Repositories list

• Biostrings

  Public
  Efficient manipulation of biological strings

  bioconductor-packagecore-package

  R

  •16•58•15•1•Updated Dec 14, 2024Dec 14, 2024

• BiocSlack

  Public
  CSS

  •

  MIT License

  •0•1•0•0•Updated Dec 14, 2024Dec 14, 2024

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Shell

  •

  Artistic License 2.0

  •31•73•16•6•Updated Dec 13, 2024Dec 13, 2024

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •40•25•13•11•Updated Dec 13, 2024Dec 13, 2024

• bioc2u

  Public
  Building containers and holding some code for bioc2u, an attempt at extending r2u to all bioc packages, and provide precompiled binaries for ubuntu systems

  Shell

  •0•3•3•0•Updated Dec 10, 2024Dec 10, 2024

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •87•122•7•1•Updated Dec 9, 2024Dec 9, 2024

• pwalign

  Public
  Perform pairwise sequence alignments

  bioconductor-package

  R

  •0•1•7•0•Updated Dec 6, 2024Dec 6, 2024

• bioc2u-builder

  Public
  Scripts for building bioc2u

  0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• r2u

  Public
  Rocker for use with r2u repository

  Shell

  •3•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •24•41•9•0•Updated Dec 4, 2024Dec 4, 2024

• bioc_coc_multilingual

  Public
  Multilingual version of the Bioconductor Code of Conduct

  bioconductorhacktoberfest

  CSS

  •14•1•5•0•Updated Dec 3, 2024Dec 3, 2024

• IRanges

  Public
  Foundation of integer range manipulation in Bioconductor

  bioconductor-packagecore-package

  R

  •10•22•9•3•Updated Dec 3, 2024Dec 3, 2024

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-package

  R

  •9•26•18•0•Updated Dec 2, 2024Dec 2, 2024

• BBS

  Public
  The Bioconductor Build System

  Shell

  •11•9•48•2•Updated Dec 2, 2024Dec 2, 2024

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •18•8•12•1•Updated Dec 2, 2024Dec 2, 2024

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  0•0•0•0•Updated Nov 30, 2024Nov 30, 2024

• HDF5Array

  Public
  HDF5 datasets as array-like objects in R

  bioconductor-packagecore-package

  C

  •14•11•4•1•Updated Nov 29, 2024Nov 29, 2024

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•26•2•Updated Nov 28, 2024Nov 28, 2024

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•31•7•0•Updated Nov 27, 2024Nov 27, 2024

• Rsamtools

  Public
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

  bioconductor-packagecore-package

  R

  •

  Other

  •27•27•13•2•Updated Nov 27, 2024Nov 27, 2024

• Rhtslib

  Public
  HTSlib high-throughput sequencing library as an R package

  bioconductor-packagecore-package

  C

  •13•11•1•0•Updated Nov 27, 2024Nov 27, 2024

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  CSS

  •3•2•0•0•Updated Nov 24, 2024Nov 24, 2024

• RaggedExperiment

  Public
  Matrix-like representations of mutation and CN data

  data-structuremutationscopynumber+ 1core-package

  R

  •3•4•3•0•Updated Nov 22, 2024Nov 22, 2024

• txdbmaker

  Public
  A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

  bioconductor-packagecore-package

  R

  •1•2•6•0•Updated Nov 21, 2024Nov 21, 2024

• BiocIO

  Public
  Standard input / output framework for use by Bioconductor packages

  bioconductor-packagecore-package

  R

  •0•1•1•0•Updated Nov 21, 2024Nov 21, 2024

• biocblog

  Public
  A Quarto blog for Bioconductor community

  blogcommunityr+ 4bioconductorhacktoberfestquartohacktoberfest2022

  HTML

  •27•9•6•1•Updated Nov 21, 2024Nov 21, 2024

• BiocClassesWorkingGroup

  Public
  Notes and Discussion concerning recommended classes for Bioconductor

  0•2•12•0•Updated Nov 21, 2024Nov 21, 2024

• bio-web-stats

  Public
  Code base for replacement of stats.bioconductor.org (download_stats)

  Python

  •0•1•3•0•Updated Nov 20, 2024Nov 20, 2024

• BiocWorkingGroups

  Public
  Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

  communitybookworking-group+ 2bioconductorguidelines

  TeX

  •12•8•0•0•Updated Nov 20, 2024Nov 20, 2024

• biocViews

  Public
  Categorized views of R package repositories

  bioconductor-packagecore-package

  R

  •4•4•3•3•Updated Nov 19, 2024Nov 19, 2024