Update update-page.yml #11
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| name: Generate Pathoplexus Example Data List | |
| on: | |
| push: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install markdown | |
| - name: Create Python script | |
| run: | | |
| cat << EOF > generate_list.py | |
| import os | |
| import html | |
| from datetime import datetime | |
| import markdown | |
| def get_file_icon(file): | |
| ext = os.path.splitext(file)[1].lower() | |
| icon_map = { | |
| ('.fasta', '.fa', '.fna'): '<i class="fas fa-dna" title="FASTA file"></i>', | |
| ('.tsv', '.tab'): '<i class="fas fa-table" title="TSV file"></i>', | |
| ('.py', '.js', '.css', '.html', '.json'): '<i class="fas fa-file-code" title="{} file"></i>', | |
| ('.jpg', '.jpeg', '.png', '.gif', '.svg'): '<i class="fas fa-file-image" title="{} file"></i>', | |
| ('.pdf', '.doc', '.docx', '.txt'): '<i class="fas fa-file-alt" title="{} file"></i>', | |
| } | |
| for extensions, icon in icon_map.items(): | |
| if ext in extensions: | |
| return icon.format(ext[1:]) | |
| return '<i class="fas fa-file"></i>' | |
| def get_readme_content(): | |
| try: | |
| with open('README.md', 'r') as f: | |
| content = f.read() | |
| return markdown.markdown(content) | |
| except FileNotFoundError: | |
| return "<p>README.md not found.</p>" | |
| def generate_html(): | |
| file_list = [] | |
| for root, dirs, files in os.walk('example_files'): | |
| for file in files: | |
| if file != 'index.html' and not file.startswith('.'): | |
| path = os.path.join(root, file) | |
| size = os.path.getsize(path) | |
| mtime = os.path.getmtime(path) | |
| file_list.append((path, size, mtime)) | |
| readme_content = get_readme_content() | |
| html_content = f''' | |
| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <meta charset="UTF-8"> | |
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> | |
| <title>Pathoplexus Example Files</title> | |
| <link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.1/css/all.min.css" rel="stylesheet"> | |
| <style> | |
| body {{ font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif; line-height: 1.6; padding: 20px; background-color: #f4f4f4; color: #333; }} | |
| .container {{ max-width: 800px; margin: 0 auto; background-color: #fff; padding: 20px; border-radius: 5px; box-shadow: 0 2px 5px rgba(0,0,0,0.1); }} | |
| table {{ width: 100%; border-collapse: collapse; margin-top: 20px; }} | |
| th, td {{ padding: 12px; text-align: left; border-bottom: 1px solid #e0e0e0; }} | |
| th {{ background-color: #f2f2f2; font-weight: bold; color: #2c3e50; }} | |
| tr:hover {{ background-color: #f5f5f5; }} | |
| a {{ color: #3498db; text-decoration: none; }} | |
| a:hover {{ color: #2980b9; }} | |
| .file-icon {{ margin-right: 10px; color: #7f8c8d; }} | |
| .file-size, .file-date {{ color: #7f8c8d; font-size: 0.9em; }} | |
| .readme-content {{ margin-bottom: 30px; padding: 20px; border-radius: 5px; }} | |
| .github-link {{ position: absolute; top: 10px; right: 10px; font-size: 24px; color: #333; }} | |
| </style> | |
| </head> | |
| <body> | |
| <div class="container"> | |
| <a href="https://github.com/loculus-project/example_data" class="github-link" target="_blank" rel="noopener noreferrer"> | |
| <i class="fab fa-github" title="View on GitHub"></i> | |
| </a> | |
| <div class="readme-content"> | |
| {readme_content} | |
| </div> | |
| <table> | |
| <thead> | |
| <tr> | |
| <th>File Name</th> | |
| <th>Size</th> | |
| <th>Last Modified</th> | |
| </tr> | |
| </thead> | |
| <tbody> | |
| ''' | |
| for file, size, mtime in sorted(file_list): | |
| file = file.replace("example_files/", "") | |
| icon = get_file_icon(file) | |
| size_str = f'{size/1024:.1f} KB' if size >= 1024 else f'{size} bytes' | |
| date_str = datetime.fromtimestamp(mtime).strftime('%Y-%m-%d %H:%M:%S') | |
| html_content += f''' | |
| <tr> | |
| <td><a href="example_files/{html.escape(file)}">{icon} {html.escape(file)}</a></td> | |
| <td class="file-size">{size_str}</td> | |
| <td class="file-date">{date_str}</td> | |
| </tr> | |
| ''' | |
| html_content += ''' | |
| </tbody> | |
| </table> | |
| </div> | |
| </body> | |
| </html> | |
| ''' | |
| with open('index.html', 'w') as f: | |
| f.write(html_content) | |
| generate_html() | |
| EOF | |
| - name: Generate Pathoplexus example data list | |
| run: python generate_list.py | |
| - name: Commit and push to gh-pages | |
| run: | | |
| git config --global user.name 'GitHub Action' | |
| git config --global user.email '[email protected]' | |
| git checkout -b gh-pages | |
| git add index.html | |
| git commit -m "Update Pathoplexus example data list" || exit 0 | |
| git push -f origin gh-pages |