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gsm_multiple.json
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gsm_multiple.json
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{
"GSM4339769": {
"accession": "GSM4339769",
"supplementary_files": [
{
"filename": "GSM4339769_C141_filtered_feature_bc_matrix.h5",
"url": "ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339769/suppl/GSM4339769_C141_filtered_feature_bc_matrix.h5",
"size": "21360104"
}
],
"platform": {
"accession": "GPL23227",
"title": "BGISEQ-500 (Homo sapiens)"
},
"samples": {
"SRS6216589": {
"accession": "SRS6216589",
"title": "BALF, C141 (scRNA-seq)",
"organism": "Homo sapiens",
"attributes": {
"source_name": "BALF",
"disease state": "Coronavirus infected disease-19 (COVID-19)",
"patient group": "mild",
"tissue": "lung",
"sample type": "BALF",
"cell subsets": "Total cell",
"ENA-SPOT-COUNT": 2825449586,
"ENA-BASE-COUNT": 177690492174,
"ENA-FIRST-PUBLIC": "2020-04-23",
"ENA-LAST-UPDATE": "2020-04-24"
},
"experiments": {
"SRX7802546": {
"accession": "SRX7802546",
"title": "BGISEQ-500 paired end sequencing; GSM4339769: BALF, C141 (scRNA-seq); Homo sapiens; RNA-Seq",
"platform": "BGISEQ",
"instrument": "BGISEQ-500",
"runs": {
"SRR11181954": {
"accession": "SRR11181954",
"experiment": "SRX7802546",
"study": "SRP250732",
"sample": "SRS6216589",
"title": "BGISEQ-500 paired end sequencing; GSM4339769: BALF, C141 (scRNA-seq); Homo sapiens; RNA-Seq",
"attributes": {
"loader": "fastq-load.py",
"options": "--read1PairFiles=\"C141_R1.fastq.gz\" --read2PairFiles=\"C141_R2.fastq.gz\"",
"ENA-SPOT-COUNT": 2825449586,
"ENA-BASE-COUNT": 177690492174,
"ENA-FIRST-PUBLIC": "2020-04-23",
"ENA-LAST-UPDATE": "2020-07-30"
},
"files": {
"ftp": [
{
"url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR111/054/SRR11181954/SRR11181954.fastq.gz",
"md5": "366a3a273a85e820bddbcb1e58df383b",
"size": 147793265862
}
],
"aws": [
{
"url": "https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11181954/C141_R1.fastq.1"
},
{
"url": "https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11181954/C141_R2.fastq.1"
}
],
"gcp": [
{
"url": "https://storage.googleapis.com/nih-sequence-read-archive/sra-src/SRR11181954/C141_R1.fastq.1"
},
{
"url": "https://storage.googleapis.com/nih-sequence-read-archive/sra-src/SRR11181954/C141_R2.fastq.1"
}
],
"ncbi": [
{
"url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11181954/SRR11181954.2"
}
]
}
}
}
}
}
}
}
},
"GSM4339770": {
"accession": "GSM4339770",
"supplementary_files": [
{
"filename": "GSM4339770_C142_filtered_feature_bc_matrix.h5",
"url": "ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339770/suppl/GSM4339770_C142_filtered_feature_bc_matrix.h5",
"size": "21138285"
}
],
"platform": {
"accession": "GPL23227",
"title": "BGISEQ-500 (Homo sapiens)"
},
"samples": {
"SRS6216590": {
"accession": "SRS6216590",
"title": "BALF, C142 (scRNA-seq)",
"organism": "Homo sapiens",
"attributes": {
"source_name": "BALF",
"disease state": "Coronavirus infected disease-19 (COVID-19)",
"patient group": "mild",
"tissue": "lung",
"sample type": "BALF",
"cell subsets": "Total cell",
"ENA-SPOT-COUNT": 2464780618,
"ENA-BASE-COUNT": 154973836954,
"ENA-FIRST-PUBLIC": "2020-04-23",
"ENA-LAST-UPDATE": "2020-04-24"
},
"experiments": {
"SRX7802547": {
"accession": "SRX7802547",
"title": "BGISEQ-500 paired end sequencing; GSM4339770: BALF, C142 (scRNA-seq); Homo sapiens; RNA-Seq",
"platform": "BGISEQ",
"instrument": "BGISEQ-500",
"runs": {
"SRR11181955": {
"accession": "SRR11181955",
"experiment": "SRX7802547",
"study": "SRP250732",
"sample": "SRS6216590",
"title": "BGISEQ-500 paired end sequencing; GSM4339770: BALF, C142 (scRNA-seq); Homo sapiens; RNA-Seq",
"attributes": {
"loader": "fastq-load.py",
"options": "--read1PairFiles=\"C142_R1.fastq.gz\" --read2PairFiles=\"C142_R2.fastq.gz\"",
"ENA-SPOT-COUNT": 2464780618,
"ENA-BASE-COUNT": 154973836954,
"ENA-FIRST-PUBLIC": "2020-04-23",
"ENA-LAST-UPDATE": "2020-07-30"
},
"files": {
"ftp": [
{
"url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR111/055/SRR11181955/SRR11181955.fastq.gz",
"md5": "edc6f8fd31d797d9a4112bb1334f0bde",
"size": 129430871014
}
],
"aws": [
{
"url": "s3://sra-pub-src-11/SRR11181955/C142_R1.fastq.1"
},
{
"url": "s3://sra-pub-src-11/SRR11181955/C142_R2.fastq.1"
}
],
"gcp": [
{
"url": "gs://sra-pub-src-11/SRR11181955/C142_R1.fastq.1"
},
{
"url": "gs://sra-pub-src-11/SRR11181955/C142_R2.fastq.1"
}
],
"ncbi": [
{
"url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11181955/SRR11181955.2"
}
]
}
}
}
}
}
}
}
},
"GSM4339771": {
"accession": "GSM4339771",
"supplementary_files": [
{
"filename": "GSM4339771_C143_filtered_feature_bc_matrix.h5",
"url": "ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339771/suppl/GSM4339771_C143_filtered_feature_bc_matrix.h5",
"size": "53660847"
}
],
"platform": {
"accession": "GPL23227",
"title": "BGISEQ-500 (Homo sapiens)"
},
"samples": {
"SRS6216591": {
"accession": "SRS6216591",
"title": "BALF, C143 (scRNA-seq)",
"organism": "Homo sapiens",
"attributes": {
"source_name": "BALF",
"disease state": "Coronavirus infected disease-19 (COVID-19)",
"patient group": "severe",
"tissue": "lung",
"sample type": "BALF",
"cell subsets": "Total cell",
"ENA-SPOT-COUNT": 2835372634,
"ENA-BASE-COUNT": 178372867658,
"ENA-FIRST-PUBLIC": "2020-04-23",
"ENA-LAST-UPDATE": "2020-04-24"
},
"experiments": {
"SRX7802548": {
"accession": "SRX7802548",
"title": "BGISEQ-500 paired end sequencing; GSM4339771: BALF, C143 (scRNA-seq); Homo sapiens; RNA-Seq",
"platform": "BGISEQ",
"instrument": "BGISEQ-500",
"runs": {
"SRR11181956": {
"accession": "SRR11181956",
"experiment": "SRX7802548",
"study": "SRP250732",
"sample": "SRS6216591",
"title": "BGISEQ-500 paired end sequencing; GSM4339771: BALF, C143 (scRNA-seq); Homo sapiens; RNA-Seq",
"attributes": {
"loader": "fastq-load.py",
"options": "--read1PairFiles=\"C143_R1.fastq.gz\" --read2PairFiles=\"C143_R2.fastq.gz\"",
"ENA-SPOT-COUNT": 2835372634,
"ENA-BASE-COUNT": 178372867658,
"ENA-FIRST-PUBLIC": "2020-04-23",
"ENA-LAST-UPDATE": "2020-07-30"
},
"files": {
"ftp": [
{
"url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR111/056/SRR11181956/SRR11181956.fastq.gz",
"md5": "bd99affef5ca502a9e16e94d2ef04434",
"size": 148485489095
}
],
"aws": [
{
"url": "https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11181956/C143_R1.fastq.1"
},
{
"url": "https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11181956/C143_R2.fastq.1"
}
],
"gcp": [
{
"url": "https://storage.googleapis.com/nih-sequence-read-archive/sra-src/SRR11181956/C143_R1.fastq.1"
},
{
"url": "https://storage.googleapis.com/nih-sequence-read-archive/sra-src/SRR11181956/C143_R2.fastq.1"
}
],
"ncbi": [
{
"url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11181956/SRR11181956.2"
}
]
}
}
}
}
}
}
}
}
}