Repositories list

• ProDy

  Public
  A Python Package for Protein Dynamics Analysis

  dynamicsproteinpython

  Python

  •

  Other

  •158•439•68•27•Updated Dec 17, 2024Dec 17, 2024

• ProDy-website

  Public
  ProDy Website

  Jupyter Notebook

  •

  MIT License

  •15•2•1•0•Updated Dec 7, 2024Dec 7, 2024

• NMWiz

  Public
  Normal Mode Wizard

  Tcl

  •4•7•1•1•Updated Oct 8, 2023Oct 8, 2023

• rhapsody-website

  Public
  PHP

  •1•0•0•0•Updated Apr 21, 2023Apr 21, 2023

• rhapsody

  Public
  Python program, based on Prody, for pathogenicity prediction of human missense variants

  Python

  •

  GNU General Public License v3.0

  •11•8•2•0•Updated Jun 29, 2021Jun 29, 2021

• DruGUI

  Public
  Druggability Suite

  Tcl

  •

  Other

  •8•6•5•1•Updated Jun 28, 2021Jun 28, 2021

• prody-feedstock

  Public
  A conda-smithy repository for prody.

  BSD 3-Clause "New" or "Revised" License

  •5•0•0•0•Updated Sep 15, 2020Sep 15, 2020

• coMD

  Public
  This package runs collective molecular dynamics simulations, where collective motions from anisotropic network model normal mode analysis drive all-atom dynamics through targeted molecular dynamics simulations and energy minimization

  simulationspathway-analysissampling-methods+ 2anmcomd

  Rich Text Format

  •

  MIT License

  •6•1•7•1•Updated Aug 10, 2020Aug 10, 2020

• NMWiz-chimera

  Public
  Python

  •2•2•3•0•Updated Jun 18, 2020Jun 18, 2020

• rhapsody-tutorials

  Public
  collection of Jupyter Notebooks with tutorials for Rhapsody

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Mar 7, 2020Mar 7, 2020

• Pharmmaker

  Public
  Making pharmacophore models from druggability simulations

  Tcl

  •2•2•5•0•Updated Sep 17, 2019Sep 17, 2019

• coMD_docs

  Public
  Python

  •1•2•0•0•Updated Oct 23, 2013Oct 23, 2013