Knowledge - syncing of pdf files results in duplicate folder names being presented in the file tree structure.

[sangee2004]

Steps to reproduce the problem:

1. Create an agent and add knowledge files from cry.org

2. Once sync is completed, notice there is duplicate entries for www.cry.org and there is cry.org with just downloads folder.

Also notice that this folder cry.org ( and all subfolder under it) never shows "Included" state even after it was included ( and files have been ingested successfully).

Expected Behavior:
All pdf files under download folder should be consolidated in this case to be under one www.cry.org folder.