Very important software Update

[ihattan2020]

Dear NeuroDesk Team,

I would like to have the below software with up-to-date version. Could you please help to get these modules updated?

below is the link for latest versions for Spinalcordtoolbox (v. 6.4)and ANTs (v. 2.5.3)

-https://github.com/spinalcordtoolbox/spinalcordtoolbox/releases

-https://github.com/ANTsX/ANTs/releases

Many thanks in advance for your help.

Kind Regards,

Ibrahim

[stebo85]

Dear @ihattan2020,

yes - that's possible. Can you propose these changes directly through a pull request?

https://github.com/NeuroDesk/neurocontainers/blob/master/recipes/spinalcordtoolbox/build.sh

https://github.com/NeuroDesk/neurocontainers/blob/master/recipes/ants/build.sh

[ihattan2020]

Dear Steffen,

Thank you for your help. I tried to create a pull request, but this note showed up, "Pull request creation failed. Validation failed: must be a collaborator". I merged the request below this request
NeuroDesk/neurocommand@b664c37

Many thanks in advance for your help.

Kind Regards,

Ibrahim

[stebo85]

You need to modify these two files:

https://github.com/NeuroDesk/neurocontainers/blob/master/recipes/spinalcordtoolbox/build.sh

https://github.com/NeuroDesk/neurocontainers/blob/master/recipes/ants/build.sh

[ihattan2020]

I deleted both links and still showing same error

[stebo85]

you need to change the toolVersion inside these files, not delete them:

[ihattan2020]

Could you please send it as text?

[ihattan2020]

It's a bit of a long process and complicating. Why does not neurodesk keep software up to date ?

Especially I'm using CAI wks. In the past, it was much easier to solve a such issue by IT team in few hours but now it took over a week after we switched to neurodesk platform?

[stebo85]

it would only take a minute if you would update these files - it's just changing the version number and sending a pull request. I have done it now for you. Please send an email to the CAI IT helpdesk to ask for an update of neurodesk on the workstations to pull in these changes.

[ihattan2020]

Could you please send me the guide link for pull request steps or an example request to follow?

[stebo85]

For next time: Click on this little pen on GitHub:

Then change the version number and send a pull request. Done.

[ihattan2020]

Their old response, FYI.So, I'll pass it to them now and hope they will fix this issue.
"Hi Ibrahim,

Our Linux workstations use a mirror copy of Neurodesk.

We can't update them the latest version. You will need to ask Neurodesk to update their versions.

https://www.neurodesk.org/docs/overview/applications/

Cheers,"

Thanks once again, Steff.

[stebo85]

ok, I will reach out to them directly.

[stebo85]

@ihattan2020 - the updates are now installed on the CAI workstations.

[ihattan2020]

Thank you very much for your continuing support and help for this amazing Platform.