devgru

A developmental R environment for a suite of GenomicRanges utilities

Installation

You can install devgru with:

devtools::install_github("pblaney/devgru")

Suite of Packages

The current suite of utilites for devgru can be quickly installed, if needed, and loaded with:

kit_loadout()

GenomicRanges Core

• BSgenome.Hsapiens.UCSC.hg38
• GenomicRanges
• GenomeInfoDb
• data.table
• mskilab-org/gUtils
• VariantAnnotation
• rtracklayer
• Biostrings
• S4Vectors

Utility Core

• dplyr
• stringr
• readr
• ggplot2
• ggsci
• paletter
• scico
• flextable
• mclust
• parallel
• doParallel
• foreach