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    30 repositories

    • SIMVI

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•0•Updated Oct 28, 2024Oct 28, 2024

    • DysonEqualizer

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • LocalizedMarkerDetector

      Public
      R
      •
      Other
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • GeneTrajectory-python

      Public
      Python implementation of Gene Trajectory
      Jupyter Notebook
      •
      MIT License
      •2•20•2•0•Updated Sep 4, 2024Sep 4, 2024

    • GeneTrajectory

      Public
      R implementation of GeneTrajectory
      R
      •10•50•12•0•Updated Apr 5, 2024Apr 5, 2024

    • GeneTrajectory-paper

      Public
      0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • ALRA

      Public
      Imputation method for scRNA-seq based on low-rank approximation
      dropoutimputationscrna-seqsvdmatrix-completion
      R
      •
      MIT License
      •19•73•19•1•Updated Dec 14, 2023Dec 14, 2023

    • SpectralNet

      Public
      Deep network that performs spectral clustering
      Python
      •
      MIT License
      •103•322•14•0•Updated Feb 23, 2023Feb 23, 2023

    • GTF

      Public
      0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • GT

      Public
      R
      •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

    • stg

      Public
      Python
      •
      MIT License
      •23•1•0•0•Updated Feb 18, 2022Feb 18, 2022

    • ALRA-paper

      Public
      R
      •6•8•1•0•Updated Oct 31, 2021Oct 31, 2021

    • FIt-SNE

      Public
      Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
      visualizationbig-datat-snefast-algorithm
      C++
      •
      Other
      •107•594•18•2•Updated Sep 13, 2021Sep 13, 2021

    • pyFIt-SNE

      Public
      Python Wrapper for FIt-SNE
      C++
      •
      Other
      •11•45•1•1•Updated May 11, 2021May 11, 2021

    • DAseq

      Public
      R
      •
      MIT License
      •5•39•10•0•Updated Apr 5, 2021Apr 5, 2021

    • DAseq-paper

      Public
      R
      •1•3•0•0•Updated Mar 12, 2021Mar 12, 2021

    • Scripts_Roulis_et_al_2020

      Public
      R
      •1•1•1•0•Updated May 26, 2020May 26, 2020

    • batchEffectRemoval2020

      Public
      Python
      •0•1•0•0•Updated Apr 16, 2020Apr 16, 2020

    • RotationScheduler

      Public
      R
      •1•0•0•0•Updated Apr 13, 2020Apr 13, 2020

    • Pembro-Brain-Met-Trial-Nanostring

      Public
      0•0•0•0•Updated Aug 14, 2019Aug 14, 2019

    • rpca-mkl

      Public
      Implementation of randomized PCA using Intel MKL
      pcarandomized-algorithmintel-mkl-library
      C++
      •0•2•3•0•Updated Jul 31, 2019Jul 31, 2019

    • FIt-SNE-paper

      Public
      R
      •0•4•0•0•Updated Feb 11, 2019Feb 11, 2019

    • t-SNE-Heatmaps

      Public
      Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
      R
      •11•48•0•0•Updated Feb 7, 2019Feb 7, 2019

    • IMC-Shoreline

      Public
      0•0•0•0•Updated Dec 1, 2018Dec 1, 2018

    • Ritornello

      Public
      Ritornello is a high fidelity control free ChIP-seq peak calling algorithm
      C++
      •
      GNU General Public License v3.0
      •2•13•1•0•Updated Aug 23, 2018Aug 23, 2018

    • BatchEffectRemoval

      Public
      Python
      •2•0•0•0•Updated May 11, 2018May 11, 2018

    • adversarial-examples

      Public
      Code to reproduce results in the paper "Defending against Adversarial Images using Basis Functions Transformations"
      Python
      •6•5•2•0•Updated Apr 16, 2018Apr 16, 2018

    • oocPCA

      Public
      Out-of-Core Principal Component Analysis
      C++
      •2•18•3•0•Updated Dec 25, 2017Dec 25, 2017

    • deepcytof

      Public
      Python
      •
      Apache License 2.0
      •13•17•0•0•Updated Mar 15, 2017Mar 15, 2017

    • pcafast

      Public
      Matlab implementation of a randomized algorithm for principal component analysis
      MATLAB
      •4•4•0•0•Updated Mar 13, 2017Mar 13, 2017