Repositories list

• py-graph-imputation

  Public
  Graph Imputation

  Python

  •

  GNU Lesser General Public License v3.0

  •8•2•5•0•Updated Jan 2, 2025Jan 2, 2025

• ambiguous-genotypes

  Public
  sample data with ambiguous genotypes and the corresponding unambiguous genotype

  Apache License 2.0

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• dash

  Public
  Data Standards Hackathon for NGS based typing.

  HTML

  •

  GNU Lesser General Public License v3.0

  •13•13•15•0•Updated Nov 25, 2024Nov 25, 2024

• py-ard

  Public
  HLA ARD Reduction in Python

  hla

  Python

  •

  GNU Lesser General Public License v3.0

  •13•18•13•0•Updated Oct 30, 2024Oct 30, 2024

• phycus

  Public
  Service used for curation of Haplotype Frequency

  Java

  •

  GNU Lesser General Public License v3.0

  •23•7•18•1•Updated Oct 11, 2024Oct 11, 2024

• asom

  Public
  ASOM: Age/Sex Optimal Matching

  R

  •1•0•0•2•Updated Oct 2, 2024Oct 2, 2024

• wmda_mv4

  Public
  WMDA matching validation code

  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• homebrew-tap

  Public
  Tap to install nmdp-bioinformatics software for Homebrew

  Ruby

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• hapi-fhir

  Public
  HAPI FHIR - Java API for HL7 FHIR Clients and Servers

  Java

  •

  Apache License 2.0

  •1.3k•2•0•7•Updated Sep 11, 2024Sep 11, 2024

• tarr2fhir

  Public archive
  Convert tarr2fhir Sync4Genes - Versiti and GenDx

  Java

  •

  Apache License 2.0

  •1•1•0•9•Updated Jul 23, 2024Jul 23, 2024

• imgt2aa

  Public
  extract aligned amino acid sequences from IMGT/HLA

  Perl

  •

  GNU Lesser General Public License v3.0

  •3•4•1•0•Updated Jun 27, 2024Jun 27, 2024

• gfe-db

  Public
  Graph database representing IPD-IMGT/HLA sequence data as GFE

  gfe

  Makefile

  •

  GNU General Public License v3.0

  •15•10•18•2•Updated Jun 23, 2024Jun 23, 2024

• nmdp-bioinformatics.github.io

  Public
  Organization Website for NMDP Bioinformatics

  HTML

  •2•1•0•0•Updated May 1, 2024May 1, 2024

• imgt_biosqldb

  Public
  The IMGT/HLA sequence data persisted in a BioSQL database

  mysqlpythondocker+ 4bioinformaticshlahla-databasebiosql

  Python

  •

  GNU General Public License v3.0

  •3•3•0•0•Updated Mar 11, 2024Mar 11, 2024

• gfe-docker-compose-app

  Public
  GFE service and GFE Database Docker Compose

  0•2•0•0•Updated Mar 11, 2024Mar 11, 2024

• dpb1-prediction

  Public
  DPB1 and TCE Prediction

  Python

  •3•0•3•1•Updated Feb 16, 2024Feb 16, 2024

• nmdp-python-project-template

  Public template
  Python project template for NMDP Bioinformatics

  Python

  •

  GNU Lesser General Public License v3.0

  •2•1•0•0•Updated Feb 12, 2024Feb 12, 2024

• py-graph-match

  Public
  Graph Match

  Python

  •

  GNU Lesser General Public License v3.0

  •3•0•1•0•Updated Jan 29, 2024Jan 29, 2024

• py-graph-em

  Public
  Python graph based Expectation Maximization

  Python

  •

  GNU Lesser General Public License v3.0

  •3•0•0•0•Updated Jan 29, 2024Jan 29, 2024

• ngs

  Public
  Next generation sequencing (NGS/HTS) tools.

  Java

  •

  GNU Lesser General Public License v3.0

  •17•18•5•3•Updated Jan 25, 2024Jan 25, 2024

• dpb1-expression

  Public
  DPB1 expression Tool

  hla

  Python

  •1•0•1•0•Updated Jan 22, 2024Jan 22, 2024

• gfe-service

  Public
  GFE Webservice: Provides REST endpoints to GFE related functions

  gfe

  Python

  •

  GNU Lesser General Public License v3.0

  •7•3•8•3•Updated Jan 3, 2024Jan 3, 2024

• pyard-legacy

  Public
  Legacy pyard repo. Not used anymore

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Jan 2, 2024Jan 2, 2024

• py-gfe

  Public
  Python package for creating GFE notation from annotated sequences

  gfe

  Python

  •

  GNU General Public License v3.0

  •9•2•6•1•Updated Dec 11, 2023Dec 11, 2023

• hml-validation-portal

  Public
  Portal for HML validation

  HTML

  •

  GNU Lesser General Public License v3.0

  •3•1•5•7•Updated Jul 18, 2023Jul 18, 2023

• service-feature

  Public
  Enumerated sequence feature service.

  Java

  •

  GNU Lesser General Public License v3.0

  •10•2•7•1•Updated Jun 22, 2023Jun 22, 2023

• ImmunogeneticDataTools

  Public
  Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium

  Java

  •7•11•9•1•Updated Jun 14, 2023Jun 14, 2023

• grimm

  Public
  GRIMM: Graph IMputation and Matching for HLA Genotypes

  Python

  •

  GNU Lesser General Public License v3.0

  •6•9•0•0•Updated May 24, 2023May 24, 2023

• seq-ann

  Public
  Python package for doing fast and accurate sequence annotation

  bioinformaticsngshla+ 3sequence-analysishla-typinggfe

  Python

  •

  GNU General Public License v3.0

  •8•5•5•2•Updated May 22, 2023May 22, 2023

• kafka-producer

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023