Repositories list

• 2024_WCM_CTSC_seminar_GenAI

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• 2025_CTIV_5057_LLMs_in_CTS

  Public
  HTML

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• 2025_HINF_5016_NLP_in_Health

  Public
  HTML

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• 2025_SYSEN_5630_ClinicalNLP_and_LLMs

  Public
  HTML

  •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• RadReportX

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 30, 2024Nov 30, 2024

• medtext

  Public
  Python

  •

  MIT License

  •0•2•1•0•Updated Nov 28, 2024Nov 28, 2024

• 2023_ICCV_CVAMD

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• 2024_MICCAI_CXRLT

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• 2024_AMIA_LLM_Tutorial

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• 2024_AMIA_LLM_Panel

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Nov 1, 2024Nov 1, 2024

• 2024_AMIA_Multimodal

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• DermpathNet

  Public
  MIT License

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• CTSA_GenAI_Survey

  Public
  MIT License

  •0•0•0•0•Updated Sep 28, 2024Sep 28, 2024

• llm4proofreading

  Public
  Reportedly LLMs: Generative Large Language Models for Proofreading Errors in Radiology Reports

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

• longitudinal_transformer_for_survival_analysis

  Public
  [npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling" by Gregory Holste, Mingquan Lin, Ruiwen Zhou, Fei Wang, Lei Liu, Qi Yan, Sarah H Van Tassel, Kyle Kovacs, Emily Y Chew, Zhiyong Lu, Zhangyang Wang, & Yifan Peng

  deep-learningmedical-imagingsurvival-analysis+ 4longitudinal-dataglaucomamacular-degenerationfundus-image

  Python

  •

  MIT License

  •1•9•0•0•Updated Aug 29, 2024Aug 29, 2024

• 2024_commsmed_inconsistency_detection

  Public
  A Natural Language Processing Approach to Detect Inconsistencies in Death Investigation Notes Attributing Suicide Circumstances

  nlpsuicidenvdrs

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 27, 2024Jul 27, 2024

• redose

  Public
  MIT License

  •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• report_generation_amia2022

  Public
  Python

  •

  MIT License

  •2•8•3•0•Updated Jun 20, 2024Jun 20, 2024

• AMD_prognosis_mlmi2022

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated May 23, 2024May 23, 2024

• suicide_sdoh

  Public
  Suicide-specific SDoH

  Python

  •

  MIT License

  •1•1•0•0•Updated May 23, 2024May 23, 2024

• PMC-CXR

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 23, 2024May 23, 2024

• MMSNet_mlmi2022

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated May 23, 2024May 23, 2024

• Fairness

  Public
  Python

  •

  MIT License

  •0•3•0•0•Updated May 23, 2024May 23, 2024

• negbio2

  Public
  High-performance tool for negation and uncertainty detection in radiology reports

  negationnegation-patternsnegbio+ 1radiology-report

  Python

  •

  Other

  •1•16•2•2•Updated May 3, 2024May 3, 2024

• 2023_AMIA_LLM

  Public
  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• CXRFairness

  Public
  Python

  •0•1•0•0•Updated Nov 26, 2023Nov 26, 2023

• bioc

  Public
  Data structures and code to read/write BioC XML and Json.

  jsonxmlwriter+ 3readerbiocbionlp

  Python

  •

  MIT License

  •11•31•1•0•Updated Aug 21, 2023Aug 21, 2023

• radtext

  Public
  Python Radiology Text Analysis System

  nlptext-miningradiology-report

  Python

  •

  MIT License

  •8•13•2•1•Updated Jul 31, 2023Jul 31, 2023

• 2023_ichi_llm

  Public archive
  Workshop on Large Language Models

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

• GlaucomaNet

  Public
  A deep-learning algorithm for the diagnosis of primary open-angle glaucoma from fundus photographs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Mar 29, 2023Mar 29, 2023