Repositories list

• splinebox

  Public
  A python package for fitting splines.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•14•8•0•Updated Dec 20, 2024Dec 20, 2024

• depalma-napari-omero

  Public
  Napari user interface with connection to OMERO.

  cancer-imaging-research

  Rust

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

• mousetumortrack

  Public
  Tracking tumor nodules in mice CT scans.

  trackingcancer-imaging-research

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• pyxudeconv

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• napari-label-focus

  Public
  Easily focus the view on selected elements from a Labels layer.

  napari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• napari-splinebox

  Public
  A napari plugin to create splines.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• mousetumornet

  Public
  A model for lung tumor nodules segmentation in mice CT scans.

  cancer-imaging-researchimage-segmentationnapari-plugin+ 1nnunet-v2

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• image-analysis-field-guide

  Public
  Scientific image analysis resources and examples.

  image-analysisjupyter-book

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Sep 14, 2024Sep 14, 2024

• mouselungseg

  Public
  Lungs segmentation in mice CT scans

  yolocancer-imaging-researchimage-segmentation+ 2napari-pluginultralytics

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Aug 23, 2024Aug 23, 2024

• napari-adaptive-painting

  Public
  Propagate label annotations in Napari.

  napari-pluginimage-annotation-tool

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• Mito_nucleoid_distances

  Public
  Code for measuring the distance between nucleoids on mitochondira

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

• dask

  Public
  Parallel computing with task scheduling

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1.7k•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• basics-GPU-image-proc

  Public
  Material for the imaging lunch "Basics of gpu acceleration for image processing

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Aug 13, 2024Aug 13, 2024

• nellie

  Public
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

  Python

  •

  Other

  •4•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• imaging-plaza-runnable-examples

  Public
  Runnable examples for the Imaging Plaza platform.

  0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• api-py-algos

  Public
  API to run Python-based image processing algorithms

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 17, 2024Jun 17, 2024

• ij-plugin-pyalgos

  Public
  ImageJ/Fiji plugin to run Python-based image processing algorithms

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• qupath-extension-pyalgos

  Public
  Qupath extension to run Pyhton-based image processing algorithms

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 17, 2024Jun 17, 2024

• ImagingLunch_ImagesInPython

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Jun 12, 2024Jun 12, 2024

• pyxu-ldct-reader

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Jun 6, 2024Jun 6, 2024

• napari-melt-pool-tracker

  Public
  Napari plugin for tracking the width and depth of the melt pool and keyhole in x-ray images of laser powder bed fusion experiments.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated May 28, 2024May 28, 2024

• napari-z-plotter

  Public
  Interactively plot the image intensity along the depth axis of a 3D image dataset.

  napari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated May 24, 2024May 24, 2024

• pyxu-tutorial

  Public
  Material accompanying the Pyxu tutorial presentation

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Mar 26, 2024Mar 26, 2024

• napari-rembg

  Public
  AI-based image segmentation in Napari.

  image-segmentationnapari-pluginrembg+ 1segment-anything-model

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•1•0•Updated Feb 17, 2024Feb 17, 2024

• pyxu-cone-beam

  Public
  Computational Tomography Suite for Cone Beam X-Ray data using Pyxu.

  Python

  •

  MIT License

  •0•2•0•0•Updated Jan 29, 2024Jan 29, 2024

• napari-floodfill

  Public
  Interactive object annotation in Napari using a flood fill tool.

  image-processingnapari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jan 17, 2024Jan 17, 2024

• napari-orientationpy

  Public
  Analyze orientations in 2D, 3D, and RGB images in Napari.

  image-processingnapari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

• napari-woggle-opacity

  Public
  Dynamically change layer opacity in Napari.

  napari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• napari-live-histogram

  Public
  Display the image histogram in Napari.

  napari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• napari-remove-objects

  Public
  A simple tool to remove objects in a Labels layer in Napari by clicking on them.

  napari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024