Skip to content

@amath-idm AMath-IDM

Change the repository type filter

All

    Repositories list

    26 repositories

    • MIGHTI

      Public
      Python
      •1•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • covid_es

      Public
      Code for paper "Cost-effectiveness of wastewater-based environmental surveillance for SARS-CoV-2 in Blantyre, Malawi and Kathmandu, Nepal: a model-based study"
      simulationwastewatercovid-19covasimenvironmental-surveillance
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • hpvsim_pxv_younger

      Public
      Python
      •0•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • hpvsim_multical

      Public
      Python
      •0•0•0•0•Updated Mar 3, 2024Mar 3, 2024

    • idm_amath_cova

      Public
      COVID-19 Agent-based Simulator (Covasim): a model for understanding novel coronavirus epidemiology
      Python
      •
      Other
      •223•0•0•2•Updated Jan 3, 2024Jan 3, 2024

    • parestlib

      Public
      Parameter estimation library
      Python
      •
      Other
      •0•0•11•1•Updated Jan 3, 2024Jan 3, 2024

    • covasim_methods_paper

      Public
      Scripts for generating figures for the Covasim methods paper (PLOS Computational Biology)
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • simc2023

      Public
      Tutorials for the SIMC 2023 workshop
      Jupyter Notebook
      •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • makerere_training

      Public
      Materials for the Starsim training workshops at Makerere School of Public Health, July 2023
      Python
      •2•1•0•0•Updated Jul 6, 2023Jul 6, 2023

    • hpvsim_ghlab_analyses

      Public
      Python
      •1•1•0•0•Updated Mar 29, 2023Mar 29, 2023

    • post-omicron

      Public
      Python
      •
      Other
      •0•0•3•1•Updated Mar 24, 2023Mar 24, 2023

    • mla-abc-manuscript

      Public
      Code to generate figures for the machine learning approximate Bayesian computation manuscript
      Python
      •0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • hpvsim_england

      Public
      Python
      •0•1•0•0•Updated Mar 10, 2023Mar 10, 2023

    • hpvsim_ghlabs_training

      Public
      Python
      •0•1•0•0•Updated Feb 21, 2023Feb 21, 2023

    • scipy2022_pythonvpandemic

      Public
      Talk for SciPy 2022, "Python vs the pandemic"
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 21, 2022Oct 21, 2022

    • brazil_gamma_replacement

      Public
      Repository to support the publication "Impact of SARS-CoV-2 Gamma lineage introduction and COVID-19 vaccination on the epidemiological landscape of a Brazilian city"
      brazilgammacovasimcovid-19
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

    • scipy_proceedings

      Public
      Tools used to generate the SciPy conference proceedings
      Python
      •
      Other
      •529•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • controlling-covid19-ttq

      Public
      Repository to support the publication "Controlling COVID-19 via test-trace-quarantine"
      epidemiologycovasimtest-trace-quarantinecovid-19
      Python
      •
      Other
      •2•3•0•0•Updated Jan 12, 2022Jan 12, 2022

    • infectious_disease_predictability

      Public
      Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
      TeX
      •
      Other
      •8•0•0•0•Updated Oct 21, 2021Oct 21, 2021

    • parallelizing-python

      Public
      Tutorial on different recipes for parallelizing Python
      Python
      •
      MIT License
      •0•0•0•0•Updated May 12, 2021May 12, 2021

    • covasim_uk

      Public
      Mathematical modelling of different strategies to reopen schools in the UK post COVID-19
      Python
      •9•1•0•0•Updated Feb 18, 2021Feb 18, 2021

    • ptti

      Public
      Population-wide Testing, Tracing and Isolation Models
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•1•0•0•Updated Nov 9, 2020Nov 9, 2020

    • cvsim_multicountry

      Public
      COVID-19 modelling
      Python
      •2•1•0•0•Updated Sep 16, 2020Sep 16, 2020

    • ushiriki-policy-engine-library

      Public
      User facing library for accessing the Ushiriki Policy Engine webservice API
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Aug 23, 2020Aug 23, 2020

    • fastai2

      Public
      Temporary home for fastai v2 while it's being developed
      Jupyter Notebook
      •
      Apache License 2.0
      •235•0•0•0•Updated Aug 7, 2020Aug 7, 2020

    • covasim_apps

      Public
      Applications of Covasim
      Python
      •
      Other
      •1•4•1•0•Updated Jul 14, 2020Jul 14, 2020