© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Contributing.html b/unstable/Contributing.html index 05e0b14a47..c4651c0391 100644 --- a/unstable/Contributing.html +++ b/unstable/Contributing.html @@ -140,7 +140,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Developers.html b/unstable/Developers.html index 856fa88ea9..96e0757deb 100644 --- a/unstable/Developers.html +++ b/unstable/Developers.html @@ -127,7 +127,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Example_scripts.html b/unstable/Example_scripts.html index 5baaa5fe2f..cb918846c3 100644 --- a/unstable/Example_scripts.html +++ b/unstable/Example_scripts.html @@ -140,7 +140,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/General_disclaimer.html b/unstable/General_disclaimer.html index e041135561..ed24863f09 100644 --- a/unstable/General_disclaimer.html +++ b/unstable/General_disclaimer.html @@ -98,7 +98,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Horace_manual.html b/unstable/Horace_manual.html index 45b5452712..54f0b05998 100644 --- a/unstable/Horace_manual.html +++ b/unstable/Horace_manual.html @@ -381,7 +381,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/How_to_cite_Horace.html b/unstable/How_to_cite_Horace.html index f7a2dc3546..c62da2fcf2 100644 --- a/unstable/How_to_cite_Horace.html +++ b/unstable/How_to_cite_Horace.html @@ -111,7 +111,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Introduction.html b/unstable/Introduction.html index 2505feeec9..82f0e25d40 100644 --- a/unstable/Introduction.html +++ b/unstable/Introduction.html @@ -126,7 +126,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Papers_citing_Horace.html b/unstable/Papers_citing_Horace.html index 154f347503..3f3a4a42a0 100644 --- a/unstable/Papers_citing_Horace.html +++ b/unstable/Papers_citing_Horace.html @@ -228,7 +228,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/Unsorted.html b/unstable/Unsorted.html index a0bc63a9a2..966d9aab95 100644 --- a/unstable/Unsorted.html +++ b/unstable/Unsorted.html @@ -127,7 +127,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/User_guide.html b/unstable/User_guide.html index 4a2d54f3ff..4d21ad9937 100644 --- a/unstable/User_guide.html +++ b/unstable/User_guide.html @@ -151,6 +151,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/_sources/user_guide/Horace3_to_4.rst.txt b/unstable/_sources/user_guide/Horace3_to_4.rst.txt index 04683414d3..931efa9cdf 100644 --- a/unstable/_sources/user_guide/Horace3_to_4.rst.txt +++ b/unstable/_sources/user_guide/Horace3_to_4.rst.txt @@ -69,6 +69,13 @@ Passing a pair of vectors will still be accepted and be internally transformed into the correct ``Symop``, however, it is still best to switch. +Spaghetti Plot +-------------- + +``qwidth`` in ``spaghetti_plot`` arguments now correctly refers to a full-width of the perpendicular +bins. This means that to achieve the same results in Horace 4 as Horace 3, a user-specified +``qwidth`` should be twice as large. Default ``qwidths`` have been updated to reflect this change. + Crystal Alignment ----------------- diff --git a/unstable/developers/Become_a_developer.html b/unstable/developers/Become_a_developer.html index 529b74bb70..26f875e437 100644 --- a/unstable/developers/Become_a_developer.html +++ b/unstable/developers/Become_a_developer.html @@ -105,7 +105,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/developers/Developer_info.html b/unstable/developers/Developer_info.html index fd8b80a279..6169d87b79 100644 --- a/unstable/developers/Developer_info.html +++ b/unstable/developers/Developer_info.html @@ -134,7 +134,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/developers/For_Developers.html b/unstable/developers/For_Developers.html index f48aaa7287..40f84d14fd 100644 --- a/unstable/developers/For_Developers.html +++ b/unstable/developers/For_Developers.html @@ -116,7 +116,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/developers/Known_bugs.html b/unstable/developers/Known_bugs.html index bf3015b5f4..8b3641bb93 100644 --- a/unstable/developers/Known_bugs.html +++ b/unstable/developers/Known_bugs.html @@ -142,7 +142,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/advanced_plotting.html b/unstable/example_scripts/advanced_plotting.html index a2be72523e..0b0280ce8c 100644 --- a/unstable/example_scripts/advanced_plotting.html +++ b/unstable/example_scripts/advanced_plotting.html @@ -308,7 +308,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/align_and_symmetrise.html b/unstable/example_scripts/align_and_symmetrise.html index 8df480d11b..a9b5e45787 100644 --- a/unstable/example_scripts/align_and_symmetrise.html +++ b/unstable/example_scripts/align_and_symmetrise.html @@ -281,7 +281,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/basic_usage.html b/unstable/example_scripts/basic_usage.html index 6b0dae568a..4b9e8d7fed 100644 --- a/unstable/example_scripts/basic_usage.html +++ b/unstable/example_scripts/basic_usage.html @@ -331,7 +331,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/corrections.html b/unstable/example_scripts/corrections.html index 8e2d8abca1..284c9d85c7 100644 --- a/unstable/example_scripts/corrections.html +++ b/unstable/example_scripts/corrections.html @@ -229,7 +229,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/data_corrections.html b/unstable/example_scripts/data_corrections.html index ce8ccfde07..882f0d43ef 100644 --- a/unstable/example_scripts/data_corrections.html +++ b/unstable/example_scripts/data_corrections.html @@ -188,7 +188,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/dnd_vs_sqw.html b/unstable/example_scripts/dnd_vs_sqw.html index 8244961ee0..8271efa11c 100644 --- a/unstable/example_scripts/dnd_vs_sqw.html +++ b/unstable/example_scripts/dnd_vs_sqw.html @@ -302,7 +302,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/gpo_fitting_spinw.html b/unstable/example_scripts/gpo_fitting_spinw.html index df2b706177..4fe5b60a52 100644 --- a/unstable/example_scripts/gpo_fitting_spinw.html +++ b/unstable/example_scripts/gpo_fitting_spinw.html @@ -182,7 +182,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/horace_diagnostics.html b/unstable/example_scripts/horace_diagnostics.html index c15305f8bf..bf5b5d421d 100644 --- a/unstable/example_scripts/horace_diagnostics.html +++ b/unstable/example_scripts/horace_diagnostics.html @@ -503,7 +503,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/horace_whole_course_full_script.html b/unstable/example_scripts/horace_whole_course_full_script.html index aacd782694..e8565e2981 100644 --- a/unstable/example_scripts/horace_whole_course_full_script.html +++ b/unstable/example_scripts/horace_whole_course_full_script.html @@ -1031,7 +1031,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/sample_misalignment.html b/unstable/example_scripts/sample_misalignment.html index 6fc487ac63..7c8db1786e 100644 --- a/unstable/example_scripts/sample_misalignment.html +++ b/unstable/example_scripts/sample_misalignment.html @@ -225,7 +225,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/simulation_fitting.html b/unstable/example_scripts/simulation_fitting.html index b61ab1523e..aba988b6da 100644 --- a/unstable/example_scripts/simulation_fitting.html +++ b/unstable/example_scripts/simulation_fitting.html @@ -224,7 +224,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/spinw_gpo_1dfit.html b/unstable/example_scripts/spinw_gpo_1dfit.html index ba4b35348f..79e598e92c 100644 --- a/unstable/example_scripts/spinw_gpo_1dfit.html +++ b/unstable/example_scripts/spinw_gpo_1dfit.html @@ -222,7 +222,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/spurions.html b/unstable/example_scripts/spurions.html index 235c014538..6630aa43b4 100644 --- a/unstable/example_scripts/spurions.html +++ b/unstable/example_scripts/spurions.html @@ -242,7 +242,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/sqwgeneration_tips.html b/unstable/example_scripts/sqwgeneration_tips.html index f27c3a29fc..6f1ea7ea6f 100644 --- a/unstable/example_scripts/sqwgeneration_tips.html +++ b/unstable/example_scripts/sqwgeneration_tips.html @@ -265,7 +265,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/example_scripts/symmetrisation.html b/unstable/example_scripts/symmetrisation.html index 4331bbf826..1da2b13e20 100644 --- a/unstable/example_scripts/symmetrisation.html +++ b/unstable/example_scripts/symmetrisation.html @@ -190,7 +190,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/genindex.html b/unstable/genindex.html index b2c101d105..b098988475 100644 --- a/unstable/genindex.html +++ b/unstable/genindex.html @@ -93,7 +93,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/introduction/Download_and_setup.html b/unstable/introduction/Download_and_setup.html index b55dfa20af..4b2dd5271c 100644 --- a/unstable/introduction/Download_and_setup.html +++ b/unstable/introduction/Download_and_setup.html @@ -311,7 +311,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/introduction/Support_and_updates.html b/unstable/introduction/Support_and_updates.html index 980936cc06..e5e5800a53 100644 --- a/unstable/introduction/Support_and_updates.html +++ b/unstable/introduction/Support_and_updates.html @@ -132,7 +132,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/introduction/The_Horace_Rationale.html b/unstable/introduction/The_Horace_Rationale.html index 57e7705de0..2e2a0ccdf8 100644 --- a/unstable/introduction/The_Horace_Rationale.html +++ b/unstable/introduction/The_Horace_Rationale.html @@ -108,7 +108,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Advanced_Multifit.html b/unstable/manual/Advanced_Multifit.html index 55015f4aee..bbbbbfc97f 100644 --- a/unstable/manual/Advanced_Multifit.html +++ b/unstable/manual/Advanced_Multifit.html @@ -266,7 +266,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Binary_operations.html b/unstable/manual/Binary_operations.html index 6651e807a9..4f867410ad 100644 --- a/unstable/manual/Binary_operations.html +++ b/unstable/manual/Binary_operations.html @@ -349,7 +349,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Changing_Horace_settings.html b/unstable/manual/Changing_Horace_settings.html index afa3b35e5c..d10a1a0a76 100644 --- a/unstable/manual/Changing_Horace_settings.html +++ b/unstable/manual/Changing_Horace_settings.html @@ -336,7 +336,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Changing_object_type.html b/unstable/manual/Changing_object_type.html index 0a8f0f4e7f..139a92265e 100644 --- a/unstable/manual/Changing_object_type.html +++ b/unstable/manual/Changing_object_type.html @@ -152,7 +152,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Correcting_for_sample_misalignment.html b/unstable/manual/Correcting_for_sample_misalignment.html index 663dae7ec8..ea8e13d728 100644 --- a/unstable/manual/Correcting_for_sample_misalignment.html +++ b/unstable/manual/Correcting_for_sample_misalignment.html @@ -472,7 +472,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Cutting_data_of_interest_from_SQW_files_and_objects.html b/unstable/manual/Cutting_data_of_interest_from_SQW_files_and_objects.html index 46ee22a2cb..88660a6717 100644 --- a/unstable/manual/Cutting_data_of_interest_from_SQW_files_and_objects.html +++ b/unstable/manual/Cutting_data_of_interest_from_SQW_files_and_objects.html @@ -1357,7 +1357,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Data_diagnostics.html b/unstable/manual/Data_diagnostics.html index 4ffa69930c..548fe520e2 100644 --- a/unstable/manual/Data_diagnostics.html +++ b/unstable/manual/Data_diagnostics.html @@ -208,7 +208,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/FAQ.html b/unstable/manual/FAQ.html index 9ec5cd4254..a684bccf65 100644 --- a/unstable/manual/FAQ.html +++ b/unstable/manual/FAQ.html @@ -244,7 +244,7 @@© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
© Copyright 2006-2024, STFC RAL. - Last updated on Jul 4, 2024, 5:47:05 PM. + Last updated on Jul 8, 2024, 9:13:45 AM.
.par
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/List_of_functions.html b/unstable/manual/List_of_functions.html
index ebe7926a65..7a1e899b9c 100644
--- a/unstable/manual/List_of_functions.html
+++ b/unstable/manual/List_of_functions.html
@@ -238,7 +238,7 @@ List of functions
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Multifit.html b/unstable/manual/Multifit.html
index db9ffe91d6..3291bb3650 100644
--- a/unstable/manual/Multifit.html
+++ b/unstable/manual/Multifit.html
@@ -569,7 +569,7 @@ 15.5. Parallel fitting
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Parallel.html b/unstable/manual/Parallel.html
index 9abe511fc0..378a92b618 100644
--- a/unstable/manual/Parallel.html
+++ b/unstable/manual/Parallel.html
@@ -303,7 +303,7 @@ 17.4. Slurm Jobs
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Planning_a_Horace_scan.html b/unstable/manual/Planning_a_Horace_scan.html
index 2368aa4da6..c7b4342c6c 100644
--- a/unstable/manual/Planning_a_Horace_scan.html
+++ b/unstable/manual/Planning_a_Horace_scan.html
@@ -279,7 +279,7 @@ 1.2. More detailed planning of scans
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Plotting.html b/unstable/manual/Plotting.html
index 4bfac268de..b99c534850 100644
--- a/unstable/manual/Plotting.html
+++ b/unstable/manual/Plotting.html
@@ -617,7 +617,7 @@ 13.35.1. Miscellaneous functions
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Reshaping_etc.html b/unstable/manual/Reshaping_etc.html
index 5e74ac8c4a..1fcd591ece 100644
--- a/unstable/manual/Reshaping_etc.html
+++ b/unstable/manual/Reshaping_etc.html
@@ -448,7 +448,7 @@ 9.9.
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Save_and_load.html b/unstable/manual/Save_and_load.html
index 10e861c5cc..920e5d7951 100644
--- a/unstable/manual/Save_and_load.html
+++ b/unstable/manual/Save_and_load.html
@@ -176,7 +176,7 @@ 8.1. save
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_correcting_sample_misalignment.html b/unstable/manual/Script_for_correcting_sample_misalignment.html
index a02d1d85f9..e806a80186 100644
--- a/unstable/manual/Script_for_correcting_sample_misalignment.html
+++ b/unstable/manual/Script_for_correcting_sample_misalignment.html
@@ -133,7 +133,7 @@ Script for correcting sample misalignment
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_data_treatment.html b/unstable/manual/Script_for_data_treatment.html
index ea20beae43..97fb2becbb 100644
--- a/unstable/manual/Script_for_data_treatment.html
+++ b/unstable/manual/Script_for_data_treatment.html
@@ -138,7 +138,7 @@ Script for data treatment
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_fitting.html b/unstable/manual/Script_for_fitting.html
index ca4c03c5df..ceb4b602d8 100644
--- a/unstable/manual/Script_for_fitting.html
+++ b/unstable/manual/Script_for_fitting.html
@@ -202,7 +202,7 @@ Script for fitting
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_generating_sqw_files.html b/unstable/manual/Script_for_generating_sqw_files.html
index 3c27f29966..010f237bbf 100644
--- a/unstable/manual/Script_for_generating_sqw_files.html
+++ b/unstable/manual/Script_for_generating_sqw_files.html
@@ -170,7 +170,7 @@ Script for generating sqw files
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_making_cuts_and_plotting.html b/unstable/manual/Script_for_making_cuts_and_plotting.html
index 055d1ef886..5821948304 100644
--- a/unstable/manual/Script_for_making_cuts_and_plotting.html
+++ b/unstable/manual/Script_for_making_cuts_and_plotting.html
@@ -180,7 +180,7 @@ Script for making cuts and plotting
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_making_publication_quality_figures.html b/unstable/manual/Script_for_making_publication_quality_figures.html
index 3ea14774f4..ae7af416af 100644
--- a/unstable/manual/Script_for_making_publication_quality_figures.html
+++ b/unstable/manual/Script_for_making_publication_quality_figures.html
@@ -191,7 +191,7 @@ Script for making publication quality figures
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_making_simulations.html b/unstable/manual/Script_for_making_simulations.html
index 7808d794b2..7453526947 100644
--- a/unstable/manual/Script_for_making_simulations.html
+++ b/unstable/manual/Script_for_making_simulations.html
@@ -211,7 +211,7 @@ Plotting dispersion
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Script_for_planning_an_experiment.html b/unstable/manual/Script_for_planning_an_experiment.html
index 4c40981d79..19c5eddb29 100644
--- a/unstable/manual/Script_for_planning_an_experiment.html
+++ b/unstable/manual/Script_for_planning_an_experiment.html
@@ -126,7 +126,7 @@ Script for planning an experiment
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Simulation.html b/unstable/manual/Simulation.html
index 76ab7227bb..c560effef9 100644
--- a/unstable/manual/Simulation.html
+++ b/unstable/manual/Simulation.html
@@ -461,7 +461,7 @@ 14.6. disp2sqw_plot
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Special_sqw_information.html b/unstable/manual/Special_sqw_information.html
index 8ff7925694..5b986c8f7c 100644
--- a/unstable/manual/Special_sqw_information.html
+++ b/unstable/manual/Special_sqw_information.html
@@ -249,7 +249,7 @@ 6.3. save_xye
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Symmetrising_etc.html b/unstable/manual/Symmetrising_etc.html
index 033a7c1c65..d1c1f57621 100644
--- a/unstable/manual/Symmetrising_etc.html
+++ b/unstable/manual/Symmetrising_etc.html
@@ -775,7 +775,7 @@ 10.9.3.
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Tobyfit.html b/unstable/manual/Tobyfit.html
index 6a683eaba6..23c8086ead 100644
--- a/unstable/manual/Tobyfit.html
+++ b/unstable/manual/Tobyfit.html
@@ -317,7 +317,7 @@ 16.2.2.2. Controlling which contribution
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/manual/Unary_operations.html b/unstable/manual/Unary_operations.html
index 04c2f231bc..6879e3d0d6 100644
--- a/unstable/manual/Unary_operations.html
+++ b/unstable/manual/Unary_operations.html
@@ -187,7 +187,7 @@ 11.4. Other mathematical functions
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/new_page.html b/unstable/new_page.html
index b46d990348..7bd5c03638 100644
--- a/unstable/new_page.html
+++ b/unstable/new_page.html
@@ -113,7 +113,7 @@ Subsection Title
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/objects.inv b/unstable/objects.inv
index 8461d8de77..33793fca3f 100644
Binary files a/unstable/objects.inv and b/unstable/objects.inv differ
diff --git a/unstable/search.html b/unstable/search.html
index 9344855ab9..89140ad673 100644
--- a/unstable/search.html
+++ b/unstable/search.html
@@ -101,7 +101,7 @@
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/searchindex.js b/unstable/searchindex.js
index d97eddc1a3..759c22be76 100644
--- a/unstable/searchindex.js
+++ b/unstable/searchindex.js
@@ -1 +1 @@
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"convert": 69, "deprec": 69, "gui": 70, "tab": 70, "interfac": 71, "program": 71, "content": [71, 72], "recap": 71, "evalu": 71, "workspac": 71, "energi": 71, "euphon": 71, "python": 71, "fortran": 71, "prerequisit": 71, "ellipsoid": 72, "theori": 72, "refer": 72}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 58}, "alltitles": {"Citing Horace": [[0, "citing-horace"]], "Contributing to Horace": [[1, "contributing-to-horace"]], "Contributing documentation": [[1, "contributing-documentation"]], "Contributing reports": [[1, "contributing-reports"]], "Contributing code": [[1, "contributing-code"]], "For Developers": [[2, "for-developers"], [14, "for-developers"]], "Example Scripts": [[3, "example-scripts"]], "Horace Example Scripts": [[3, null]], "General disclaimer": [[4, "general-disclaimer"]], "Horace Manual": [[5, "horace-manual"]], "Horace Manual Appendix": [[5, null]], "How to cite Horace": [[6, "how-to-cite-horace"]], "Introduction and Setup": [[7, "introduction-and-setup"]], "Papers citing Horace": [[8, "papers-citing-horace"]], "2010": [[8, "id1"]], "2011": [[8, "id2"]], "2012": [[8, "id3"]], "2013": [[8, "id4"]], "2014": [[8, "id5"]], "2015": [[8, "id6"]], "2016": [[8, "id7"]], "2017": [[8, "id8"]], "2018": [[8, "id9"]], "Previous Versions": [[9, "previous-versions"]], "Unsorted Manual Pages": [[10, "unsorted-manual-pages"]], "User\u2019s Guide": [[11, "user-s-guide"]], "User's Guide": [[11, null]], "Become a developer": [[12, "become-a-developer"]], "Developer info": [[13, "developer-info"]], "Github": [[13, "github"]], "Horace configuration on isiscompute & iDaaaS servers": [[13, "horace-configuration-on-isiscompute-idaaas-servers"]], "Building Horace distribution kit": [[13, "building-horace-distribution-kit"]], "Getting started": [[14, "getting-started"], [68, "getting-started"]], "Known bugs": [[15, "known-bugs"]], "Current issues": [[15, "current-issues"]], "Symmetrisation problem with dnd data": [[15, "symmetrisation-problem-with-dnd-data"]], "Broken pipe error": [[15, "broken-pipe-error"]], "Fatal Read Error": [[15, "fatal-read-error"]], "Advanced Plotting": [[16, "advanced-plotting"]], "Align and Symmetrise": [[17, "align-and-symmetrise"]], "Basic Usage": [[18, "basic-usage"]], "Corrections": [[19, "corrections"]], "Data Corrections": [[20, "data-corrections"]], "dnd vs sqw: the difference": [[21, "dnd-vs-sqw-the-difference"]], "General principle": [[21, "general-principle"]], "Specific case A: resolution modelling": [[21, "specific-case-a-resolution-modelling"]], "Specific case B: spurion identification": [[21, "specific-case-b-spurion-identification"]], "Specific case C: smoothing": [[21, "specific-case-c-smoothing"]], "Specific case D: symmetrisation": [[21, "specific-case-d-symmetrisation"]], "Whole Script": [[21, "whole-script"]], "GPO fitting SpinW": [[22, "gpo-fitting-spinw"]], "Horace Diagnostics": [[23, "horace-diagnostics"]], "Generating data": [[23, "generating-data"], [23, "id1"]], "Run inspector": [[23, "run-inspector"]], "Understanding data from a single orientation": [[23, "understanding-data-from-a-single-orientation"]], "coordinates_calc": [[23, "coordinates-calc"]], "hkle": [[23, "hkle"]], "Putting it all together": [[23, "putting-it-all-together"]], "Whole script": [[23, "whole-script"]], "Horace course": [[24, "horace-course"]], "Sample Misalignment": [[25, "sample-misalignment"]], "Simulation Fitting": [[26, "simulation-fitting"]], "Spinw GPO 1dfit": [[27, "spinw-gpo-1dfit"]], "Spurions": [[28, "spurions"]], "SQW Generation tips": [[29, "sqw-generation-tips"]], "Symmetrisation": [[30, "symmetrisation"], [69, "symmetrisation"], [70, "symmetrisation"]], "Horace: visualising and manipulating S(\\mathbf{Q},\\omega) measured in all four dimensions": [[31, "horace-visualising-and-manipulating-s-mathbf-q-omega-measured-in-all-four-dimensions"]], "Download and setup": [[32, "download-and-setup"]], "System Requirements": [[32, "system-requirements"]], "Download": [[32, "download"]], "Installation Instructions": [[32, "installation-instructions"]], "Standard Matlab install": [[32, "standard-matlab-install"]], "Installing the latest version": [[32, "installing-the-latest-version"]], "CMake install": [[32, "cmake-install"]], "Horace Configuration": [[32, "horace-configuration"]], "High Performance Computing Configuration": [[32, "high-performance-computing-configuration"]], "Troubleshooting": [[32, "troubleshooting"]], "Support and updates": [[33, "support-and-updates"]], "Support": [[33, "support"]], "Updates": [[33, "updates"]], "The Horace Rationale": [[34, "the-horace-rationale"]], "Advanced Multifit": [[35, "advanced-multifit"]], "Multifit methods requirements": [[35, "multifit-methods-requirements"]], "Fit functions": [[35, "fit-functions"]], "Utility methods": [[35, "utility-methods"]], "mask": [[35, "mask"], [50, "mask"]], "mask_points [optional]": [[35, "mask-points-optional"]], "sigvar_get": [[35, "sigvar-get"]], "sigvar_getx [optional]": [[35, "sigvar-getx-optional"]], "plus [optional]": [[35, "plus-optional"]], "Binary operations": [[36, "binary-operations"], [66, "binary-operations"]], "Introduction": [[36, "introduction"], [63, "introduction"]], "sqw objects": [[36, "sqw-objects"]], "Single sqw object": [[36, "single-sqw-object"]], "Array of sqw objects": [[36, "array-of-sqw-objects"]], "dnd objects": [[36, "dnd-objects"]], "Single dnd object": [[36, "single-dnd-object"]], "Array of dnd objects": [[36, "array-of-dnd-objects"]], "Tips and Tricks": [[36, "tips-and-tricks"]], "List of operations and their equivalent code": [[36, "list-of-operations-and-their-equivalent-code"]], "Binary operations manager": [[36, "binary-operations-manager"]], "Changing Horace settings": [[37, "changing-horace-settings"]], "Horace Config": [[37, "horace-config"]], "HPC Config": [[37, "hpc-config"]], "Parallel Config": [[37, "parallel-config"]], "Changing object type": [[38, "changing-object-type"]], "sqw": [[38, "sqw"]], "dnd": [[38, "dnd"]], "IX_datasets": [[38, "ix-datasets"]], "Correcting for sample misalignment": [[39, "correcting-for-sample-misalignment"]], "Step 1 - determining the true Bragg peak positions": [[39, "step-1-determining-the-true-bragg-peak-positions"]], "Bragg Positions": [[39, "bragg-positions"]], "Step 2 - check the Bragg positions fits worked properly": [[39, "step-2-check-the-bragg-positions-fits-worked-properly"]], "Step 3 - calculate the misalignment correction": [[39, "step-3-calculate-the-misalignment-correction"]], "Step 4 - apply the correction to the data": [[39, "step-4-apply-the-correction-to-the-data"]], "Option 1 : apply the correction to an existing sqw file": [[39, "option-1-apply-the-correction-to-an-existing-sqw-file"]], "Option 2 : calculate goniometer offsets for regeneration of sqw file(s)": [[39, "option-2-calculate-goniometer-offsets-for-regeneration-of-sqw-file-s"]], "Option 2a (for use with e.g. Mslice): calculate the true u and v for your misaligned crystal": [[39, "option-2a-for-use-with-e-g-mslice-calculate-the-true-u-and-v-for-your-misaligned-crystal"]], "List of alignment correction routines": [[39, "list-of-alignment-correction-routines"]], "bragg_positions": [[39, "id1"]], "bragg_positions_view": [[39, "bragg-positions-view"]], "crystal_pars_correct": [[39, "crystal-pars-correct"]], "refine_crystal": [[39, "refine-crystal"]], "ubmatrix": [[39, "ubmatrix"]], "uv_correct": [[39, "uv-correct"]], "rlu_corr_to_lattice": [[39, "rlu-corr-to-lattice"]], "Cutting data of interest from SQW files and objects": [[40, "cutting-data-of-interest-from-sqw-files-and-objects"]], "cut": [[40, "cut"], [50, "cut"]], "Data Source": [[40, "datasource"]], "Projection (proj)": [[40, "projection-proj"]], "Binning arguments": [[40, "binning-arguments"]], "File- and memory-backed cuts": [[40, "file-and-memory-backed-cuts"]], "Projection in more detail": [[40, "projection-in-more-detail"]], "Lattice based projections (line_proj)": [[40, "lattice-based-projections-line-proj"]], "Non-orthogonal axes": [[40, "non-orthogonal-axes"]], "line_proj 2D cut examples: Fe Scattering Function": [[40, "line-proj-2d-cut-examples-fe-scattering-function"]], "line_proj 1D cut example": [[40, "line-proj-1d-cut-example"]], "Spherical Projections": [[40, "spherical-projections"]], "sphere_proj 2D and 1D cuts examples:": [[40, "sphere-proj-2d-and-1d-cuts-examples"]], "Cylindrical Projections": [[40, "cylindrical-projections"]], "cylinder_proj 2D and 1D cuts examples:": [[40, "cylinder-proj-2d-and-1d-cuts-examples"]], "Additional notes": [[40, "additional-notes"]], "Auto-binning algorithm": [[40, "auto-binning-algorithm"]], "Legacy calls to cut: cut_sqw and cut_dnd": [[40, "legacy-calls-to-cut-cut-sqw-and-cut-dnd"]], "section": [[40, "section"], [50, "section"]], "Data diagnostics": [[41, "data-diagnostics"]], "run_inspector": [[41, "run-inspector"]], "split": [[41, "split"]], "join": [[41, "join"]], "FAQ": [[42, "faq"]], "Can I include more than one data file (spe/nxspe) with the same experimental configuration in an sqw file?": [[42, "can-i-include-more-than-one-data-file-spe-nxspe-with-the-same-experimental-configuration-in-an-sqw-file"]], "What is the difference between sqw and dnd objects": [[42, "what-is-the-difference-between-sqw-and-dnd-objects"]], "Summary": [[42, "summary"]], "Memory requirements": [[42, "memory-requirements"]], "Implications for simulations and fitting": [[42, "implications-for-simulations-and-fitting"]], "I\u2019ve got a problem and I can\u2019t find figure out how to solve it from the information on this website!": [[42, "i-ve-got-a-problem-and-i-can-t-find-figure-out-how-to-solve-it-from-the-information-on-this-website"]], "Generating SQW files": [[43, "generating-sqw-files"]], "accumulate_sqw": [[43, "accumulate-sqw"]], "gen_sqw": [[43, "gen-sqw"], [62, "gen-sqw"]], "Applying symmetry operations to an entire dataset": [[43, "applying-symmetry-operations-to-an-entire-dataset"]], "Input file formats": [[44, "input-file-formats"]], ".nxspe file": [[44, "nxspe-file"]], "gen_nxspe": [[44, "gen-nxspe"]], ".spe file and .par file": [[44, "spe-file-and-par-file"]], ".spe file format": [[44, "spe-file-format"]], ".par file format": [[44, "par-file-format"]], "List of functions": [[45, "list-of-functions"]], "Multifit": [[46, "multifit"], [69, "multifit"]], "Overview": [[46, "overview"]], "Introduction to setting up and performing a fit": [[46, "introduction-to-setting-up-and-performing-a-fit"]], "Simple fitting": [[46, "simple-fitting"]], "Background functions": [[46, "background-functions"]], "Binding parameters": [[46, "binding-parameters"]], "Semi-global fits": [[46, "semi-global-fits"]], "Summary of commands with multifit": [[46, "summary-of-commands-with-multifit"]], "Fitting functions": [[46, "fitting-functions"]], "multifit function": [[46, "multifit-function"]], "multifit_func": [[46, "multifit-func"]], "multifit_sqw": [[46, "multifit-sqw"]], "multifit_sqw_sqw": [[46, "multifit-sqw-sqw"]], "Parallel fitting": [[46, "parallel-fitting"]], "Running Horace in Parallel": [[47, "running-horace-in-parallel"]], "Controlling MPI": [[47, "controlling-mpi"]], "Enabling Locally": [[47, "enabling-locally"]], "Enabling Globally": [[47, "enabling-globally"]], "MPI Schemes": [[47, "mpi-schemes"]], "Managing parallel jobs": [[47, "managing-parallel-jobs"]], "Slurm Jobs": [[47, "slurm-jobs"]], "Planning a Horace scan": [[48, "planning-a-horace-scan"]], "horace_planner: a simple scan planner": [[48, "horace-planner-a-simple-scan-planner"]], "More detailed planning of scans": [[48, "more-detailed-planning-of-scans"]], "Plotting": [[49, "plotting"], [66, "plotting"]], "plot": [[49, "plot"]], "smooth": [[49, "smooth"], [50, "smooth"]], "Altering plot characteristics and other useful commands": [[49, "altering-plot-characteristics-and-other-useful-commands"]], "Colour of lines and markers": [[49, "colour-of-lines-and-markers"]], "Line style": [[49, "line-style"]], "Marker style": [[49, "marker-style"]], "Axes Limits": [[49, "axes-limits"]], "Cursor": [[49, "cursor"]], "Keeping plots": [[49, "keeping-plots"]], "One dimensional plots": [[49, "one-dimensional-plots"]], "dd (draw data)": [[49, "dd-draw-data"]], "dl (draw line)": [[49, "dl-draw-line"]], "dm (draw markers)": [[49, "dm-draw-markers"]], "dp (draw points)": [[49, "dp-draw-points"]], "de (draw errors)": [[49, "de-draw-errors"]], "dh (draw histogram)": [[49, "dh-draw-histogram"]], "pd (plot data)": [[49, "pd-plot-data"]], "pl (plot line)": [[49, "pl-plot-line"]], "pm (plot markers)": [[49, "pm-plot-markers"]], "pp (plot points)": [[49, "pp-plot-points"]], "pe (plot errors)": [[49, "pe-plot-errors"]], "ph (plot histogram)": [[49, "ph-plot-histogram"]], "ploc (plot line over current)": [[49, "ploc-plot-line-over-current"]], "pdoc (plot data over current)": [[49, "pdoc-plot-data-over-current"]], "pmoc (plot markers over current)": [[49, "pmoc-plot-markers-over-current"]], "ppoc (plot points over current)": [[49, "ppoc-plot-points-over-current"]], "peoc (plot errors over current)": [[49, "peoc-plot-errors-over-current"]], "phoc": [[49, "phoc"]], "Two dimensional plots": [[49, "two-dimensional-plots"]], "da (draw area)": [[49, "da-draw-area"]], "ds (draw surface)": [[49, "ds-draw-surface"]], "ds2 (draw surface from 2 sources)": [[49, "ds2-draw-surface-from-2-sources"]], "pa (plot area)": [[49, "pa-plot-area"]], "ps (plot surface)": [[49, "ps-plot-surface"]], "ps2 (plot surface from 2 objects)": [[49, "ps2-plot-surface-from-2-objects"]], "spaghetti_plot": [[49, "spaghetti-plot"]], "Three dimensional plots": [[49, "three-dimensional-plots"]], "sliceomatic": [[49, "sliceomatic"]], "sliceomatic_overview": [[49, "sliceomatic-overview"]], "Miscellaneous functions": [[49, "miscellaneous-functions"]], "Other shape functions": [[50, "other-shape-functions"]], "replicate": [[50, "replicate"]], "compact": [[50, "compact"]], "permute": [[50, "permute"]], "mask_points": [[50, "mask-points"]], "mask_runs": [[50, "mask-runs"]], "Loading sqw and dnd objects to memory": [[51, "loading-sqw-and-dnd-objects-to-memory"]], "read_horace": [[51, "read-horace"]], "read_sqw": [[51, "read-sqw"]], "read_dnd": [[51, "read-dnd"]], "Saving sqw objects from memory and creating filebacked objects": [[51, "saving-sqw-objects-from-memory-and-creating-filebacked-objects"]], "save": [[51, "save"]], "Script for correcting sample misalignment": [[52, "script-for-correcting-sample-misalignment"]], "Script for data treatment": [[53, "script-for-data-treatment"]], "Script for fitting": [[54, 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66, 67, 68, 72], "advanc": [3, 5, 10, 11, 24, 26, 31, 37, 41, 42, 68], "plot": [3, 5, 11, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 30, 31, 33, 39, 40, 41, 42, 45, 46, 48, 50, 52, 53, 54, 57, 60, 61, 62, 67, 68, 70, 71], "align": [3, 5, 11, 18, 24, 25, 28, 31, 40, 55, 68], "basic": [3, 11, 21, 24, 31, 35, 56, 62, 66], "usag": [3, 31, 35, 40, 61], "v": [3, 5, 8, 16, 17, 18, 23, 24, 25, 29, 30, 31, 40, 43, 44, 48, 53, 55, 56, 57, 59, 62, 66, 68, 69], "sqw": [3, 5, 10, 11, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 28, 30, 31, 32, 33, 35, 37, 41, 44, 45, 46, 47, 48, 49, 50, 52, 56, 58, 59, 60, 62, 63, 64, 67, 69, 71, 72], "differ": [3, 4, 15, 16, 23, 24, 25, 26, 31, 32, 33, 34, 35, 36, 37, 39, 40, 41, 43, 46, 47, 48, 49, 50, 52, 54, 55, 56, 57, 58, 60, 61, 62, 63, 66, 67, 68, 71], "gpo": [3, 31], "fit": [3, 5, 10, 11, 17, 18, 21, 24, 28, 31, 37, 40, 45, 47, 51, 61, 67, 69, 72], "spinw": [3, 11, 31], "diagnost": [3, 5, 31, 45], "cours": [3, 20, 31, 66, 68], "sampl": [3, 5, 15, 17, 18, 19, 22, 23, 24, 28, 29, 31, 34, 40, 43, 44, 45, 48, 50, 55, 59, 67, 68, 71, 72], "misalign": [3, 5, 17, 18, 24, 29, 31, 45, 67], "simul": [3, 5, 8, 11, 21, 22, 24, 31, 45, 46, 48, 67, 71, 72], "1dfit": [3, 31], "spurion": [3, 23, 24, 31], "gener": [3, 5, 11, 13, 15, 16, 17, 18, 20, 24, 25, 26, 28, 30, 31, 32, 33, 35, 37, 38, 39, 40, 41, 44, 45, 46, 48, 49, 50, 54, 58, 59, 60, 61, 63, 67, 68], "tip": [3, 5, 31], "ha": [4, 6, 8, 15, 17, 21, 23, 24, 29, 31, 32, 36, 37, 38, 39, 40, 42, 43, 44, 46, 47, 48, 49, 50, 55, 58, 60, 62, 66, 68, 69, 70, 71, 72], "onli": [4, 15, 17, 18, 19, 21, 23, 24, 25, 29, 33, 35, 36, 37, 39, 40, 42, 43, 44, 46, 47, 48, 49, 50, 51, 55, 58, 60, 61, 62, 63, 66, 68, 69, 71, 72], "been": [4, 6, 10, 15, 31, 32, 35, 36, 37, 38, 39, 40, 41, 43, 44, 46, 47, 49, 55, 56, 60, 62, 66, 68, 69, 70, 71], "limit": [4, 5, 15, 16, 18, 23, 24, 28, 39, 40, 50, 56, 57, 66, 68, 71], "number": [4, 13, 15, 18, 22, 23, 24, 27, 29, 32, 35, 36, 37, 40, 43, 44, 47, 49, 50, 54, 55, 60, 61, 62, 66, 68, 71, 72], "system": [4, 7, 8, 18, 21, 24, 40, 43, 47, 59, 61, 62, 66, 71, 72], "cannot": [4, 32, 40, 42, 50, 66, 68, 70], "guarante": [4, 70], "work": [4, 5, 8, 11, 13, 15, 17, 18, 19, 21, 24, 25, 29, 32, 33, 40, 48, 49, 52, 58, 60, 61, 62, 66, 68, 70], "plan": [5, 24, 29, 31, 43, 55, 67], "scan": [5, 24, 25, 28, 29, 31, 34, 39, 55], "horace_plann": [5, 59], "simpl": [5, 39, 40, 47, 59, 66, 68, 69, 71, 72], "planner": 5, "file": [5, 11, 13, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 37, 41, 45, 46, 47, 48, 49, 50, 51, 52, 56, 58, 59, 60, 62, 63, 67, 69, 71, 72], "accumulate_sqw": [5, 24, 29, 39, 44, 45, 55], "gen_sqw": [5, 15, 17, 18, 23, 24, 25, 29, 30, 33, 39, 40, 42, 44, 45, 47, 55, 63, 66, 68], "appli": [5, 11, 17, 19, 20, 21, 24, 25, 27, 33, 36, 40, 46, 49, 50, 52, 54, 55, 57, 60, 61, 62, 63, 66, 71, 72], "symmetri": [5, 17, 18, 24, 28, 31, 40, 54, 69], "oper": [5, 8, 11, 15, 17, 21, 29, 31, 32, 35, 37, 38, 40, 42, 45, 46, 47, 50, 51, 53, 61, 63, 68, 69, 71], "entir": [5, 40, 47, 55, 62, 68], "dataset": [5, 8, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 28, 29, 30, 31, 32, 34, 35, 36, 40, 41, 46, 48, 49, 50, 51, 55, 59, 60, 61, 62, 63, 66, 68, 72], "run_inspector": [5, 23, 24, 28, 45], "split": [5, 20, 24, 46], "join": 5, "1": [5, 8, 9, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 36, 37, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 68, 69, 71, 72], "determin": [5, 8, 20, 24, 25, 28, 35, 37, 40, 43, 46, 50, 51, 52, 60, 61, 62, 66, 68, 71, 72], "true": [5, 17, 18, 19, 24, 27, 32, 35, 36, 40, 46, 47, 50, 52, 53, 63, 66, 71, 72], "bragg": [5, 17, 24, 25, 28, 40, 52], "peak": [5, 11, 17, 24, 25, 26, 28, 40, 52, 54, 58, 63, 71, 72], "posit": [5, 17, 23, 24, 25, 28, 34, 36, 40, 43, 44, 46, 48, 49, 50, 52, 53, 54, 57, 60, 62, 63, 68, 71, 72], "2": [5, 8, 9, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 37, 40, 42, 43, 44, 45, 46, 47, 48, 50, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 66, 68, 71, 72], "check": [5, 15, 17, 22, 24, 25, 32, 40, 42, 43, 46, 48, 52, 59, 62, 66, 69, 71], "properli": 5, "3": [5, 8, 9, 11, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 30, 31, 37, 40, 42, 43, 44, 45, 46, 47, 48, 49, 50, 52, 53, 54, 55, 56, 57, 58, 61, 62, 66, 68, 70, 71, 72], "calcul": [5, 11, 17, 21, 23, 27, 35, 36, 37, 40, 42, 43, 46, 47, 48, 54, 60, 63, 66, 68, 72], "4": [5, 8, 11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 34, 37, 40, 41, 43, 44, 47, 49, 50, 52, 54, 55, 56, 58, 61, 62, 66, 68, 71, 72], "exist": [5, 13, 16, 17, 18, 20, 24, 25, 26, 28, 29, 30, 34, 35, 40, 43, 44, 46, 47, 48, 49, 50, 55, 57, 61, 62, 66, 68, 69], "goniomet": [5, 17, 24, 25, 43, 55, 59, 68], "offset": [5, 16, 17, 18, 24, 40, 43, 53, 55, 56, 57, 59, 61, 62, 66, 68], "regener": [5, 24, 25, 55], "": [5, 8, 14, 16, 19, 21, 22, 23, 24, 26, 27, 28, 32, 35, 36, 37, 38, 40, 42, 43, 44, 46, 47, 48, 50, 54, 56, 57, 58, 60, 61, 62, 63, 66, 68, 69, 70, 71, 72], "2a": 5, "mslice": [5, 15, 34], "crystal": [5, 6, 8, 11, 18, 24, 25, 28, 29, 34, 40, 43, 44, 48, 55, 63, 68, 72], "list": [5, 8, 14, 22, 23, 24, 25, 29, 31, 33, 35, 37, 43, 46, 48, 49, 50, 54, 55, 57, 58, 62, 65, 66, 69, 71, 72], "routin": [5, 15, 17, 21, 23, 24, 25, 32, 36, 41, 42, 49, 54, 60, 68, 71, 72], "bragg_posit": [5, 17, 24, 25, 45, 52], "bragg_positions_view": [5, 17, 24, 25, 45, 52], "crystal_pars_correct": [5, 17, 24, 25, 45], "refine_cryst": [5, 17, 24, 25, 45, 52, 69], "ubmatrix": [5, 45], "uv_correct": [5, 45], "rlu_corr_to_lattic": [5, 45], "cut": [5, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 37, 38, 39, 42, 45, 47, 48, 49, 53, 54, 57, 58, 59, 63, 66, 67, 68, 69, 70, 71, 72], "interest": [5, 31, 45, 48, 71], "object": [5, 10, 11, 15, 18, 19, 20, 21, 23, 24, 26, 29, 31, 33, 35, 37, 39, 41, 43, 45, 46, 47, 50, 53, 54, 56, 58, 60, 62, 63, 64, 68, 69, 71, 72], "sourc": [5, 8, 43, 44, 51, 61, 72], "project": 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26, 28, 29, 30, 35, 37, 39, 46, 48, 49, 61, 66, 68, 71], "case": [15, 20, 23, 24, 25, 27, 32, 35, 36, 39, 40, 42, 43, 46, 50, 53, 54, 56, 58, 60, 62, 63, 66, 68, 69, 71, 72], "procedur": [15, 32, 39, 46, 63, 69], "sever": [15, 24, 28, 33, 37, 39, 40, 41, 44, 46, 62, 63, 66, 71], "With": [15, 64, 68], "iter": [15, 40, 46, 54, 71], "closer": 15, "finish": [15, 24, 29, 55], "even": [15, 39, 40, 46, 50, 60, 63, 66], "try": [15, 21, 31, 32, 40, 42, 44, 68, 69, 72], "when": [15, 18, 23, 24, 27, 29, 30, 32, 33, 35, 36, 37, 39, 40, 42, 43, 44, 47, 48, 49, 50, 51, 55, 60, 61, 62, 63, 66, 68, 72], "task": [15, 32, 37, 47, 68], "ctrl": 15, "alt": 15, "delet": [15, 16, 24, 29, 32, 37, 40, 43, 47, 57, 68], "involv": [15, 19, 62, 66], "still": [15, 20, 24, 32, 39, 40, 43, 61, 66, 69, 70, 71], "thing": [15, 16, 21, 24, 32, 35, 40, 59, 63, 66, 68], "success": [15, 68, 70], "restart": [15, 71], "reboot": 15, "similarli": [15, 39, 40, 46, 71], "There": [15, 23, 39, 40, 43, 44, 60, 62, 63, 66, 68, 70, 71], "varieti": [15, 36, 60, 62], "caus": [15, 24, 28, 40], "some": [15, 16, 18, 19, 20, 21, 23, 24, 25, 26, 28, 29, 30, 32, 35, 36, 40, 42, 43, 44, 46, 47, 54, 55, 56, 57, 58, 60, 61, 62, 63, 66, 67, 68, 71, 72], "understood": 15, "tmp": [15, 16, 18, 20, 24, 25, 26, 28, 29, 30, 37, 47, 66, 68], "corrupt": 15, "littl": [15, 48, 50, 63, 68, 72], "redo": 15, "ref": [15, 16, 18, 20, 24, 25, 26, 28, 29, 30, 66, 72], "one": [15, 17, 19, 24, 29, 33, 34, 35, 37, 39, 40, 41, 43, 44, 46, 47, 48, 49, 50, 56, 59, 60, 61, 62, 64, 66, 68, 69, 70, 71, 72], "without": [15, 16, 18, 23, 24, 32, 35, 39, 40, 49, 50, 51, 55, 60, 66, 68, 71, 72], "write_nsqw_to_sqw": [15, 32, 66], "list_of_funct": [15, 66], "spe": [15, 18, 20, 23, 24, 29, 41, 43, 55, 61, 66, 68], "add_sp": 15, "inconsist": 15, "yet": [15, 24, 29, 39, 55], "down": [15, 22, 23, 41, 47, 48, 49, 68, 71], "NOT": [15, 35, 62, 66], "out": [15, 17, 20, 23, 24, 25, 28, 29, 30, 33, 38, 43, 48, 50, 52, 55, 57, 63, 66, 68, 71], "rather": [15, 18, 24, 33, 34, 35, 40, 43, 46, 48, 61, 62, 66, 68, 69, 71], "separ": [15, 21, 24, 30, 37, 40, 42, 44, 47, 48, 55, 68, 71], "assign": [15, 37, 72], "valu": [15, 17, 18, 19, 21, 22, 23, 24, 25, 27, 29, 32, 35, 36, 37, 39, 40, 42, 43, 44, 46, 48, 49, 50, 55, 57, 60, 62, 63, 66, 68, 71, 72], "ei": [15, 16, 22, 24, 27, 57, 63, 71, 72], "psi": [15, 18, 23, 24, 29, 30, 39, 42, 43, 44, 48, 55, 59, 62, 66, 68], "recalcul": [15, 39], "errorbar": [15, 16, 24, 49, 50, 54, 56, 57, 66, 68], "edatc_fold": [16, 18, 20, 24, 25, 26, 28, 29, 30], "output_data_fold": [16, 18, 20, 24, 25, 26, 28, 29, 30], "edatc": [16, 18, 20, 24, 25, 26, 28, 29, 30], "http": [16, 18, 20, 24, 25, 26, 28, 29, 30, 44, 72], "com": [16, 18, 20, 24, 25, 26, 28, 29, 30], "archiv": [16, 18, 20, 24, 25, 26, 28, 29, 30, 32], "main": [16, 18, 20, 24, 25, 26, 28, 29, 30, 36, 40, 43, 48, 61, 68, 70], "And": [16, 18, 20, 24, 25, 26, 28, 29, 30, 62, 69], "put": [16, 18, 20, 24, 25, 26, 28, 29, 30, 34, 49, 57, 60, 62, 66, 68, 69, 71], "unzip": 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55, 57, 62, 66, 68, 69, 71], "public": [16, 24, 67], "qualiti": [16, 24, 39, 67], "figur": [16, 18, 21, 23, 24, 25, 28, 40, 45, 49, 56, 60, 67, 70], "clear": [16, 18, 24, 25, 26, 29, 34, 39, 40, 46, 49, 66], "variabl": [16, 18, 24, 25, 26, 29, 37, 40, 47, 49, 51, 66, 68, 71, 72], "sqw_file": [16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 28, 29, 30, 43, 49, 52, 53, 55, 56, 57, 59, 62, 66, 68, 71], "rlp": [16, 24, 26, 58, 60], "wspag": [16, 24], "qbin": [16, 24], "qwidth": [16, 24, 69], "ebin": [16, 24, 60], "250": [16, 18, 20, 24, 56], "lz": [16, 17, 18, 19, 20, 21, 23, 24, 28, 49, 56, 57, 66, 68], "recreat": [16, 24], "q": [16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 34, 39, 40, 42, 43, 44, 46, 48, 49, 53, 54, 56, 58, 60, 61, 62, 63, 66, 68, 71, 72], "earlier": [16, 24, 68, 69, 71], "pixel": [16, 18, 19, 21, 23, 24, 26, 32, 35, 36, 37, 38, 39, 40, 42, 46, 49, 50, 56, 58, 59, 60, 61, 62, 63, 66, 68, 71, 72], "line_proj": [16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 28, 30, 42, 47, 48, 61, 68, 69, 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"for-developers"], [14, "for-developers"]], "Example Scripts": [[3, "example-scripts"]], "Horace Example Scripts": [[3, null]], "General disclaimer": [[4, "general-disclaimer"]], "Horace Manual": [[5, "horace-manual"]], "Horace Manual Appendix": [[5, null]], "How to cite Horace": [[6, "how-to-cite-horace"]], "Introduction and Setup": [[7, "introduction-and-setup"]], "Papers citing Horace": [[8, "papers-citing-horace"]], "2010": [[8, "id1"]], "2011": [[8, "id2"]], "2012": [[8, "id3"]], "2013": [[8, "id4"]], "2014": [[8, "id5"]], "2015": [[8, "id6"]], "2016": [[8, "id7"]], "2017": [[8, "id8"]], "2018": [[8, "id9"]], "Previous Versions": [[9, "previous-versions"]], "Unsorted Manual Pages": [[10, "unsorted-manual-pages"]], "User\u2019s Guide": [[11, "user-s-guide"]], "User's Guide": [[11, null]], "Become a developer": [[12, "become-a-developer"]], "Developer info": [[13, "developer-info"]], "Github": [[13, "github"]], "Horace configuration on isiscompute & iDaaaS servers": [[13, "horace-configuration-on-isiscompute-idaaas-servers"]], "Building Horace distribution kit": [[13, "building-horace-distribution-kit"]], "Getting started": [[14, "getting-started"], [68, "getting-started"]], "Known bugs": [[15, "known-bugs"]], "Current issues": [[15, "current-issues"]], "Symmetrisation problem with dnd data": [[15, "symmetrisation-problem-with-dnd-data"]], "Broken pipe error": [[15, "broken-pipe-error"]], "Fatal Read Error": [[15, "fatal-read-error"]], "Advanced Plotting": [[16, "advanced-plotting"]], "Align and Symmetrise": [[17, "align-and-symmetrise"]], "Basic Usage": [[18, "basic-usage"]], "Corrections": [[19, "corrections"]], "Data Corrections": [[20, "data-corrections"]], "dnd vs sqw: the difference": [[21, "dnd-vs-sqw-the-difference"]], "General principle": [[21, "general-principle"]], "Specific case A: resolution modelling": [[21, "specific-case-a-resolution-modelling"]], "Specific case B: spurion identification": [[21, "specific-case-b-spurion-identification"]], "Specific case C: smoothing": [[21, "specific-case-c-smoothing"]], "Specific case D: symmetrisation": [[21, "specific-case-d-symmetrisation"]], "Whole Script": [[21, "whole-script"]], "GPO fitting SpinW": [[22, "gpo-fitting-spinw"]], "Horace Diagnostics": [[23, "horace-diagnostics"]], "Generating data": [[23, "generating-data"], [23, "id1"]], "Run inspector": [[23, "run-inspector"]], "Understanding data from a single orientation": [[23, "understanding-data-from-a-single-orientation"]], "coordinates_calc": [[23, "coordinates-calc"]], "hkle": [[23, "hkle"]], "Putting it all together": [[23, "putting-it-all-together"]], "Whole script": [[23, "whole-script"]], "Horace course": [[24, "horace-course"]], "Sample Misalignment": [[25, "sample-misalignment"]], "Simulation Fitting": [[26, "simulation-fitting"]], "Spinw GPO 1dfit": [[27, "spinw-gpo-1dfit"]], "Spurions": [[28, "spurions"]], "SQW Generation tips": [[29, "sqw-generation-tips"]], "Symmetrisation": [[30, "symmetrisation"], [69, "symmetrisation"], [70, "symmetrisation"]], "Horace: visualising and manipulating S(\\mathbf{Q},\\omega) measured in all four dimensions": [[31, "horace-visualising-and-manipulating-s-mathbf-q-omega-measured-in-all-four-dimensions"]], "Download and setup": [[32, "download-and-setup"]], "System Requirements": [[32, "system-requirements"]], "Download": [[32, "download"]], "Installation Instructions": [[32, "installation-instructions"]], "Standard Matlab install": [[32, "standard-matlab-install"]], "Installing the latest version": [[32, "installing-the-latest-version"]], "CMake install": [[32, "cmake-install"]], "Horace Configuration": [[32, "horace-configuration"]], "High Performance Computing Configuration": [[32, "high-performance-computing-configuration"]], "Troubleshooting": [[32, "troubleshooting"]], "Support and updates": [[33, "support-and-updates"]], "Support": [[33, "support"]], "Updates": [[33, "updates"]], "The Horace Rationale": [[34, "the-horace-rationale"]], "Advanced Multifit": [[35, "advanced-multifit"]], "Multifit methods requirements": [[35, "multifit-methods-requirements"]], "Fit functions": [[35, "fit-functions"]], "Utility methods": [[35, "utility-methods"]], "mask": [[35, "mask"], [50, "mask"]], "mask_points [optional]": [[35, "mask-points-optional"]], "sigvar_get": [[35, "sigvar-get"]], "sigvar_getx [optional]": [[35, "sigvar-getx-optional"]], "plus [optional]": [[35, "plus-optional"]], "Binary operations": [[36, "binary-operations"], [66, "binary-operations"]], "Introduction": [[36, "introduction"], [63, "introduction"]], "sqw objects": [[36, "sqw-objects"]], "Single sqw object": [[36, "single-sqw-object"]], "Array of sqw objects": [[36, "array-of-sqw-objects"]], "dnd objects": [[36, "dnd-objects"]], "Single dnd object": [[36, "single-dnd-object"]], "Array of dnd objects": [[36, "array-of-dnd-objects"]], "Tips and Tricks": [[36, "tips-and-tricks"]], "List of operations and their equivalent code": [[36, "list-of-operations-and-their-equivalent-code"]], "Binary operations manager": [[36, "binary-operations-manager"]], "Changing Horace settings": [[37, "changing-horace-settings"]], "Horace Config": [[37, "horace-config"]], "HPC Config": [[37, "hpc-config"]], "Parallel Config": [[37, "parallel-config"]], "Changing object type": [[38, "changing-object-type"]], "sqw": [[38, "sqw"]], "dnd": [[38, "dnd"]], "IX_datasets": [[38, "ix-datasets"]], "Correcting for sample misalignment": [[39, "correcting-for-sample-misalignment"]], "Step 1 - determining the true Bragg peak positions": [[39, "step-1-determining-the-true-bragg-peak-positions"]], "Bragg Positions": [[39, "bragg-positions"]], "Step 2 - check the Bragg positions fits worked properly": [[39, "step-2-check-the-bragg-positions-fits-worked-properly"]], "Step 3 - calculate the misalignment correction": [[39, "step-3-calculate-the-misalignment-correction"]], "Step 4 - apply the correction to the data": [[39, "step-4-apply-the-correction-to-the-data"]], "Option 1 : apply the correction to an existing sqw file": [[39, "option-1-apply-the-correction-to-an-existing-sqw-file"]], "Option 2 : calculate goniometer offsets for regeneration of sqw file(s)": [[39, "option-2-calculate-goniometer-offsets-for-regeneration-of-sqw-file-s"]], "Option 2a (for use with e.g. Mslice): calculate the true u and v for your misaligned crystal": [[39, "option-2a-for-use-with-e-g-mslice-calculate-the-true-u-and-v-for-your-misaligned-crystal"]], "List of alignment correction routines": [[39, "list-of-alignment-correction-routines"]], "bragg_positions": [[39, "id1"]], "bragg_positions_view": [[39, "bragg-positions-view"]], "crystal_pars_correct": [[39, "crystal-pars-correct"]], "refine_crystal": [[39, "refine-crystal"]], "ubmatrix": [[39, "ubmatrix"]], "uv_correct": [[39, "uv-correct"]], "rlu_corr_to_lattice": [[39, "rlu-corr-to-lattice"]], "Cutting data of interest from SQW files and objects": [[40, "cutting-data-of-interest-from-sqw-files-and-objects"]], "cut": [[40, "cut"], [50, "cut"]], "Data Source": [[40, "datasource"]], "Projection (proj)": [[40, "projection-proj"]], "Binning arguments": [[40, "binning-arguments"]], "File- and memory-backed cuts": [[40, "file-and-memory-backed-cuts"]], "Projection in more detail": [[40, "projection-in-more-detail"]], "Lattice based projections (line_proj)": [[40, "lattice-based-projections-line-proj"]], "Non-orthogonal axes": [[40, "non-orthogonal-axes"]], "line_proj 2D cut examples: Fe Scattering Function": [[40, "line-proj-2d-cut-examples-fe-scattering-function"]], "line_proj 1D cut example": [[40, "line-proj-1d-cut-example"]], "Spherical Projections": [[40, "spherical-projections"]], "sphere_proj 2D and 1D cuts examples:": [[40, "sphere-proj-2d-and-1d-cuts-examples"]], "Cylindrical Projections": [[40, "cylindrical-projections"]], "cylinder_proj 2D and 1D cuts examples:": [[40, "cylinder-proj-2d-and-1d-cuts-examples"]], "Additional notes": [[40, "additional-notes"]], "Auto-binning algorithm": [[40, "auto-binning-algorithm"]], "Legacy calls to cut: cut_sqw and cut_dnd": [[40, "legacy-calls-to-cut-cut-sqw-and-cut-dnd"]], "section": [[40, "section"], [50, "section"]], "Data diagnostics": [[41, "data-diagnostics"]], "run_inspector": [[41, "run-inspector"]], "split": [[41, "split"]], "join": [[41, "join"]], "FAQ": [[42, "faq"]], "Can I include more than one data file (spe/nxspe) with the same experimental configuration in an sqw file?": [[42, "can-i-include-more-than-one-data-file-spe-nxspe-with-the-same-experimental-configuration-in-an-sqw-file"]], "What is the difference between sqw and dnd objects": [[42, "what-is-the-difference-between-sqw-and-dnd-objects"]], "Summary": [[42, "summary"]], "Memory requirements": [[42, "memory-requirements"]], "Implications for simulations and fitting": [[42, "implications-for-simulations-and-fitting"]], "I\u2019ve got a problem and I can\u2019t find figure out how to solve it from the information on this website!": [[42, "i-ve-got-a-problem-and-i-can-t-find-figure-out-how-to-solve-it-from-the-information-on-this-website"]], "Generating SQW files": [[43, "generating-sqw-files"]], "accumulate_sqw": [[43, "accumulate-sqw"]], "gen_sqw": [[43, "gen-sqw"], [62, "gen-sqw"]], "Applying symmetry operations to an entire dataset": [[43, "applying-symmetry-operations-to-an-entire-dataset"]], "Input file formats": [[44, "input-file-formats"]], ".nxspe file": [[44, "nxspe-file"]], "gen_nxspe": [[44, "gen-nxspe"]], ".spe file and .par file": [[44, "spe-file-and-par-file"]], ".spe file format": [[44, "spe-file-format"]], ".par file format": [[44, "par-file-format"]], "List of functions": [[45, "list-of-functions"]], "Multifit": [[46, "multifit"], [69, "multifit"]], "Overview": [[46, "overview"]], "Introduction to setting up and performing a fit": [[46, "introduction-to-setting-up-and-performing-a-fit"]], "Simple fitting": [[46, "simple-fitting"]], "Background functions": [[46, "background-functions"]], "Binding parameters": [[46, "binding-parameters"]], "Semi-global fits": [[46, "semi-global-fits"]], "Summary of commands with multifit": [[46, "summary-of-commands-with-multifit"]], "Fitting functions": [[46, "fitting-functions"]], "multifit function": [[46, "multifit-function"]], "multifit_func": [[46, "multifit-func"]], "multifit_sqw": [[46, "multifit-sqw"]], "multifit_sqw_sqw": [[46, "multifit-sqw-sqw"]], "Parallel fitting": [[46, "parallel-fitting"]], "Running Horace in Parallel": [[47, "running-horace-in-parallel"]], "Controlling MPI": [[47, "controlling-mpi"]], "Enabling Locally": [[47, "enabling-locally"]], "Enabling Globally": [[47, "enabling-globally"]], "MPI Schemes": [[47, "mpi-schemes"]], "Managing parallel jobs": [[47, "managing-parallel-jobs"]], "Slurm Jobs": [[47, "slurm-jobs"]], "Planning a Horace scan": [[48, "planning-a-horace-scan"]], "horace_planner: a simple scan planner": [[48, "horace-planner-a-simple-scan-planner"]], "More detailed planning of scans": [[48, "more-detailed-planning-of-scans"]], "Plotting": [[49, "plotting"], [66, "plotting"]], "plot": [[49, "plot"]], "smooth": [[49, "smooth"], [50, "smooth"]], "Altering plot characteristics and other useful commands": [[49, "altering-plot-characteristics-and-other-useful-commands"]], "Colour of lines and markers": [[49, "colour-of-lines-and-markers"]], "Line style": [[49, "line-style"]], "Marker style": [[49, "marker-style"]], "Axes Limits": [[49, "axes-limits"]], "Cursor": [[49, "cursor"]], "Keeping plots": [[49, "keeping-plots"]], "One dimensional plots": [[49, "one-dimensional-plots"]], "dd (draw data)": [[49, "dd-draw-data"]], "dl (draw line)": [[49, "dl-draw-line"]], "dm (draw markers)": [[49, "dm-draw-markers"]], "dp (draw points)": [[49, "dp-draw-points"]], "de (draw errors)": [[49, "de-draw-errors"]], "dh (draw histogram)": [[49, "dh-draw-histogram"]], "pd (plot data)": [[49, "pd-plot-data"]], "pl (plot line)": [[49, "pl-plot-line"]], "pm (plot markers)": [[49, "pm-plot-markers"]], "pp (plot points)": [[49, "pp-plot-points"]], "pe (plot errors)": [[49, "pe-plot-errors"]], "ph (plot histogram)": [[49, "ph-plot-histogram"]], "ploc (plot line over current)": [[49, "ploc-plot-line-over-current"]], "pdoc (plot data over current)": [[49, "pdoc-plot-data-over-current"]], "pmoc (plot markers over current)": [[49, "pmoc-plot-markers-over-current"]], "ppoc (plot points over current)": [[49, "ppoc-plot-points-over-current"]], "peoc (plot errors over current)": [[49, "peoc-plot-errors-over-current"]], "phoc": [[49, "phoc"]], "Two dimensional plots": [[49, "two-dimensional-plots"]], "da (draw area)": [[49, "da-draw-area"]], "ds (draw surface)": [[49, "ds-draw-surface"]], "ds2 (draw surface from 2 sources)": [[49, "ds2-draw-surface-from-2-sources"]], "pa (plot area)": [[49, "pa-plot-area"]], "ps (plot surface)": [[49, "ps-plot-surface"]], "ps2 (plot surface from 2 objects)": [[49, "ps2-plot-surface-from-2-objects"]], "spaghetti_plot": [[49, "spaghetti-plot"]], "Three dimensional plots": [[49, "three-dimensional-plots"]], "sliceomatic": [[49, "sliceomatic"]], "sliceomatic_overview": [[49, "sliceomatic-overview"]], "Miscellaneous functions": [[49, "miscellaneous-functions"]], "Other shape functions": [[50, "other-shape-functions"]], "replicate": [[50, "replicate"]], "compact": [[50, "compact"]], "permute": [[50, "permute"]], "mask_points": [[50, "mask-points"]], "mask_runs": [[50, "mask-runs"]], "Loading sqw and dnd objects to memory": [[51, "loading-sqw-and-dnd-objects-to-memory"]], "read_horace": [[51, "read-horace"]], "read_sqw": [[51, "read-sqw"]], "read_dnd": [[51, "read-dnd"]], "Saving sqw objects from memory and creating filebacked objects": [[51, "saving-sqw-objects-from-memory-and-creating-filebacked-objects"]], "save": [[51, "save"]], "Script for correcting sample misalignment": [[52, "script-for-correcting-sample-misalignment"]], "Script for data treatment": [[53, "script-for-data-treatment"]], "Script for fitting": [[54, "script-for-fitting"]], "Script for generating sqw files": [[55, "script-for-generating-sqw-files"]], "Script for making cuts and plotting": [[56, "script-for-making-cuts-and-plotting"]], "Script for making publication quality figures": [[57, "script-for-making-publication-quality-figures"]], "Script for making simulations": [[58, "script-for-making-simulations"]], "Simulations": [[58, "simulations"], [68, "simulations"]], "Plotting dispersion": [[58, "plotting-dispersion"]], "Script for planning an experiment": [[59, "script-for-planning-an-experiment"]], "Simulation": [[60, "simulation"]], "func_eval": [[60, "func-eval"]], "sqw_eval": [[60, "sqw-eval"]], "dispersion": [[60, "dispersion"]], "disp2sqw_eval": [[60, "disp2sqw-eval"]], "dispersion_plot": [[60, "dispersion-plot"]], "disp2sqw_plot": [[60, "disp2sqw-plot"]], "Special SQW information from sqw objects and files": [[61, "special-sqw-information-from-sqw-objects-and-files"]], "head": [[61, "head"]], "legacy equivalents of head": [[61, "legacy-equivalents-of-head"]], "xye": [[61, "xye"]], "save_xye": [[61, "save-xye"]], "Symmetry Operations": [[62, "symmetry-operations"]], "Symmetry Operators": [[62, "symmetry-operators"]], "Reflections": [[62, "reflections"]], "Rotations": [[62, "rotations"]], "General Transformations": [[62, "general-transformations"]], "Groups of symmetry operators": [[62, "groups-of-symmetry-operators"]], "Irreducible region": [[62, "irreducible-region"]], "Commands for cuts and slices": [[62, "commands-for-cuts-and-slices"]], "Symmetrising": [[62, "symmetrising"]], "symmetrise_sqw": [[62, "symmetrise-sqw"]], "Cutting": [[62, "cutting"]], "Combining": [[62, "combining"]], "Rebinning": [[62, "rebinning"]], "Symmetrise data, then unfold back to original range": [[62, "symmetrise-data-then-unfold-back-to-original-range"]], "Limitations": [[62, "limitations"]], "Symop Methods - Advanced": [[62, "symop-methods-advanced"]], "transform_vec": [[62, "transform-vec"]], "transform_pix": [[62, "transform-pix"]], "transform_proj": [[62, "transform-proj"]], "Tobyfit": [[63, "tobyfit"]], "Performing resolution convolution": [[63, "performing-resolution-convolution"]], "Setting the sample and instrument information": [[63, "setting-the-sample-and-instrument-information"]], "Fitting data": [[63, "fitting-data"]], "Controlling number of Monte Carlo points": [[63, "controlling-number-of-monte-carlo-points"]], "Controlling which contributions to include in the resolution function": [[63, "controlling-which-contributions-to-include-in-the-resolution-function"]], "Unary operations": [[64, "unary-operations"], [66, "unary-operations"]], "unary plus": [[64, "unary-plus"]], "unary minus": [[64, "unary-minus"]], "Trigonometric and hyperbolic functions": [[64, "trigonometric-and-hyperbolic-functions"]], "Other mathematical functions": [[64, "other-mathematical-functions"]], "Example New Page": [[65, "example-new-page"]], "Section Title": [[65, "section-title"]], "Subsection Title": [[65, "subsection-title"]], "Advanced use": [[66, "advanced-use"]], "Preamble": [[66, "preamble"]], "Help": [[66, "help"]], "Creating an object from scratch": [[66, "creating-an-object-from-scratch"]], "Reading and writing to file": [[66, "reading-and-writing-to-file"]], "Obtaining information about objects": [[66, "obtaining-information-about-objects"]], "Reformatting the data": [[66, "reformatting-the-data"]], "Simulating": [[66, "simulating"]], "Fitting": [[66, "fitting"], [68, "fitting"]], "SQW generation and manipulation": [[66, "sqw-generation-and-manipulation"]], "Example scripts": [[67, "example-scripts"]], "Creating an SQW file": [[68, "creating-an-sqw-file"]], "Example": [[68, "example"]], "Data visualisation": [[68, "data-visualisation"]], "Basic data manipulation": [[68, "basic-data-manipulation"]], "Process": [[68, "process"]], "Gaussian Profile Peaks": [[68, "gaussian-profile-peaks"]], "3D Heisenberg Ferromagnet": [[68, "d-heisenberg-ferromagnet"]], "Apply": [[68, "apply"]], "Converting from Horace 3 to Horace 4": [[69, "converting-from-horace-3-to-horace-4"]], "Projections": [[69, "projections"]], "Spaghetti Plot": [[69, "spaghetti-plot"]], "Crystal Alignment": [[69, "crystal-alignment"]], "Deprecated Functions": [[69, "deprecated-functions"]], "Horace GUI": [[70, "horace-gui"]], "Using the GUI": [[70, "using-the-gui"]], "Generate SQW file tab": [[70, "generate-sqw-file-tab"]], "Data on file tab": [[70, "data-on-file-tab"]], "Data in memory tab": [[70, "data-in-memory-tab"]], "Binary Operations": [[70, "binary-operations"]], "Unary Operations": [[70, "unary-operations"]], "Interfacing with other programs": [[71, "interfacing-with-other-programs"]], "Contents": [[71, "contents"], [71, "id1"], [72, "contents"]], "Recap on evaluating functions on a Horace workspace": [[71, "recap-on-evaluating-functions-on-a-horace-workspace"]], "Energy convolution": [[71, "energy-convolution"]], "Euphonic example": [[71, "euphonic-example"]], "Installing Euphonic": [[71, "installing-euphonic"]], "Running a Euphonic calculation with Horace": [[71, "running-a-euphonic-calculation-with-horace"]], "Fitting data with Euphonic and Horace": [[71, "fitting-data-with-euphonic-and-horace"]], "SpinW example": [[71, "spinw-example"]], "Installing SpinW": [[71, "installing-spinw"]], "Running a SpinW calculation with Horace": [[71, "running-a-spinw-calculation-with-horace"]], "Worked example with resolution convolution": [[71, "worked-example-with-resolution-convolution"]], "Generic interface": [[71, "generic-interface"]], "Matlab function": [[71, "matlab-function"]], "Python function": [[71, "python-function"]], "C / C++ / Fortran function": [[71, "c-c-fortran-function"]], "Prerequisites": [[71, "prerequisites"]], "C example": [[71, "c-example"]], "C++ example": [[71, "id2"]], "Fortran example": [[71, "fortran-example"]], "Resolution Convolution": [[72, "resolution-convolution"]], "Using tobyfit": [[72, "using-tobyfit"]], "A worked example": [[72, "a-worked-example"]], "Plotting resolution ellipsoids": [[72, "plotting-resolution-ellipsoids"]], "Background Theory": [[72, "background-theory"]], "References": [[72, "references"]]}, "indexentries": {}})
\ No newline at end of file
diff --git a/unstable/user_guide/Advanced_use.html b/unstable/user_guide/Advanced_use.html
index ec3883612b..f20973cd08 100644
--- a/unstable/user_guide/Advanced_use.html
+++ b/unstable/user_guide/Advanced_use.html
@@ -590,7 +590,7 @@ SQW generation and manipulation
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/user_guide/Example_scripts.html b/unstable/user_guide/Example_scripts.html
index 629324bdb9..c3afe2af15 100644
--- a/unstable/user_guide/Example_scripts.html
+++ b/unstable/user_guide/Example_scripts.html
@@ -103,7 +103,7 @@ Example scripts
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/user_guide/Getting_started.html b/unstable/user_guide/Getting_started.html
index d0bc0a4322..27ea5d8408 100644
--- a/unstable/user_guide/Getting_started.html
+++ b/unstable/user_guide/Getting_started.html
@@ -750,7 +750,7 @@ Fitting
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/user_guide/Horace3_to_4.html b/unstable/user_guide/Horace3_to_4.html
index bd8f582c1f..bbb9f65242 100644
--- a/unstable/user_guide/Horace3_to_4.html
+++ b/unstable/user_guide/Horace3_to_4.html
@@ -55,6 +55,7 @@
- Converting from Horace 3 to Horace 4
- Projections
- Symmetrisation
+- Spaghetti Plot
- Crystal Alignment
- Multifit
- Deprecated Functions
@@ -153,6 +154,12 @@ SymmetrisationSymop
, however, it is still best to
switch.
+
+Spaghetti Plot
+qwidth in spaghetti_plot arguments now correctly refers to a full-width of the perpendicular
+bins. This means that to achieve the same results in Horace 4 as Horace 3, a user-specified
+qwidth should be twice as large. Default qwidths have been updated to reflect this change.
+
Crystal Alignment
Crystal alignment in Horace 4 has changed slightly in that only one
@@ -345,7 +352,7 @@
Deprecated Functions
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/user_guide/Horace_GUI.html b/unstable/user_guide/Horace_GUI.html
index 19f63ad2ec..c5e825dea3 100644
--- a/unstable/user_guide/Horace_GUI.html
+++ b/unstable/user_guide/Horace_GUI.html
@@ -158,7 +158,7 @@ Unary Operations
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/user_guide/Interfacing_with_other_programs.html b/unstable/user_guide/Interfacing_with_other_programs.html
index 54b6677051..7351fcd877 100644
--- a/unstable/user_guide/Interfacing_with_other_programs.html
+++ b/unstable/user_guide/Interfacing_with_other_programs.html
@@ -903,7 +903,7 @@ Fortran example<
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.
diff --git a/unstable/user_guide/Resolution_convolution.html b/unstable/user_guide/Resolution_convolution.html
index 8990ea264a..daf2d15c89 100644
--- a/unstable/user_guide/Resolution_convolution.html
+++ b/unstable/user_guide/Resolution_convolution.html
@@ -489,7 +489,7 @@ References
© Copyright 2006-2024, STFC RAL.
- Last updated on Jul 4, 2024, 5:47:05 PM.
+ Last updated on Jul 8, 2024, 9:13:45 AM.