Repositories list

• MedBook-Documentation

  Public
  Documents explaining MedBook

  0•0•0•0•Updated Dec 12, 2017Dec 12, 2017

• MedBook_

  Public
  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•9•6•Updated May 22, 2017May 22, 2017

• data-wrangling-scripts

  Public
  Scripts used manually to prepare data for import to and export from MedBook

  Python

  •0•2•0•0•Updated Apr 20, 2017Apr 20, 2017

• treeshop

  Public
  Distributed task tools to run small batches outside the core

  Makefile

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 10, 2017Mar 10, 2017

• case-book

  Public
  Tumor Board Insight app

  JavaScript

  •1•0•0•0•Updated Jan 5, 2017Jan 5, 2017

• medbook-xena-importer

  Public
  A grab bag of scripts for bringing MedBook data into Xena

  Shell

  •0•0•0•0•Updated Dec 8, 2016Dec 8, 2016

• dockerspawner

  Public
  Spawns JupyterHub user servers in Docker containers

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •308•0•0•0•Updated Oct 26, 2016Oct 26, 2016

• MedBook

  Public
  Parent repo, all MedBook components included as submodules

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2•1•2•0•Updated Oct 13, 2016Oct 13, 2016

• patient-care

  Public
  Clincian facing portal showing pathways, signatures, and genes of interest

  JavaScript

  •1•2•34•0•Updated Oct 13, 2016Oct 13, 2016

• meteor-docker-image

  Public
  Shell

  •0•0•0•0•Updated Oct 11, 2016Oct 11, 2016

• MedBook-JobRunner

  Public
  Runs and monitors Jobs (Current UNIX processes, Galaxy and other Environments coming)

  JavaScript

  •1•2•5•1•Updated Oct 10, 2016Oct 10, 2016

• external-tools

  Public
  allows external tools to run on MedBook data.

  Python

  •1•0•1•1•Updated Oct 10, 2016Oct 10, 2016

• MedBook-Wrangler

  Public
  JavaScript

  •1•1•11•0•Updated Oct 5, 2016Oct 5, 2016

• medbook-dgidb

  Public
  Scripts to extract gene to drug interactions from DGIdb into a gmt file

  Makefile

  •0•0•0•0•Updated Oct 4, 2016Oct 4, 2016

• primary-collections

  Public
  The repository for medbook:primary-collections

  JavaScript

  •1•0•0•1•Updated Sep 12, 2016Sep 12, 2016

• collaborations

  Public
  Collaboration based security architecture (similar to Roles and Friends)

  JavaScript

  •4•0•2•0•Updated Sep 12, 2016Sep 12, 2016

• blobs

  Public
  JavaScript

  •0•0•3•0•Updated Sep 12, 2016Sep 12, 2016

• wrangler-collections

  Public
  JavaScript

  •1•0•0•0•Updated Aug 17, 2016Aug 17, 2016

• cbioportal-docker

  Public
  cBioPortal | Dockerized Automated Build Implementation

  JavaScript

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Aug 16, 2016Aug 16, 2016

• fusion

  Public
  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jul 30, 2016Jul 30, 2016

• RPad

  Public
  JavaScript

  •0•0•0•0•Updated Jul 29, 2016Jul 29, 2016

• MedBook-Gateway

  Public
  JavaScript

  •1•0•0•0•Updated Jul 27, 2016Jul 27, 2016

• referential-integrity

  Public
  All code that maintains referential integrity between collections

  JavaScript

  •0•0•0•0•Updated Jul 18, 2016Jul 18, 2016

• MedBook-Fusion5

  Public
  JavaScript

  •0•0•1•0•Updated Jul 8, 2016Jul 8, 2016

• cbioportal

  Public
  JavaScript

  •

  GNU Affero General Public License v3.0

  •530•0•0•0•Updated Jun 22, 2016Jun 22, 2016

• data-sets-forms-proof

  Public
  JavaScript

  •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

• MedBook-CRFs

  Public
  JavaScript

  •1•1•7•5•Updated Jun 20, 2016Jun 20, 2016

• MedBook-Telescope3

  Public
  JavaScript

  •0•0•20•0•Updated Jun 15, 2016Jun 15, 2016

• MedBook-ObservationDeck

  Public
  JavaScript

  •0•0•0•0•Updated Jun 9, 2016Jun 9, 2016

• MedBook-Packages

  Public
  MedBook Packages that are shared between MedBook Apps

  JavaScript

  •0•1•0•0•Updated Jun 9, 2016Jun 9, 2016