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@tischfieldlab Jay A. Tischfield Lab

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    16 repositories

    • med-associates-utils

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • moseq-reports

      Public
      Interactive interrogation of Moseq models
      Vue
      •0•0•14•7•Updated Sep 24, 2024Sep 24, 2024

    • SAS-NAS-Connector

      Public
      C#
      •0•0•0•2•Updated Sep 3, 2024Sep 3, 2024

    • Closed_Loop_Opto_Stimulation

      Public
      Closed-loop optogenetic stimulation paradigm that utilizes Bonsai and DeepLabCut-Live pose estimation to manipulate spinal circuits based on the phase of the rodent locomotor cycle
      MATLAB
      •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • moseq2-lda

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • Joint_kinematics

      Public
      Pipeline to calculate hindlimb joint kinematics and forelimb/hindlimb coordination generated by Nofar Ozeri-Engelhard.
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • moseq2-nlp

      Public
      Interrogating Moseq data using a NLP-based approach
      Jupyter Notebook
      •0•1•1•0•Updated Jul 8, 2023Jul 8, 2023

    • dlc2labelstudio

      Public
      A package to automate importing a DeepLabCut (DLC) dataset into Label Studio (LS) and exporting Label Studio annotation results back into DeepLabCut formats.
      Python
      •0•2•0•0•Updated Mar 22, 2023Mar 22, 2023

    • paws-tools

      Public
      A collection of tools for working with PAWS
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•1•Updated Mar 8, 2023Mar 8, 2023

    • SynapseTools

      Public
      Basic tools to interface with Tucker-Davis Technologies Synapse software
      C#
      •
      MIT License
      •2•1•0•0•Updated Dec 8, 2022Dec 8, 2022

    • ImarisXtensions

      Public
      Python
      •0•0•0•0•Updated May 18, 2022May 18, 2022

    • RapID-cell-counter

      Public
      PyQT graphical interface for high throuput cell counting for research
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • pyhsmm

      Public
      Python
      •
      MIT License
      •174•0•0•0•Updated Sep 17, 2020Sep 17, 2020

    • moseq2-tag

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 10, 2020Sep 10, 2020

    • pyhsmm-autoregressive

      Public
      autoregressive plugin
      Python
      •
      Other
      •27•0•0•0•Updated Aug 31, 2020Aug 31, 2020

    • Parsing-RepeatMasker-Outputs

      Public
      Few scripts facilitating the extraction of info from Repeat Masker .out files
      Perl
      •
      MIT License
      •31•0•0•0•Updated Oct 12, 2017Oct 12, 2017