional: bool | None = True, enforce: Any | None = None, default: Any | None = None, enforce_doc: str | None = None, include_default_as_kwarg: bool = True)
+

A piece of information related to a specific device.

+

These are entered as class attributes for a given device container. They +help control the information entered into a device.

+
+
Parameters:
+
    +
  • doc (str) – A short string to document the device.

  • +
  • optional (bool, optional) – By default all EntryInfo is optional, but in certain cases you may want +to demand a particular piece of information upon initialization.

  • +
  • enforce (type, list, compiled regex, or function, optional) – Specify that all entered information is entered in a specific format. +This can either by a Python type i.e. int, float e.t.c., a list of +acceptable values, a compiled regex pattern i.e re.compile(...), +or custom handling by passing a function that takes in one argument, +the value. This function must do one of: return the value back as-is, +return the value back converted to a corrected form, or raise a +EnforceError.

  • +
  • default (optional) – A default value for the trait to have if the user does not specify. +Keep in mind that this should be the same type as enforce if you +are demanding a certain type.

  • +
  • enforce_doc (str, optional) – A human-readable explanation of the enforce field. Will be printed +if the entered information does not follow the enforce type

  • +
  • include_default_as_kwarg (bool, optional) – Defaults to True. If a kwargs EntryInfo sets this to False, all kwargs +will be compared to their corresponding Entries in the item and +omitted from the kwargs dictionary if their value matches the Entry’s +default. +This can also be set on an individual Entry basis. The setting on +an individual entry will only be taken into consideration if the +kwarg EntryInfo has this set to True (default).

  • +
+
+
Raises:
+

ContainerError – If there is an error with the way the enforced value interacts with its + default value, or if the piece of information entered is unenforcable + based on the the settings.

+
+
+

Example

+
class MyItem(HappiItem):
+    my_field = EntryInfo('My generated field')
+    number   = EntryInfo('Device number', enforce=int, default=0,
+                         enforce_doc='This must be a number')
+
+
+
+
+enforce_value(value)
+

Enforce the rules of the EntryInfo.

+

Accepts a value, verifies that it meets the criteria specified in +the enforce attribute, and returns the same value, except that it +will be converted to the correct type if enforce is a type.

+
+
Raises:
+

EnforceError – If the value is not the correct type, or does not match the + pattern.

+
+
+
+ +
+ +
+
+

HappiItem

+

In order to ensure that information is entered into the database in an +organized fashion, the client will only accept classes that inherit from +HappiItem. Each item will have the key information represented as +class attributes, available to be manipulated like any other regular property

+

Editing the information for a container is a simple as:

+
In [1]: from happi import HappiItem
+
+In [2]: item = HappiItem(name='my_device')
+
+In [3]: item.name = 'new_name'
+
+
+
+

Note

+

happi.Device class is deprecated due to ambiguous name, +conflicting with ophyd.Device. +happi.HappiItem should be used instead.

+
+
+
+

Example Container

+

In order to show the flexibility of the EntryInfo class, we’ll put +together a new example container. The class can be invoked in the same way you +would usually handle class inheritance, the only difference is that you specify +class attributes as EntryInfo objects:

+
In [4]: import re
+
+In [5]: from happi import HappiItem, EntryInfo
+
+In [6]: class MyItem(HappiItem):
+   ...:     """My new item, with a known model number."""
+   ...:     model_no      = EntryInfo('Model Number of Item', optional=False)
+   ...:     count         = EntryInfo('Count of Item', enforce=int, default=0)
+   ...:     choices       = EntryInfo('Choice Info', enforce=['a','b','c'])
+   ...:     no_whitespace = EntryInfo('Enforce no whitespace',
+   ...:                                enforce = re.compile(r'[\S]*$'),
+   ...:                                enforce_doc = 'This item cannot have whitespace')
+   ...: 
+
+
+

By default, EntryInfo will create an optional init keyword argument with a +default of None with the same name as the class attribute. A quick way +to see how this information will be put into the the database is taking a look +at dict(item):

+
In [7]: item = MyItem(name="my_item", model_no="QABC1234")
+
+In [8]: dict(item)
+Out[8]: 
+{'name': 'my_item',
+ 'device_class': None,
+ 'args': [],
+ 'kwargs': {},
+ 'active': True,
+ 'documentation': None,
+ 'model_no': 'QABC1234',
+ 'count': 0,
+ 'choices': None,
+ 'no_whitespace': None}
+
+
+

As shown in the example above, using the EntryInfo keywords, you can put a +short docstring to give a better explanation of the field, and also enforce +that user enter a specific format of information.

+

While the user will always be able to enter None for the attribute, if a +real value is given it will be checked against the specified enforce +keyword, raising ValueError if invalid. Here is a table for how the +EntryInfo check the type

+ + + + + + + + + + + + + + + + + + + + + + + +

Enforce

Method of enforcement

None

Any value will work

type

type(value)

list

list.index(value)

regex

regex.match(value) != None

function

function(value)

+

If your enforce condition is complicated or obfuscated, you can add a +docstring using the enforce_doc keyword that explains the rule. +(This may be helpful for regex matches which are difficult for humans +to read)

+

Fields that are important to the item can be marked as mandatory with +optional=False and should have no default value.

+

When entering information you will not necessarily see a difference between +optional and mandatory EntryInfo, however the database client will +reject the item if these fields do not have the requisite values set.

+
+
+

Loading your Object

+

A container’s primary role is containing the information necessary to load the +Python representation of an object.

+

Internally, happi keeps track of all containers by way of its registry, the +HappiRegistry.

+

This information is stored as a device_class, args and kwargs. The +former stores a string that indicates the Python class of the item, the other +two indicate the information that is needed to instantiate it. With this +information both from_container() and load_device() are able to +handle importing modules and instantiating your object.

+
+

Note

+

happi will attach the original metadata with a fixed attribute name .md +to your object. You can use this to keep track of the container metadata +used to instantiate your object.

+

This can be disabled by setting attach_md to False in +from_container().

+
+

Often, information contained in the args or kwargs will be duplicated +in other parts of the container. For instance, most ophyd objects will want +a name and prefix on initialization. Instead of repeating that +information you can just use a template and have the information automatically +populated for you by the container itself. For instance, in the aforementioned +example, container.args = ["{{name}}"] would substitute the value of +container.name in as an argument. If the template contains the substituted +attribute alone, the type will also be converted.

+
In [9]: from happi import from_container
+
+In [10]: container = MyItem(name="my_item", model_no="QABC1234",
+   ....:                    device_class='ophyd.sim.SynSignal',
+   ....:                    kwargs={'name': '{{name}}'})
+   ....: 
+
+In [11]: obj = from_container(container, attach_md=True)
+
+In [12]: obj
+Out[12]: SynSignal(name='my_item', value=0, timestamp=1734723730.3181584)
+
+
+
+
+

Integrating with your package

+

Happi provides some containers for your convenience, but intentionally does +not support all use cases or control systems in a monolithic fashion.

+

The suggested method for supporting your new package would be to make your +package have a dependency on happi, of course, and subclass HappiItem +to make a new container in your own package.

+

Then, add an +entry point +specified by the happi.containers keyword to your package’s pyproject.toml. +Example entry points can be found here.

+

HappiRegistry takes care of loading the entry points +and making them available throughout the library.

+
+
+

Built-in Container Conventions

+

In order for the database to be as easy to parse as possible we need to +establish conventions on how information is entered. Please read through this +before entering any information into the database.

+
+

HappiItem Entries

+

These are fields that are common to all Happi items.

+
+

name

+

This is simply a short name we can use to refer to the item.

+

device_class

+

This is the full class name, which lets happi know how to instantiate your +item.

+

The device_class name remains for backward-compatibility reasons. Thinking +of it as class_name or creator_callable would be more apt.

+
+

Note

+

This may also be the name of a factory function - happi only cares that +it’s callable.

+
+

args

+

Argument list to be passed on instantiation. May contain templated macros such +as {{name}}.

+

kwargs

+

Keyword argument dictionary to be passed on instantiation. May contain +templated macros such as {{name}}.

+

active

+

Is the object actively deployed?

+

documentation

+

A brief set of information about the object.

+
+
+
+

OphydItem entries

+

ophyd has first-class support in happi - but +not much is required on top of the base HappiItem to support it.

+
+

prefix

+

This should be the prefix for all of the PVs contained within the device. It +does not matter if this is an invalid record by itself.

+
+
+
+

LCLSItem entries

+

This class is now part of pcdsdevices. It remains documented here as +PCDS is the original developer and primary user of happi as of the time of +writing. If you intend to use the same metadata that we do, please copy and +repurpose the LCLSItem class.

+
+

beamline

+

Beamline is required. While it is expected to be one of the following, it +is not enforced:

+
CXI
+HXD
+ICL
+KFE
+LFE
+MEC
+MFX
+PBT
+RIX
+TMO
+TXI
+XCS
+XPP
+
+
+

z

+

Position of the device on the z-axis in the LCLS coordinates.

+

location_group

+

The group of this device in terms of its location. This is primarily +used for LUCID’s grid.

+

functional_group

+

The group of this device in terms of its function. This is primarily +used for LUCID’s grid.

+

stand

+

Acronym for stand, must be three alphanumeric characters like an LCLSI stand +(e.g. DG3) or follow the LCLSII stand naming convention (e.g. L0S04).

+

lightpath

+

If the device should be included in the LCLS Lightpath.

+

embedded_screen

+

Path to an embeddable PyDM control screen for this device.

+

detailed_screen

+

Path to a detailed PyDM control screen for this device.

+

engineering_screen

+

Path to a detailed engineering PyDM control screen for this device.

+
+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/generated/happi.backends.json_db.JSONBackend.html b/v2.6.0/generated/happi.backends.json_db.JSONBackend.html new file mode 100644 index 00000000..a10bd9e9 --- /dev/null +++ b/v2.6.0/generated/happi.backends.json_db.JSONBackend.html @@ -0,0 +1,203 @@ + + + + + + + + + happi.backends.json_db.JSONBackend — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

happi.backends.json_db.JSONBackend

+
+
+class happi.backends.json_db.JSONBackend(path: str, initialize: bool = False, cfg_path: str | None = None)
+

JSON database.

+

The happi information is kept in a single large dictionary that is stored +using the simplejson package.

+
+
Parameters:
+
    +
  • path (str) – Path to JSON file.

  • +
  • initialize (bool, optional) – Initialize a new empty JSON file to begin filling.

  • +
  • cfg_path (str, optional) – Path to the happi config.

  • +
+
+
+
+
+__init__(path: str, initialize: bool = False, cfg_path: str | None = None) None
+
+ +

Methods

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

__init__(path[, initialize, cfg_path])

clear_cache()

Clear the loaded cache.

delete(_id)

Delete an item instance from the database.

find(to_match)

Find an instance or instances that matches the search criteria.

find_range(key, *, start[, stop])

Find an instance or instances that matches the search criteria, such that start <= entry[key] < stop.

find_regex(to_match, *[, flags])

Find an instance or instances that matches the search criteria, using regular expressions.

get_by_id(id_)

Get an item by ID if it exists, or return None.

initialize()

Initialize a new JSON file database.

load()

Load the JSON database.

save(_id, post[, insert])

Save information to the database.

store(db)

Stash the database in the JSON file.

+

Attributes

+ + + + + + +

all_items

All of the items in the database.

+
+ +
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/generated/happi.backends.mongo_db.MongoBackend.html b/v2.6.0/generated/happi.backends.mongo_db.MongoBackend.html new file mode 100644 index 00000000..a5259367 --- /dev/null +++ b/v2.6.0/generated/happi.backends.mongo_db.MongoBackend.html @@ -0,0 +1,199 @@ + + + + + + + + + happi.backends.mongo_db.MongoBackend — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

happi.backends.mongo_db.MongoBackend

+
+
+class happi.backends.mongo_db.MongoBackend(host: str, user: str, pw: str, db: str, collection: str, timeout: str | None = None, port: str | int = 27017, auth_source: str | None = None, **kwargs)
+

Abstraction for MongoDB backend.

+
+
Parameters:
+
    +
  • host (str) – Hostname for MongoDB.

  • +
  • user (str) – Username for MongoDB instance.

  • +
  • pw (str) – Password for given username.

  • +
  • db (str) – Database name within the MongoDB instance.

  • +
  • collection (str) – MongoDB colleciton name

  • +
  • timeout (float, optional) – Time to wait for connection attempt.

  • +
  • port (str or int, optional) – Port of the MongoDB instance. Will be cast to int. Defaults to 27017 +(mongo default) if no value is supplied

  • +
  • auth_source (str, optional) – AuthenticationSource for MongoDB instance, defaults to defaultauthdb if +no value is supplied

  • +
+
+
+
+
+__init__(host: str, user: str, pw: str, db: str, collection: str, timeout: str | None = None, port: str | int = 27017, auth_source: str | None = None, **kwargs) None
+
+ +

Methods

+ + + + + + + + + + + + + + + + + + + + + + + + + + + +

__init__(host, user, pw, db, collection[, ...])

clear_cache()

Request to clear any cached data.

delete(_id)

Delete an item instance from the database.

find(to_match)

Yield all instances that match the given search criteria.

find_range(key, *, start[, stop])

Find an instance or instances that matches the search criteria, such that start <= entry[key] < stop.

find_regex(to_match, *[, flags])

Yield all instances that match the given search criteria.

get_by_id(_id)

Get an item by ID if it exists, or return None.

save(_id, post[, insert])

Save information to the database.

+

Attributes

+ + + + + + +

all_items

List of all item sub-dictionaries.

+
+ +
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/generated/happi.backends.qs_db.QSBackend.html b/v2.6.0/generated/happi.backends.qs_db.QSBackend.html new file mode 100644 index 00000000..b838d7be --- /dev/null +++ b/v2.6.0/generated/happi.backends.qs_db.QSBackend.html @@ -0,0 +1,223 @@ + + + + + + + + + happi.backends.qs_db.QSBackend — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

happi.backends.qs_db.QSBackend

+
+
+class happi.backends.qs_db.QSBackend(expname: str, *, url=None, use_kerberos=True, user=None, pw=None, cfg_path=None)
+

Questionniare Backend.

+

This backend connects to the LCLS questionnaire and looks at items with the +key pattern pcds-{}-setup-{}-{}. These fields are then combined and turned +into proper happi items. The translation of table name to happi.HappiItem +is determined by the translations dictionary. The beamline is +determined by looking where the proposal was submitted.

+

Unlike the other backends, this one is read-only. All changes to the device +information should be done via the web interface. Finally, in order to +avoid duplicating any code needed to search the device database, the +QSBackend inherits directly from JSONBackend. Many of the methods are +unmodified with exception being that this backend merely searches through +an in-memory dictionary whereas the JSONBackend reads from a file before +searches.

+
+
Parameters:
+
    +
  • expname (str) – The experiment name from the elog, e.g. xcslp1915.

  • +
  • url (str, optional) – Provide a base URL for the Questionnaire. If left as None the +appropriate URL will be chosen based on your authentication method.

  • +
  • use_kerberos (bool, optional) – Use a Kerberos ticket to login to the Questionnaire. This is the +default authentication method.

  • +
  • user (str, optional) – A username for ws_auth sign-in. If not provided the current login name +is used.

  • +
  • pw (str, optional) – A password for ws_auth sign-in. If not provided a password will be +requested.

  • +
  • cfg_path (str, optional) – Path to the happi config.

  • +
+
+
+
+
+__init__(expname: str, *, url=None, use_kerberos=True, user=None, pw=None, cfg_path=None)
+
+ +

Methods

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

__init__(expname, *[, url, use_kerberos, ...])

clear_cache()

Clear the loaded cache.

delete(_id)

The current implementation of this backend is read-only.

find(to_match)

Find an instance or instances that matches the search criteria.

find_range(key, *, start[, stop])

Find an instance or instances that matches the search criteria, such that start <= entry[key] < stop.

find_regex(to_match, *[, flags])

Find an instance or instances that matches the search criteria, using regular expressions.

get_by_id(id_)

Get an item by ID if it exists, or return None.

initialize()

Can not initialize a new Questionnaire entry from API.

load()

Return the structured dictionary of information.

save(*args, **kwargs)

The current implementation of this backend is read-only.

store(*args, **kwargs)

The current implementation of this backend is read-only.

+

Attributes

+ + + + + + + + + +

all_items

All of the items in the database.

translations

+
+ +
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/genindex.html b/v2.6.0/genindex.html new file mode 100644 index 00000000..5078e68b --- /dev/null +++ b/v2.6.0/genindex.html @@ -0,0 +1,986 @@ + + + + + + + + Index — Happi 2.6.0 documentation + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
  • +
  • +
+
+
+
+
+ + +

Index

+ +
+ Symbols + | _ + | A + | C + | D + | E + | F + | G + | H + | I + | J + | K + | L + | M + | N + | O + | P + | Q + | R + | S + | T + | V + +
+

Symbols

+ + + +
+ +

_

+ + + +
+ +

A

+ + + +
+ +

C

+ + + +
+ +

D

+ + + +
+ +

E

+ + + +
+ +

F

+ + + +
+ +

G

+ + +
+ +

H

+ + + +
+ +

I

+ + +
+ +

J

+ + + +
+ +

K

+ + +
+ +

L

+ + + +
+ +

M

+ + + +
+ +

N

+ + + +
+ +

O

+ + +
+ +

P

+ + + +
+ +

Q

+ + +
+ +

R

+ + + +
+ +

S

+ + + +
+ +

T

+ + +
+ +

V

+ + +
+ + + +
+
+
+ +
+ +
+

© Copyright 2021, SLAC National Accelerator Laboratory.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/index.html b/v2.6.0/index.html new file mode 100644 index 00000000..da4a2b95 --- /dev/null +++ b/v2.6.0/index.html @@ -0,0 +1,276 @@ + + + + + + + + + HAPPI - Heuristic Access to Positions of Photon Instruments — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
  • + View page source +
  • +
+
+
+
+
+ +
+

HAPPI - Heuristic Access to Positions of Photon Instruments

+
+

Background

+

Happi is a database-backed library that was originally created to hold +information about devices along SLAC’s Linac Coherent Light Source beamline. +Though initially purpose-built, happi provides a framework for general indexing +of devices or things that correspond to Python objects.

+

Happi will help you create and index your objects, search through them, and +provide relevant metadata based on the object type.

+
+
+

Terminology Summary

+
    +
  • The happi client communicates with pre-configured database using an internal +“backend”. Supported backends include JSON (with a file on disk) and MongoDB +currently.

  • +
  • A HappiItem container class describes metadata about a Python object and +information on how to instantiate it.

  • +
  • HappiItem may be customized for your own purposes through subclassing.

  • +
  • Container classes have entries - marked by EntryInfo instances - that +define the top-level keys and values of the item.

  • +
  • The basic HappiItem has entries that tell happi how to import and +instantiate a specific Python object. The fields required for this are +device_class, args, and kwargs. In short, the effect of loading +this device would be to import device_class and instantiate it by way of +device_class(*args, **kwargs).

  • +
  • This resulting object is also referred to as a Device, borrowing the name +from the library ophyd.

  • +
+
+
+ + +
+
+ + +
+
+
+ +
+ +
+

© Copyright 2021, SLAC National Accelerator Laboratory.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/v2.6.0/objects.inv b/v2.6.0/objects.inv new file mode 100644 index 00000000..2f7b72b3 Binary files /dev/null and b/v2.6.0/objects.inv differ diff --git a/v2.6.0/releases.html b/v2.6.0/releases.html new file mode 100644 index 00000000..6731e869 --- /dev/null +++ b/v2.6.0/releases.html @@ -0,0 +1,1313 @@ + + + + + + + + + Release History — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Release History

+
+

v2.6.0 (2024-12-19)

+
+

Features

+
    +
  • Updated happi load to support searching and loading in one user-friendly expression. The load function now gathers the results of each search term individually and loads the union of the results.

  • +
+
+
+

Maintenance

+
    +
  • Make running happi repair only saves an item if it actually got changed during the repair process

  • +
  • Fixes issue in test suite, making tst_base_pim2 a loadable SimpleNamespacce

  • +
  • Add example .cfg and some more instructions on using happi cli

  • +
  • Make pre-release notes script default to just using vi if EDITOR env var is not set.

  • +
  • Fix a few dead links in the docs, add to contributing doc to make 1st time dev instructions bit more clear

  • +
+
+
+

Contributors

+
    +
  • janeliu-slac

  • +
  • nstelter-slac

  • +
  • tangkong

  • +
+
+
+
+

v2.5.0 (2023-12-19)

+
+

Features

+
    +
  • Adds more user-friendly qt search widget

  • +
+
+
+

Bugfixes

+
    +
  • Fixes audit output table, preventing names from being dropped

  • +
+
+
+

Maintenance

+
    +
  • Adjusts cli audit output to work better for file redirects

  • +
  • Fix conda recipe to use “run_constrained” not “run-constrained”

  • +
+
+
+

Contributors

+
    +
  • tangkong

  • +
  • klauer

  • +
+
+
+
+

v2.4.0 (2023-09-27)

+
+

Features

+
    +
  • Added happi.audit.audit() which can be used to programmatically audit +happi items.

  • +
+
+
+

Bugfixes

+
    +
  • Fixes bug where happi transfer was not filling default values properly

  • +
  • Fixes conftest.trim_split_output, which was effectively a no-op. Touches up affected tests

  • +
  • Issue 302: Add functionality to happi ‘repair’ that ensures that the name and id fields of a device are the same.

  • +
  • Removes an extra pcdsutils import from test_cli.py that is not properly caught by error handling

  • +
+
+
+

Maintenance

+
    +
  • Adds error handling for the temporary file created when initializing a json backend object.

  • +
  • Changes format of temporary file name generation to contain only a unique hash.

  • +
  • Tests modified to no longer assert stdout matches expected strings. Rather the effect of the +command being tested is verified independently. The assert_match_expected helper is still +used, but will now print mismatches instead of asserting them.

  • +
  • Allows happi update to handle json-backend-type payloads

  • +
  • Adds pcdsutils and pcdsdevices to environment requirements in conda recipe and dev requirements

  • +
  • Removes pcdsutils and pcdsdevices from extra testing requirements in github workflow

  • +
  • The happi audit CLI entrypoint has been modified to use +happi.audit.audit().

  • +
  • Updates mongo backend to handle authSource, require connection information (host, user, etc)

  • +
  • Documents bson dependency. Bson is vendored by pymongo, which instructs +users to not install bson from pypi (pymongo readme)

  • +
+
+
+

Contributors

+
    +
  • klauer

  • +
  • laura-king

  • +
  • tangkong

  • +
+
+
+
+

v2.3.0 (2023-06-30)

+
+

Features

+
    +
  • CLI command happi config edit - open config file in $EDITOR

  • +
  • CLI command happi config init - create new config file with default options

  • +
  • CLI command happi config show - show location & contents of config file

  • +
  • Extend the config searching mechanism to check the platformdirs config directory. +The happi config file path is taken from the HAPPI_CFG environment variable, +but if the variable is not set then the following locations are searched in order +for files named .happi.cfg or happi.cfg:

    +
      +
    • The location specified by the XDG_CONFIG_HOME environment variable

    • +
    • ~/.config

    • +
    • (new) The location specified by platformdirs.user_config_dir("happi")

    • +
    +
  • +
+
+
+

Maintenance

+
    +
  • Add dependency on platformdirs.

  • +
  • Update build requirements to use pip-provided extras for documentation and test builds

  • +
+
+
+

Contributors

+
    +
  • tangkong

  • +
  • untzag

  • +
+
+
+
+

v2.2.0 (2023-05-08)

+
+

Features

+
    +
  • Adds a hook in happi.loader.from_container that runs the method +post_happi_md on an instantiated object after the metadata +container has been attached. +This allows a clear method for objects to interact with +happi metadata if desired.

  • +
+
+
+

Maintenance

+
    +
  • Makes HappiDeviceTreeView more tolerant of items with missing metadata keys. +Items missing the key used to group the tree view will be organized +into a catch-all “[KEY NOT FOUND]” group.

  • +
+
+
+

Contributors

+
    +
  • tangkong

  • +
+
+
+
+

v2.1.0 (2023-04-03)

+
+

Features

+
    +
  • Adds happi repair command, for synchronizing backend database with fields expected by container. +Adds a corresponding audit function.

  • +
  • Adds audit functions that check the connection status of all signals in an +ophyd device (check_wait_connection) and verify any fields requested by +args/kwargs exist in the database (check_args_kwargs_match).

  • +
  • Adds happi audit -d/--details option to print the source of a requested +audit function.

  • +
  • Adds the happi delete CLI tool for deleting entries from the happi database.

  • +
+
+
+

Bugfixes

+
    +
  • Fix an issue where an ill-timed interrupt of the json backend’s +store operation could truncate the data file. This also removes +the implicit/optional dependency on fcntl.

  • +
+
+
+

Maintenance

+
    +
  • Migrates from Travis CI to GitHub Actions for continuous integration testing, and documentation deployment.

  • +
  • Updates happi to use setuptools-scm, replacing versioneer, as its version-string management tool of choice.

  • +
  • Syntax has been updated to Python 3.9+ via pyupgrade.

  • +
  • happi has migrated to modern pyproject.toml, replacing setup.py.

  • +
  • Sphinx 6.0 now supported for documentation building.

  • +
+
+
+

Contributors

+
    +
  • tangkong

  • +
  • zllentz

  • +
+
+
+
+

v2.0.0 (2022-10-20)

+
+

API Changes

+
    +
  • Removed deprecated happi.containers.Device container.

  • +
  • +
    Removed deprecated methods:
      +
    • happi.Client.create_device

    • +
    • happi.Client.add_device

    • +
    • happi.Client.find_device

    • +
    • happi.Client.all_devices

    • +
    • happi.Client.remove_device

    • +
    • happi.SearchResult.device

    • +
    +
    +
    +
  • +
+
+
+

Features

+
    +
  • Added EntryInfo keyword argument include_default_as_kwarg. If set to False, +any keys that are included in an item’s kwargs that match the default of their +corresponding EntryInfo will be omitted from the keyword arguments passed to +device_class when instantiating (loading) the item as in happi.loader.load_device or +SearchResult.get(). +If the kwargs EntryInfo sets include_default_as_kwarg = True, +the setting on the corresponding EntryInfo will be used to decide +whether or not to omit a keyword argument. +If the kwargs EntryInfo sets include_default_as_kwarg = False, +the setting on corresponding EntryInfo will be ignored. +The default value is True on all EntryInfo instances, retaining the original behavior.

  • +
  • For happi load, fall back to Python REPL if IPython is not available.

  • +
  • Added MultiBackend, which allows a happi Client to serve information +from multiple databases simultaneously. Updates config parsing logic +to match.

  • +
  • Added happi audit function for running checks on happi database items.

  • +
  • Restored –json option for happi search.

  • +
+
+
+

Bugfixes

+
    +
  • Removed extraneous extraneous print in happi load.

  • +
  • Calculate a max width for shown tables based on the current terminal size +to prevent bad line wrapping.

  • +
+
+
+

Maintenance

+
    +
  • Prevent ophyd / pyepics teardown during test suite.

  • +
  • Improved error logging in happi CLI to be more consistent.

  • +
+
+
+

Contributors

+
    +
  • JJL772

  • +
  • klauer

  • +
  • tangkong

  • +
+
+
+
+

v1.14.0 (2022-07-06)

+
+

API Changes

+
    +
  • Added happi.Client.create_item and deprecated +happi.Client.create_device.

  • +
  • Added happi.Client.add_item and deprecated happi.Client.add_device.

  • +
  • Added happi.Client.find_item and deprecated happi.Client.find_device.

  • +
  • Added happi.Client.all_items and deprecated happi.Client.all_devices.

  • +
  • Added happi.Client.remove_item and deprecated +happi.Client.remove_device.

  • +
  • Deprecated happi.SearchResult.device and above deprecated items are now +scheduled for removal in the next major happi release.

  • +
  • Internal backend API all_devices has been changed to all_items.

  • +
  • Added happi.Client.retain_cache_context for clients that desire to +control when reloading the database from a happi backend happens.

  • +
  • Backend implementations may now optionally support a caching mechanism with +clear_cache being called externally by the client when desirable.

  • +
  • The happi container registry now supports adding new container classes +manually by way of +happi.containers.registry["ContainerName"] = ContainerClass.

  • +
+
+
+

Features

+
    +
  • Significant performance increase for JSON-backed happi clients.

  • +
  • Makes SearchResult hashable

  • +
  • Uses hashable SearchResult in happi search cli command

  • +
  • JSON database paths may now be relative to the configuration file.

  • +
  • Added happi benchmark for identifying which items are slow to load.

  • +
  • Added happi profile for identifying why particular items are slow to load.

  • +
+
+
+

Bugfixes

+
    +
  • Fix a rare race condition related to reading a json device database +twice in a command line search command between database updates.

  • +
  • Issue where happi Client would repeatedly (and unnecessarily) make database +backend calls has been fixed.

  • +
  • Allow int search values to match their float counterparts

  • +
  • The happi container registry is loaded at first use and not on import. This +can result in increased performance where the happi database is not used. +It also fixes a scenario in which a module that defines a happi container +attempts to import certain classes from happi.

  • +
+
+
+

Maintenance

+
    +
  • Old terminology for HappiItem instances has been scrubbed and clarified +in documentation.

  • +
  • Test suite and documentation has been updated to reflect trajectory of +deprecated methods and naming.

  • +
  • Added relaxed flake8 configuration.

  • +
  • Remove happi.device.Device from tests to avoid deprecation warnings

  • +
  • Add type annotations to test suite

  • +
  • Clean up fixture usage and separate three_valves fixture into three_valves and client_with_three_valves

  • +
  • add pre-release notes scripts

  • +
  • More documentation about the happi container registry was added.

  • +
  • Refactored CLI slightly to re-use searching logic.

  • +
+
+
+

Contributors

+
    +
  • JJL772

  • +
  • klauer

  • +
  • tangkong

  • +
  • zllentz

  • +
+
+
+
+

v1.13.0 (2022-06-03)

+
+

Features

+
    +
  • Added the enforce_doc argument to EntryInfo. This lets us explain +what the entry info represents and how it is meant to be filled out +in more explicit words when it would be helpful to do.

  • +
  • Added methods to client and cli entry points for changing the container +of a happi item. This will walk the user through the process of +switching to or between custom containers while making sure we adhere +to the defined EntryInfo. Check out happi transfer --help for +command-line usage or Client.change_container for library usage.

  • +
  • Added the option to pick between glob and regex searching from the CLI, +rather than only allowing glob as in the past. +Give happi search --regex a try and check out happi search --help +for more information.

  • +
+
+
+

Fixes

+
    +
  • Fixed an issue where it was previously impossible to input dictionary +and list fields using the CLI.

  • +
  • Fixed handling of numeric values in happi search.

  • +
  • Fixed range searching logic for multiple range searches in one query.

  • +
  • Fixed the ambiguity between a search returning no results (exit code 0) +and a search being malformed (exit code 1).

  • +
+
+
+

Maintenance

+
    +
  • Refactored the CLI to use click instead of bare argparse. +This implementation is much cleaner and will lead to more advanced +CLI features in the future.

  • +
  • psdm_qs_cli and pymongo are no longer required dependencies of +happi. These have been reclassified into the run_constrained +portion of the conda recipe bundled in this repository and will also +be adjusted on conda-forge.

  • +
  • Improved usage and cleanup of temporary files when running the happi +test suite.

  • +
  • Restored the automatic documention uploads.

  • +
  • Added/modified test cases to better cover search behavior.

  • +
+
+
+

Contributors

+
    +
  • tangkong

  • +
+
+
+
+

v1.12.0 (2022-03-31)

+
+

Features

+
    +
  • Add optional per-device load timers to help identify slow-loading devices.

  • +
+
+
+

Fixes

+
    +
  • Fixed an issue where missing keys could cause a find match to fail.

  • +
  • Switch on-import fcntl warning to debug to reduce spam.

  • +
+
+
+

Contributors

+
    +
  • klauer

  • +
+
+
+
+

v1.11.0 (2022-02-07)

+
+

Features

+
    +
  • Add --names flag to the happi search command. This causes the +search to output only the names of the matching devices. This is useful +for using the output of happi search inside another happi command, +for example: happi load $(happi search "*" --names).

  • +
+
+
+

Contributors

+
    +
  • unztag

  • +
+
+
+
+

v1.10.1 (2021-11-15)

+
+

Bugfixes

+
    +
  • Fix a logging format error in Client.from_config

  • +
+
+
+

Contributors

+
    +
  • klauer

  • +
+
+
+
+

v1.10.0 (2021-09-27)

+
+

Features

+
    +
  • Add happi container-registry command-line utility. This shows the user +which happi containers are registered and available in their session. +This is very useful for debugging purposes and more generally to +understand which containers are available.

  • +
+
+
+

Maintenance

+
    +
  • Fix error in the docs build.

  • +
  • Misc updates to the CI.

  • +
+
+
+

Contributors

+
    +
  • unztag

  • +
  • zrylettc

  • +
+
+
+
+

v1.9.0 (2021-02-10)

+
+

Features

+
    +
  • Add happi update <json> command-line utility. This allows the user to +pipe in a json blob to the happi CLI to update their database. This enables +bulk updates in a convenient way.

  • +
  • Allow short (under 3) and long (over 80) character names. Users who want +further restrictions on names for their projects are encouraged to create +a custom container.

  • +
  • Allow arbitrary user functions to be passed in to the EntryInfo enforce +field, for custom validation of data. These functions should mimic the +signature and behavior of the built-in types: take one argument, return the +value back as-is or cast to the type, raise ValueError if there is an issue.

  • +
+
+
+

Bugfixes

+
    +
  • Properly expand home directory (~) in the JSON backend database path.

  • +
  • Require that the name field does not conflict with reserved Python keywords.

  • +
  • Fix an issue where boolean fields edited from the command-line were always +interpreted as True.

  • +
+
+
+

Maintenance

+
    +
  • Update CI to PCDS standards.

  • +
+
+
+

Contributors

+
    +
  • klauer

  • +
  • unztag

  • +
  • zllentz

  • +
+
+
+
+

v1.8.4 (2021-01-08)

+
+

Bugfixes

+
    +
  • Fix an issue where a package implementing a happi containers entrypoint +could fail to be picked up by the happi registry based on the import order.

  • +
+
+
+

Maintenance

+
    +
  • Revisions, clarifications, and additions to the documentation.

  • +
  • Docstring style fixes.

  • +
+
+
+

Contributors

+
    +
  • klauer

  • +
  • untzag

  • +
  • zrylettc

  • +
+
+
+
+

v1.8.3 (2020-11-17)

+
+

Bugfixes

+
    +
  • Fix loading of acromag io channels from the lcls questionnaire. +Previously, these were loading full acromag devices instead of +individual channels and were using the incorrect PVs.

  • +
  • Fix loading of Beckhoff axis motors from the lcls questionnaire. +Previously, these were misidentified as IMS motors.

  • +
+
+
+

Maintenance

+
    +
  • Refactor questionnaire entry creation to accomplish the above.

  • +
+
+
+

Contributors

+
    +
  • cristinasewell

  • +
+
+
+
+

v1.8.2 (2020-10-20)

+
+

Bugfixes

+
    +
  • Removed hanging raise command from qs loader (hotfix)

  • +
+
+
+
+

v1.8.1 (2020-10-21)

+
+

Bugfixes

+
    +
  • Fix various issues causing questionnaire loads to fail.

  • +
  • Fix clarity issues for failed questionnaire loads.

  • +
+
+
+

Maintenance

+
    +
  • Break up the questionnaire loading routines into more maintainable +chunks, reorganizing and cleaning up the code.

  • +
  • Allow introspection of questionnaire state for debugging.

  • +
+
+
+
+

v1.8.0 (2020-10-07)

+
+

Features

+
    +
  • Adds bash/fzf-based fuzzy finding of happi items with corresponding +activate/deactivate scripts.

  • +
  • Adds happi search --json option to output JSON instead of a table.

  • +
+
+
+

Maintenance

+
    +
  • Move IPython import to where it’s needed in happi load, saving +approximately half a second on any other happi CLI invocation.

  • +
+
+
+
+

v1.7.2 (2020-09-17)

+
+

Bugfixes

+
    +
  • Fix issue with edge cases in lcls questionnaire loader

  • +
  • Fix issue with unclear warnings on creating malformed entries

  • +
+
+
+

Maintenance

+
    +
  • Improve testing coverage for CLI functions

  • +
+
+
+
+

v1.7.1 (2020-08-20)

+
+

Bugfixes

+
    +
  • Fix cli issue where the --clone argument would fail.

  • +
  • Make sure the happi cli returns usage information +if the user passes no arguments.

  • +
+
+
+
+

v1.7.0 (2020-08-18)

+
+

Features

+
    +
  • Add cli search globbing, e.g. now the following will work: +happi search xpp* (show all devices whose names start with xpp)

  • +
+
+
+

Bugfixes

+
    +
  • Fix issue with silent failure when editing a non-existent field.

  • +
  • Fix issues related to changing an entry’s name field.

  • +
+
+
+

Maintenance

+
    +
  • Add documentation for the happi cli

  • +
  • Update the db.json examples to use OphydItem

  • +
+
+
+
+

v1.6.1 (2020-07-01)

+
+

Bugfixes

+
    +
  • Do not raise an exception on single malformed entries uncovered during +a search. Treat these as missing entries. This was causing an issue +where queries like all_devices would fail outright.

  • +
  • Fix issue where device_cls string would leak through and raise a +bad/confusing exception during create_device

  • +
+
+
+

Maintenance

+
    +
  • Reduce missing backends log messages from warning to debug.

  • +
  • Fix docs failing to build and related issues.

  • +
  • Add requirements.txt file to MANIFEST.in.

  • +
+
+
+
+

v1.6.0 (2020-04-30)

+
    +
  • LCLS-specific containers are moved out of happi, and into +pcdsdevices

  • +
  • OphydItem is now the preferred basic ophyd.Device +container, with the intention of fully deprecating Device to +avoid naming confusion

  • +
  • Minor internal fixes

  • +
+
+
+

v1.5.0 (2020-04-06)

+
    +
  • Refactor search methods, supporting mongo and JSON backends

    +
      +
    • search - search by key/value pairs as kwargs

    • +
    • search_range - search for a range of values in a specific key

    • +
    • search_regex - search for key/value pairs as kwargs, with +values being regular expressions

    • +
    • Adds SearchResult container, allowing for access of metadata +or device instantiation

    • +
    +
  • +
  • Client['item'] supported

  • +
  • happi.Device is now marked as deprecated

    +
      +
    • Migrate to happi.OphydItem

    • +
    +
  • +
  • Documentation building fixed and made more accurate

  • +
  • Internal refactoring

    +
      +
    • Reduce usage of metaclasses

    • +
    • pymongo/mongomock are truly optional test dependencies now

    • +
    • Added pre-commit configuration for developer quality-of-life

    • +
    • HappiItems are now copy.copy()-able

    • +
    • Backends supply generators and not lists

    • +
    +
  • +
  • Fixed many oustanding issues with the JSON backend

  • +
+
+
+

v1.4.0 (2020-03-13)

+
+

Enhancements

+
    +
  • Add an add command for cli, e.g. happi add to start an interactive +device adder

  • +
  • Add an edit command for cli, e.g. happi edit im3l0 location=750 +prefix=IM3L0:PPM

  • +
  • Change search command syntax to be simpler (more like edit)

  • +
  • Add a load command for cli, e.g. happi load im3l0 im1l1 -> IPython +session plus other changes made in dev to get it working

  • +
  • Add two new Happi-aware Qt widgets: HappiDeviceListView & +HappiDeviceTreeView

  • +
+
+
+

Bug Fixes

+
    +
  • Initialize database if it does not yet exists

  • +
  • Fix broken tests

  • +
+
+
+
+

v1.3.0 (2019-12-10)

+
+

Enhancements

+
    +
  • Command line script allow users to search and add devices +#84

  • +
  • Base Container object now available with minimum amount of +EntryInfo #92

  • +
  • Allow Happi to load more devices from LCLS questionnaire +#94

  • +
  • New function list_choices added to happi.Client to allow user +to know what beamlines, prefixes, names, etc. will return results.

  • +
  • Threaded load_devices with option to specify a callback when +devices are ready +#67

  • +
+
+
+
+

v1.2.1 (2019-03-07)

+
+

Bug Fixes

+
    +
  • The test suite now passes without the mongomock backend +(#89)

  • +
  • Ensure our file handles are properly closed in the JSON backend by +using context managers +(#87)

  • +
+
+
+
+

v1.2.0 (2018-12-19)

+
+

Enhancements

+
    +
  • Client now has a method load_device for searching the +database for a Container and then loading the corresponding +object based on device_class, args and kwargs. This is a +shortcut to combine two previously existing features +Client.find_device and happi.loader.from_container

  • +
  • Client.from_config will create a Client object from a +provided configuration file. You can either pass this file in +explicitly, specify it via the the environment variable +$HAPPI_CFG, or it will be searched for in ~config or wherever +you specify your `$XDG_CONFIG_HOME environment variable

  • +
  • Additional keywords were added to the base Device container; +lightpath, documentation and embedded_screen, +detailed_screen and engineering_screen

  • +
  • There is now a base container for a Motor object.

  • +
+
+
+

Deprecations

+
    +
  • screen is longer a supported key. This was too generic and the +three keys detailed above allow the user more specificity.

  • +
+
+
+

Fixes

+
    +
  • The JSONBackend no longer relies on fcntl a Linux only module +of the Python standard library.

  • +
+
+
+
+

v1.1.2 (2018-08-30)

+
+

Maintenance

+
    +
  • In from_container, the provided container is compared against the +cached version of the device to find discrepancies. This means that +modified container objects will always load a new Device. +(#62)

  • +
  • The QSBackend uses newer methods available in the psdm_qs_cli to +determine the proposal from the experiment name. This is more robust +against exotic experiment naming schemas than prior implementations +(#68)

  • +
+
+
+
+

v1.1.1 (2018-03-08)

+
+

Enhancements

+
    +
  • The QSBackend guesses which a type of motor based on the +prefix. Currently this supports Newport, IMS, and +PMC100 motors. While there is not an explicit dependency, this +will require pcdsdevices >= 0.5.0 to load properly +(#51)

  • +
+
+
+

Bug Fixes

+
    +
  • Templating is more robust when dealing with types. This includes a +fatal case where the default for an EntryInfo is None +(#50)

  • +
  • A proper error message is returned if an entry in the table does not +have the requisite information to load +(#53 )

  • +
+
+
+
+

v1.1.0 (2018-02-13)

+

Ownership of this repository has been transferred to +https://github.com/pcdshub

+
+

Enhancements

+

Happi now has a cache so the repeated requests to load the same device +do not spawn multiple objects.

+
+
+

Maintenance

+
    +
  • Cleaner logging messages

  • +
  • QSBackend was expanded to accommodate different keyword arguments +associated with different authentication methods.

  • +
+
+
+
+

v1.0.0 (2018-01-31)

+
+

Enhancements

+
    +
  • happi now handles loading devices with the built-in EntryInfo +-> args, kwargs and device_class. Simply enter the proper information +in these fields, either directly inputting information or using +jinja2 templating. The functions from_container and +load_devices will then handle the necessary imports and +initialize devices for you

  • +
  • Select which backend you want to use with the environment variable +$HAPPI_BACKEND

  • +
  • Backend to read from the PCDS Questionnaire

  • +
  • All containers work out of the box with pcdsdevices >= 0.3.0 ## +API

  • +
  • All backends are stored in the backends directory.

  • +
  • The default plugin is now considered to be JSONBackend

  • +
  • The function formerly called load_device is now find_device.

  • +
+
+
+

Build

+
    +
  • jinja2 is now a dependency

  • +
  • psdm_qs_cli is now an optional dependency if you want to use the +Questionnaire backend

  • +
  • pymongo is now an optional dependency if you do not want to use +the MongoDB backend

  • +
  • Only tested against Python 3.5.x and 3.6.x

  • +
  • Sent to the pcds-tag and pcds-dev Anaconda channels instead +of the skywalker channels

  • +
+
+
+
+

v0.5.0 (2017-11-11)

+
+

Enhancements

+
    +
  • happi now supports multiple backends. The required database +operations are templated in the happi.backends.Backend The +existing mongoDB support was kept as the default, but the an +additional JSON backend was added. The choice of database type can be +entered as an argument to the happi.Client

  • +
  • Conda builds of happi are now available at skywalker-tag and +skywalker-dev

  • +
+
+
+

Bug Fixes

+
    +
  • Devices comparison now works properly. The listed prefix and names +are compared.

  • +
+
+
+

API Changes

+
    +
  • Mirror container has been changed to the more specific name +OffsetMirror

  • +
+
+
+

Deprecations

+
    +
  • happi will no longer support Python 2.7

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+

v0.4.0 (2017-04-04)

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Bug Fixes

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    +
  • Removed dependency on mongomock in conda-recipe

  • +
  • MockClient creates entire device_types container mapping

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API Changes

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  • Renamed alias -> name, and base -> prefix for Ophyd compatibility

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v0.3.0 (2017-03-22)

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Enhancements

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    +
  • Added Python 2.7 support

  • +
  • Added macros keyword for EDM support

  • +
  • Added CI tools for Travis, Codecov

  • +
  • Changed tests to use a mongomock.MockClient instead of an actual +mongoDB instance

  • +
  • Device can now show_info and print a table output of all entered +information

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Bug Fixes

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    +
  • active EntryInfo should default to True

  • +
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API Changes

+
    +
  • Moved the tests directory into the package to make it easily +importable by other modules hoping to use a MockClient

  • +
  • Introduced explicit dependencies on six, mongomock, and +prettytable

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+ + + + \ No newline at end of file diff --git a/v2.6.0/search.html b/v2.6.0/search.html new file mode 100644 index 00000000..9e51722d --- /dev/null +++ b/v2.6.0/search.html @@ -0,0 +1,131 @@ + + + + + + + + Search — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + + + +
+ + +
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  • + +
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© Copyright 2021, SLAC National Accelerator Laboratory.

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+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
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+ + + + + + + + + \ No newline at end of file diff --git a/v2.6.0/searchindex.js b/v2.6.0/searchindex.js new file mode 100644 index 00000000..420252c8 --- /dev/null +++ b/v2.6.0/searchindex.js @@ -0,0 +1 @@ +Search.setIndex({"alltitles": {"API Changes": [[8, "api-changes"], [8, "id22"], [8, "id75"], [8, "id78"], [8, "id81"]], "API Documentation": [[7, null]], "Backends": [[0, "backends"]], "Background": [[7, "background"]], "Bug Fixes": [[8, "bug-fixes"], [8, "id64"], [8, "id69"], [8, "id74"], [8, "id77"], [8, "id80"]], "Bugfixes": [[8, "bugfixes"], [8, "id5"], [8, "id15"], [8, "id19"], [8, "id24"], [8, "id35"], [8, "id41"], [8, "id44"], [8, "id47"], [8, "id50"], [8, "id51"], [8, "id55"], [8, "id57"], [8, "id59"], [8, "id61"]], "Build": [[8, "build"]], "Built-in Container Conventions": [[3, "built-in-container-conventions"]], "Built-ins": [[0, "built-ins"]], "Client": [[0, "client"]], "Command Line Interface": [[1, null]], "Containers": [[0, "containers"], [3, null]], "Contributors": 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"registri": [0, 1], "regular": 2, "releas": 8, "repair": 1, "search": [1, 2], "searchresult": 2, "select": 2, "summari": 7, "terminologi": 7, "transfer": 1, "upcom": 9, "updat": 1, "us": 2, "usag": 7, "v0": 8, "v1": 8, "v2": 8, "work": 2, "your": 3}}) \ No newline at end of file diff --git a/v2.6.0/upcoming_changes.html b/v2.6.0/upcoming_changes.html new file mode 100644 index 00000000..25da869d --- /dev/null +++ b/v2.6.0/upcoming_changes.html @@ -0,0 +1,122 @@ + + + + + + + + + Upcoming Changes — Happi 2.6.0 documentation + + + + + + + + + + + + + + + + +
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+ + + + \ No newline at end of file diff --git a/versions.json b/versions.json index 965f8983..419afa89 100644 --- a/versions.json +++ b/versions.json @@ -1 +1 @@ -{"folders": ["generated", "master", "v1.13.0", "v1.14.0", "v1.9.0", "v2.0.0", "v2.1.0", "v2.1.1", "v2.2.0", "v2.3.0", "v2.4.0", "v2.5.0"], "default-branch": "master", "labels": {"generated": "generated", "master": "master", "v1.13.0": "v1.13.0", "v1.14.0": "v1.14.0", "v1.9.0": "v1.9.0", "v2.0.0": "v2.0.0", "v2.1.0": "v2.1.0", "v2.1.1": "v2.1.1", "v2.2.0": "v2.2.0", "v2.3.0": "v2.3.0", "v2.4.0": "v2.4.0", "v2.5.0": "v2.5.0 (latest)"}, "versions": ["master", "v2.5.0", "v2.4.0", "v2.3.0", "v2.2.0", "v2.1.1", "v2.1.0", "v2.0.0", "v1.14.0", "v1.13.0", "v1.9.0", "generated"], "warnings": {"generated": ["unreleased"], "master": ["unreleased"], "v1.13.0": ["outdated"], "v1.14.0": ["outdated"], "v1.9.0": ["outdated"], "v2.0.0": ["outdated"], "v2.1.0": ["outdated"], "v2.1.1": ["outdated"], "v2.2.0": ["outdated"], "v2.3.0": ["outdated"], "v2.4.0": ["outdated"], "v2.5.0": []}, "latest": "v2.5.0", "downloads": {"generated": [], "master": [], "v1.13.0": [], "v1.14.0": [], "v1.9.0": [], "v2.0.0": [], "v2.1.0": [], "v2.1.1": [], "v2.2.0": [], "v2.3.0": [], "v2.4.0": [], "v2.5.0": []}} \ No newline at end of file +{"folders": ["generated", "master", "v1.13.0", "v1.14.0", "v1.9.0", "v2.0.0", "v2.1.0", "v2.1.1", "v2.2.0", "v2.3.0", "v2.4.0", "v2.5.0", "v2.6.0"], "default-branch": "master", "labels": {"generated": "generated", "master": "master", "v1.13.0": "v1.13.0", "v1.14.0": "v1.14.0", "v1.9.0": "v1.9.0", "v2.0.0": "v2.0.0", "v2.1.0": "v2.1.0", "v2.1.1": "v2.1.1", "v2.2.0": "v2.2.0", "v2.3.0": "v2.3.0", "v2.4.0": "v2.4.0", "v2.5.0": "v2.5.0", "v2.6.0": "v2.6.0 (latest)"}, "versions": ["master", "v2.6.0", "v2.5.0", "v2.4.0", "v2.3.0", "v2.2.0", "v2.1.1", "v2.1.0", "v2.0.0", "v1.14.0", "v1.13.0", "v1.9.0", "generated"], "warnings": {"generated": ["unreleased"], "master": ["unreleased"], "v1.13.0": ["outdated"], "v1.14.0": ["outdated"], "v1.9.0": ["outdated"], "v2.0.0": ["outdated"], "v2.1.0": ["outdated"], "v2.1.1": ["outdated"], "v2.2.0": ["outdated"], "v2.3.0": ["outdated"], "v2.4.0": ["outdated"], "v2.5.0": ["outdated"], "v2.6.0": []}, "latest": "v2.6.0", "downloads": {"generated": [], "master": [], "v1.13.0": [], "v1.14.0": [], "v1.9.0": [], "v2.0.0": [], "v2.1.0": [], "v2.1.1": [], "v2.2.0": [], "v2.3.0": [], "v2.4.0": [], "v2.5.0": [], "v2.6.0": []}} \ No newline at end of file