Skip to content

@sib-swiss SIB Swiss Institute of Bioinformatics

Change the repository type filter

All

    Repositories list

    122 repositories

    • sendcrypt

      Public
      Modern and easy to use client to securely send encrypted sensitive data by SFTP. Linux, MacOS, and Windows.
      encryptionsftp-clientopenpgpsibsendcrypt
      TypeScript
      •
      MIT License
      •0•1•2•0•Updated Nov 19, 2024Nov 19, 2024

    • kgsteward

      Public
      Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)
      Python
      •
      GNU General Public License v3.0
      •2•5•0•1•Updated Nov 19, 2024Nov 19, 2024

    • sparql-editor

      Public
      💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.
      sparqlsparql-querysparql-query-buildersparql-editoryasgui
      TypeScript
      •
      MIT License
      •0•3•4•0•Updated Nov 19, 2024Nov 19, 2024

    • glittr

      Public
      A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
      PHP
      •
      MIT License
      •1•35•4•0•Updated Nov 19, 2024Nov 19, 2024

    • introduction-to-git

      Public
      Introduction to Git course
      0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • training-collection

      Public
      Collection of bioinformatics training materials
      Python
      •
      Other
      •182•981•1•0•Updated Nov 17, 2024Nov 17, 2024

    • single-cell-python-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 17, 2024Nov 17, 2024

    • spatial-transcriptomics-training

      Public
      R
      •
      Creative Commons Attribution 4.0 International
      •1•2•1•0•Updated Nov 17, 2024Nov 17, 2024

    • glittr-stats

      Public
      General statistics of Glittr.org. Comes with the manuscript.
      PostScript
      •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • pwmscan

      Public
      A Web-based genome-wide Position Weight Matrix (PWM) Scanner
      C
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

    • queryLibrary

      Public
      Collection of OMOP predefined queries.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • sparql-examples-utils

      Public
      A tool to maintain and test your SPARQL examples
      qualitysparqlrdf
      Java
      •
      Other
      •10•2•14•4•Updated Nov 15, 2024Nov 15, 2024

    • NGS-introduction-training

      Public
      SIB course that introduces analysis of NGS data
      trainingtutorialcourseteachingngs-analysis
      Shell
      •
      Creative Commons Attribution 4.0 International
      •12•15•4•0•Updated Nov 14, 2024Nov 14, 2024

    • sparql-examples-template

      Public template
      Template repository for your sparql-examples project
      HTML
      •
      Other
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • dsQueryLibraryServer

      Public
      R
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • intermediate-python-training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •26•63•4•1•Updated Nov 11, 2024Nov 11, 2024

    • pytorch-practical-training

      Public
      pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
      bioinformaticsdeep-learningpytorchtraining-materials
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •3•14•0•0•Updated Nov 8, 2024Nov 8, 2024

    • sparql-llm

      Public
      🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries
      sparqlsparql-query-builderexpasyllm
      Jupyter Notebook
      •
      MIT License
      •1•7•1•0•Updated Nov 7, 2024Nov 7, 2024

    • epinorm

      Public
      Scripts for processing of disease outbreak records as part of the MOOD project.
      Python
      •0•2•1•0•Updated Nov 6, 2024Nov 6, 2024

    • sparql-training

      Public
      This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
      Jupyter Notebook
      •4•8•0•0•Updated Nov 4, 2024Nov 4, 2024

    • sparql-examples

      Public
      A set of SPARQL examples that are used in different SIB resources
      HTML
      •
      Other
      •10•9•5•2•Updated Nov 1, 2024Nov 1, 2024

    • single-cell-training

      Public
      SIB course on single cell transcriptomics by mostly using the Seurat pipeline
      bioinformaticstutorialrna-seqcourseteachingsingle-cell
      R
      •
      Creative Commons Attribution 4.0 International
      •37•78•2•0•Updated Nov 1, 2024Nov 1, 2024

    • opal-docker-sib

      Public
      Shell
      •0•1•0•0•Updated Nov 1, 2024Nov 1, 2024

    • pyrheadb

      Public
      Repository for the Python package intended to facilitate access to Rhea data from Python
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • containers-snakemake-training

      Public
      Course website "Introduction to Containers and Snakemake for Reproducible Research"
      Dockerfile
      •
      Creative Commons Attribution 4.0 International
      •14•5•0•0•Updated Oct 28, 2024Oct 28, 2024

    • immunology-in-bioinformatics-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •3•1•0•0•Updated Oct 24, 2024Oct 24, 2024

    • containers-introduction-training

      Public
      Course website "Docker and Singularity for reproducible research: getting started with containers"
      trainingdockerdockerfiletutorialcontainerssingularityteaching
      HTML
      •
      Creative Commons Attribution 4.0 International
      •14•28•1•0•Updated Oct 21, 2024Oct 21, 2024

    • intermediate-machine-learning-training

      Public
      Intermediate Machine Learning course of the Swiss Institute of Bioinformatics
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•3•0•Updated Oct 14, 2024Oct 14, 2024

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •916•0•0•0•Updated Oct 6, 2024Oct 6, 2024

    • images-training

      Public
      0•0•0•0•Updated Oct 4, 2024Oct 4, 2024