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    25 repositories

    • lamp-ld

      Public
      C++
      •0•1•0•0•Updated Apr 16, 2024Apr 16, 2024

    • h2gene

      Public
      Jupyter Notebook
      •
      Other
      •1•2•5•0•Updated Feb 10, 2024Feb 10, 2024

    • tinygwas

      Public
      C++
      •1•2•0•0•Updated Jan 28, 2024Jan 28, 2024

    • transpher

      Public
      MIT License
      •0•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • focus

      Public
      FOCUS: Fine-mapping Of CaUsal gene Sets
      Python
      •
      GNU General Public License v3.0
      •17•44•14•0•Updated Aug 30, 2023Aug 30, 2023

    • admixed_genotype_simulation

      Public
      A Snakemake pipeline for simulating genotypes for admixed population
      Python
      •0•2•0•0•Updated Oct 6, 2022Oct 6, 2022

    • UKB-PHENO-SIM

      Public
      Jupyter Notebook
      •0•0•1•0•Updated Mar 5, 2022Mar 5, 2022

    • tractor-response

      Public
      Response to "Tractor uses local ancestry to enable the inclusion of admixed individuals in GWAS and to boost power"
      Jupyter Notebook
      •0•3•0•0•Updated Feb 2, 2022Feb 2, 2022

    • hichip

      Public
      R
      •1•4•0•0•Updated Nov 17, 2021Nov 17, 2021

    • prs-uncertainty

      Public
      R
      •3•3•1•0•Updated Sep 24, 2021Sep 24, 2021

    • fizi

      Public
      Leveraging functional information to improve GWAS summary statistic imputation
      Python
      •
      GNU General Public License v3.0
      •4•20•4•0•Updated Aug 10, 2021Aug 10, 2021

    • basic_genoeypte_qc_pipeline

      Public
      Version of basic genotype QC pipeline from ATLAS, but modified for Hoffman
      Jupyter Notebook
      •0•0•0•0•Updated Oct 7, 2020Oct 7, 2020

    • BEAVR

      Public
      Python
      •0•1•0•0•Updated Oct 4, 2020Oct 4, 2020

    • scripts_collection

      Public
      A collection of scripts.
      0•0•0•0•Updated Jan 21, 2020Jan 21, 2020

    • h2-GRE

      Public
      Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 2019)
      Python
      •4•14•1•0•Updated Sep 5, 2019Sep 5, 2019

    • focus_paper

      Public
      TWAS and fine-mapping results from "Probabilistic fine-mapping of transcriptome-wide association studies"
      0•1•0•0•Updated Jan 8, 2019Jan 8, 2019

    • prca_twas

      Public
      Repository for prostate cancer TWAS in OncoArray meta-analysis
      GNU General Public License v3.0
      •2•4•0•0•Updated Oct 9, 2018Oct 9, 2018

    • sumstats

      Public
      scripts for checking curated summary stats
      Python
      •0•1•0•0•Updated Aug 3, 2018Aug 3, 2018

    • UNITY

      Public
      Python
      •0•3•0•0•Updated Jul 16, 2018Jul 16, 2018

    • gene_sets

      Public
      Mendelian disorder gene sets for specific traits, created from mining OMIM for phentoype-specific clinical keywords
      1•2•0•0•Updated May 31, 2018May 31, 2018

    • HiC

      Public
      0•0•0•0•Updated May 22, 2018May 22, 2018

    • response

      Public
      Roff
      •0•0•0•0•Updated May 11, 2018May 11, 2018

    • RHOGE

      Public
      Estimate genetic correlation using predicted expression
      gwasrstatsstatistical-geneticsstatgen
      R
      •
      MIT License
      •3•21•1•0•Updated Mar 8, 2018Mar 8, 2018

    • big_summer_2017

      Public
      a repository for storing scripts for the big summer
      R
      •1•1•0•0•Updated Jul 17, 2017Jul 17, 2017

    • TWAS30

      Public
      TWAS association statistics from Mancuso et al AJHG 2017
      0•4•0•0•Updated Mar 16, 2017Mar 16, 2017