test_containers_singularity.yml

name: Test sorter images in singularity

on: workflow_dispatch


jobs:
  test-images:
    env:
      SPIKEINTERFACE_DEV_PATH: ${{ github.workspace }}
    name: Test on (${{ matrix.os }})
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        # "macos-latest", "windows-latest"
        os: ["ubuntu-latest", ]
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: '3.10'
      - uses: eWaterCycle/setup-singularity@v7
        with:
          singularity-version: 3.8.7
      - name: Python version
        run:
          python --version
      - name: Singularity version
        run:
          singularity --version
      - name: Check Singularity cache
        run:
          singularity cache list -v
      - name: Clear Singularity cache
        run:
          singularity cache clean --force
      - name: Install dependencies
        run: |
          python -m pip install -U pip  # Official recommended way
          pip install pytest
          pip install -e .[full]
          pip install spython
      - name: Test that containers install the local CI version of spikeinterface
        run: |
          echo $SPIKEINTERFACE_DEV_PATH
          python -c "import os; assert os.getenv('SPIKEINTERFACE_DEV_PATH') is not None"
          ls -l
      - name: Run test singularity containers
        run: |
          pytest -vv --capture=tee-sys -rA src/spikeinterface/sorters/external/tests/test_singularity_containers.py