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@graph-genome Graph Genome Browser Consortium

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    14 repositories

    • Schematize

      Public
      Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.
      JavaScript
      •
      Apache License 2.0
      •8•10•28•1•Updated Apr 23, 2024Apr 23, 2024

    • graph-genome.github.io

      Public
      Graph Genome Documentation
      HTML
      •5•6•10•0•Updated Jun 22, 2022Jun 22, 2022

    • component_segmentation

      Public
      Read in ODGI Bin output and identify co-linear components
      Python
      •
      Apache License 2.0
      •4•3•12•1•Updated Feb 17, 2021Feb 17, 2021

    • pipeline

      Public
      odgi - component_segmentation - Schematize
      Shell
      •2•4•2•0•Updated Feb 11, 2021Feb 11, 2021

    • jbrowsing_graphs

      Public
      JBrowse1 utiltized on Graph Genomes
      Apache License 2.0
      •0•0•0•0•Updated Apr 6, 2020Apr 6, 2020

    • jbrowse-components

      Public
      Reusable graphical components for genomic data
      JavaScript
      •63•2•0•0•Updated Feb 25, 2020Feb 25, 2020

    • graph-genomics-review

      Public archive
      review article on graph genomics
      TeX
      •24•2•0•0•Updated Dec 5, 2019Dec 5, 2019

    • graph_summarization

      Public archive
      Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.
      Jupyter Notebook
      •
      Other
      •1•7•8•2•Updated Dec 5, 2019Dec 5, 2019

    • spodgi

      Public
      RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
      Python
      •
      MIT License
      •4•0•0•0•Updated Nov 22, 2019Nov 22, 2019

    • MoMI-G

      Public archive
      Schematize is a Genome Browser for Graph Genomes. It is designed to scale to thousands of individuals and gigabase of sequence. Schematize is a fork of MoMI-G by Toshiyuki Yokoyama.
      TypeScript
      •
      MIT License
      •6•0•0•0•Updated Nov 16, 2019Nov 16, 2019

    • MatrixTubeMap

      Public archive
      Using a Matrix to show coverage of multiple genomic sequences using a prototype hack of Sequence Tubemap
      JavaScript
      •
      MIT License
      •27•7•7•0•Updated Nov 5, 2019Nov 5, 2019

    • tubeify

      Public archive
      This repository serves as a temporary storage for the backend part developed at the BioHackathon 2019.
      TypeScript
      •0•0•0•2•Updated Nov 2, 2019Nov 2, 2019

    • SPARQL_PLAYGROUND

      Public
      This repository should host preconstructed SPARQL endpoints serving graphs of the variation graph toolkit via virtuoso backend.
      Apache License 2.0
      •0•0•1•0•Updated Sep 25, 2019Sep 25, 2019

    • bh19_frontend

      Public archive
      This repository serves as a temporary storage for the frontend part developed at the BioHackathon 2019. The starting point is taken from https://github.com/subwaystation/sequenceTubeMap/tree/split.
      JavaScript
      •
      MIT License
      •0•1•2•0•Updated Sep 5, 2019Sep 5, 2019