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@biospi Health Data Science for Omics, Sensing and Antimicrobial Resistance

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    31 repositories

    • DogHeart

      Public
      Python
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • pwiz

      Public
      The ProteoWizard fork implements the new mzMLb hybrid file format
      C#
      •
      Apache License 2.0
      •100•3•1•1•Updated Dec 2, 2024Dec 2, 2024

    • WodCat

      Public
      Python
      •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • Recombination

      Public
      Python
      •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • seaMass-alpha

      Public
      seaMass sparse signal decomposition and restoration of raw LC-MS data
      C++
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Aug 14, 2024Aug 14, 2024

    • WhyndhurstCCTVSimulation

      Public
      Python
      •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • PredictionOfDHealthInSR

      Public
      Python
      •0•0•0•0•Updated May 27, 2024May 27, 2024

    • PredictionOfHelminthsInfection

      Public
      Python
      •0•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • LabelaHerdinMinutes

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • seaMass-windeps

      Public
      3rd party dependencies for seamass and seamass-viz Windows builds
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

    • PiLogger

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2023Oct 18, 2023

    • WeatherPi

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • seaMass

      Public
      Differential expression analysis for mass spectrometry proteomics and metabolomics
      R
      •
      Apache License 2.0
      •3•8•1•0•Updated Aug 16, 2023Aug 16, 2023

    • LABMARCS

      Public
      LABMARCS COVID-19
      R
      •0•2•1•0•Updated Jun 22, 2023Jun 22, 2023

    • projpred

      Public
      Projection predictive variable selection
      R
      •
      Other
      •25•0•0•0•Updated May 10, 2022May 10, 2022

    • UKVetMedicinesDataStandards

      Public
      Building open data standards for UK veterinary medicines data exchange based up ICAR Animal Data Exchange standards
      MIT License
      •0•1•1•0•Updated May 14, 2021May 14, 2021

    • containers

      Public
      biospi custom docker containers
      Dockerfile
      •
      Apache License 2.0
      •0•2•0•0•Updated Mar 17, 2021Mar 17, 2021

    • ggdist

      Public
      Visualizations of distributions and uncertainty
      R
      •
      GNU General Public License v3.0
      •26•0•0•0•Updated Sep 27, 2020Sep 27, 2020

    • seaMassValidation

      Public
      Spike-in dataset validation scripts for seaMass
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 14, 2020Sep 14, 2020

    • MetricLearningIdentification

      Public
      Underpinning code for our paper - "Visual Identification of Individual Holstein Friesian Cattle via Deep Metric Learning"
      Python
      •16•0•0•0•Updated Jul 15, 2020Jul 15, 2020

    • ArchiveMounter

      Public
      Mounts archives like disk images (macOS)
      Swift
      •8•0•0•0•Updated Jan 3, 2020Jan 3, 2020

    • bayesprot

      Public
      DEPRECATED - Bayesian linear mixed-effects model for protein-level quantification in proteomics
      R
      •
      Apache License 2.0
      •3•6•0•0•Updated Oct 31, 2019Oct 31, 2019

    • ashr

      Public
      An R package for adaptive shrinkage
      R
      •
      GNU General Public License v3.0
      •36•1•0•0•Updated May 14, 2019May 14, 2019

    • msgfplus

      Public
      Java
      •
      Other
      •36•0•0•0•Updated Oct 30, 2017Oct 30, 2017

    • mzR

      Public
      This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
      C++
      •28•0•0•0•Updated Sep 8, 2017Sep 8, 2017

    • SeaMass.jl

      Public
      Read mzMLb and seaMass Input/Output files
      Julia
      •
      Other
      •0•1•0•0•Updated Jul 28, 2017Jul 28, 2017

    • SeaMassTD.jl

      Public
      Julia IO libraries and testing for seaMass-TD
      Julia
      •
      Apache License 2.0
      •0•1•0•0•Updated May 26, 2017May 26, 2017

    • seamass-viz

      Public
      Streaming visualisation of SMV files created by seaMass
      C++
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 4, 2016Sep 4, 2016

    • ClusterManagers.jl

      Public
      Julia
      •
      Other
      •74•1•0•0•Updated May 10, 2016May 10, 2016

    • GIRO

      Public
      Groupwise Image Registration and nOrmalisation
      MATLAB
      •0•0•0•0•Updated May 3, 2016May 3, 2016