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@HCGB-IGTP High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute

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    13 repositories

    • HCGB.IGTP.DAnalysis

      Public
      Differential expression/methylation analysis for several platform and techniques
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 13, 2024Dec 13, 2024

    • draculR.HCGB

      Public
      Public repository for the DraculR Shiny App. used to calculate haemolysis in HTS miRNA sequencing data.
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • XICRA

      Public
      Small RNAseq pipeline for paired-end reads
      pythonsmallrna-seqpipelinemirna
      Python
      •
      MIT License
      •3•7•8•0•Updated Oct 18, 2024Oct 18, 2024

    • HCGB_python_functions

      Public
      useful python functions
      Python
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • wanderer_v2

      Public
      Shell
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • XICRA.stats

      Public
      R package for descriptive statistics of XICRA output results
      HTML
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 11, 2024Jun 11, 2024

    • BacterialTyper

      Public
      Bacterial identification pipeline
      Python
      •
      MIT License
      •0•4•12•3•Updated Apr 3, 2024Apr 3, 2024

    • RNA_seq_pipe

      Public
      Python
      •1•1•0•0•Updated Aug 24, 2023Aug 24, 2023

    • HCVgenotool

      Public
      Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Oct 7, 2021Oct 7, 2021

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated May 18, 2021May 18, 2021

    • spaTyper

      Public
      Computational method for finding spa types.
      Python
      •
      GNU Lesser General Public License v3.0
      •4•7•0•0•Updated Mar 23, 2021Mar 23, 2021

    • islandpath

      Public
      IslandPath standalone software
      Perl
      •
      GNU General Public License v3.0
      •4•1•0•0•Updated Oct 2, 2020Oct 2, 2020

    • pyan

      Public
      pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which functions are called and how often; there are various tools that will generate a call graph in that way, usually using debugger or profiling trace hooks …
      Python
      •
      GNU General Public License v2.0
      •126•1•0•0•Updated Apr 11, 2020Apr 11, 2020