From 7d1b6098986145ab05f7d6375e17974150e4d123 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 2 Sep 2024 18:56:18 +0000 Subject: [PATCH 1/2] Bump pyo3 from 0.19.2 to 0.22.2 Bumps [pyo3](https://github.com/pyo3/pyo3) from 0.19.2 to 0.22.2. - [Release notes](https://github.com/pyo3/pyo3/releases) - [Changelog](https://github.com/PyO3/pyo3/blob/main/CHANGELOG.md) - [Commits](https://github.com/pyo3/pyo3/compare/v0.19.2...v0.22.2) --- updated-dependencies: - dependency-name: pyo3 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- Cargo.lock | 105 +++++++++++++++++------------------------------------ Cargo.toml | 2 +- 2 files changed, 34 insertions(+), 73 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 174e14a..89f9858 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -62,12 +62,6 @@ version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "597bb81c80a54b6a4381b23faba8d7774b144c94cbd1d6fe3f1329bd776554ab" -[[package]] -name = "bitflags" -version = "2.6.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b048fb63fd8b5923fc5aa7b340d8e156aec7ec02f0c78fa8a6ddc2613f6f71de" - [[package]] name = "buffer-redux" version = "1.0.2" @@ -258,6 +252,12 @@ version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" +[[package]] +name = "heck" +version = "0.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea" + [[package]] name = "histogram" version = "0.11.0" @@ -292,9 +292,9 @@ dependencies = [ [[package]] name = "indoc" -version = "1.0.9" +version = "2.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bfa799dd5ed20a7e349f3b4639aa80d74549c81716d9ec4f994c9b5815598306" +checksum = "b248f5224d1d606005e02c97f5aa4e88eeb230488bcc03bc9ca4d7991399f2b5" [[package]] name = "inplace-vec-builder" @@ -356,16 +356,6 @@ version = "0.2.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" -[[package]] -name = "lock_api" -version = "0.4.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17" -dependencies = [ - "autocfg", - "scopeguard", -] - [[package]] name = "log" version = "0.4.22" @@ -556,7 +546,7 @@ version = "0.18.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "39b0deead1528fd0e5947a8546a9642a9777c25f6e1e26f34c97b204bbb465bd" dependencies = [ - "heck", + "heck 0.4.1", "itertools 0.12.1", "proc-macro2", "proc-macro2-diagnostics", @@ -573,29 +563,6 @@ dependencies = [ "sourmash", ] -[[package]] -name = "parking_lot" -version = "0.12.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" -dependencies = [ - "lock_api", - "parking_lot_core", -] - -[[package]] -name = "parking_lot_core" -version = "0.9.10" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8" -dependencies = [ - "cfg-if", - "libc", - "redox_syscall", - "smallvec", - "windows-targets", -] - [[package]] name = "paste" version = "1.0.15" @@ -618,6 +585,12 @@ dependencies = [ "thiserror", ] +[[package]] +name = "portable-atomic" +version = "1.7.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "da544ee218f0d287a911e9c99a39a8c9bc8fcad3cb8db5959940044ecfc67265" + [[package]] name = "ppv-lite86" version = "0.2.20" @@ -684,16 +657,17 @@ dependencies = [ [[package]] name = "pyo3" -version = "0.19.2" +version = "0.22.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e681a6cfdc4adcc93b4d3cf993749a4552018ee0a9b65fc0ccfad74352c72a38" +checksum = "831e8e819a138c36e212f3af3fd9eeffed6bf1510a805af35b0edee5ffa59433" dependencies = [ "anyhow", "cfg-if", "indoc", "libc", "memoffset", - "parking_lot", + "once_cell", + "portable-atomic", "pyo3-build-config", "pyo3-ffi", "pyo3-macros", @@ -702,9 +676,9 @@ dependencies = [ [[package]] name = "pyo3-build-config" -version = "0.19.2" +version = "0.22.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "076c73d0bc438f7a4ef6fdd0c3bb4732149136abd952b110ac93e4edb13a6ba5" +checksum = "1e8730e591b14492a8945cdff32f089250b05f5accecf74aeddf9e8272ce1fa8" dependencies = [ "once_cell", "target-lexicon", @@ -712,9 +686,9 @@ dependencies = [ [[package]] name = "pyo3-ffi" -version = "0.19.2" +version = "0.22.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e53cee42e77ebe256066ba8aa77eff722b3bb91f3419177cf4cd0f304d3284d9" +checksum = "5e97e919d2df92eb88ca80a037969f44e5e70356559654962cbb3316d00300c6" dependencies = [ "libc", "pyo3-build-config", @@ -722,25 +696,27 @@ dependencies = [ [[package]] name = "pyo3-macros" -version = "0.19.2" +version = "0.22.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dfeb4c99597e136528c6dd7d5e3de5434d1ceaf487436a3f03b2d56b6fc9efd1" +checksum = "eb57983022ad41f9e683a599f2fd13c3664d7063a3ac5714cae4b7bee7d3f206" dependencies = [ "proc-macro2", "pyo3-macros-backend", "quote", - "syn 1.0.109", + "syn 2.0.77", ] [[package]] name = "pyo3-macros-backend" -version = "0.19.2" +version = "0.22.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "947dc12175c254889edc0c02e399476c2f652b4b9ebd123aa655c224de259536" +checksum = "ec480c0c51ddec81019531705acac51bcdbeae563557c982aa8263bb96880372" dependencies = [ + "heck 0.5.0", "proc-macro2", + "pyo3-build-config", "quote", - "syn 1.0.109", + "syn 2.0.77", ] [[package]] @@ -798,15 +774,6 @@ version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" -[[package]] -name = "redox_syscall" -version = "0.5.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2a908a6e00f1fdd0dfd9c0eb08ce85126f6d8bbda50017e74bc4a4b7d4a926a4" -dependencies = [ - "bitflags", -] - [[package]] name = "roaring" version = "0.10.6" @@ -838,12 +805,6 @@ dependencies = [ "bytemuck", ] -[[package]] -name = "scopeguard" -version = "1.2.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49" - [[package]] name = "serde" version = "1.0.209" @@ -1073,9 +1034,9 @@ checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b" [[package]] name = "unindent" -version = "0.1.11" +version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e1766d682d402817b5ac4490b3c3002d91dfa0d22812f341609f97b08757359c" +checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce" [[package]] name = "vec-collections" diff --git a/Cargo.toml b/Cargo.toml index b07f19d..d23f187 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -9,6 +9,6 @@ name = "oxli" crate-type = ["cdylib"] [dependencies] -pyo3 = { version="0.19.0", features = ["extension-module", "anyhow"] } +pyo3 = { version="0.22.2", features = ["extension-module", "anyhow"] } sourmash = "0.15.1" anyhow = "1.0.86" From fbe83e3a59623741a3878029ef56eb5e39703c0b Mon Sep 17 00:00:00 2001 From: "C. Titus Brown" Date: Mon, 2 Sep 2024 12:59:55 -0700 Subject: [PATCH 2/2] fix --- src/lib.rs | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/lib.rs b/src/lib.rs index 61b1444..5cc9322 100644 --- a/src/lib.rs +++ b/src/lib.rs @@ -120,7 +120,7 @@ impl KmerCountTable { } #[pymodule] -fn oxli(_py: Python, m: &PyModule) -> PyResult<()> { +fn oxli(m: &Bound<'_, PyModule>) -> PyResult<()> { m.add_class::()?; Ok(()) }