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@AdaptiveMotorControlLab Mathis Lab @ EPFL

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    21 repositories

    • CellSeg3D

      Public
      A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
      segmentation3d
      Jupyter Notebook
      •
      MIT License
      •12•74•3•1•Updated Dec 23, 2024Dec 23, 2024

    • pydensecrf

      Public
      Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs with gaussian edge potentials.
      C++
      •
      MIT License
      •418•1•0•0•Updated Dec 23, 2024Dec 23, 2024

    • CEBRA

      Public
      Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
      machine-learningpytorchneuroscience-methodscontrastive-learning
      Python
      •
      Other
      •78•928•7•7•Updated Dec 17, 2024Dec 17, 2024

    • AROS

      Public
      💍
      Jupyter Notebook
      •
      Apache License 2.0
      •2•8•0•0•Updated Nov 5, 2024Nov 5, 2024

    • AllenBrainConnectivityGraph

      Public
      Create a connectivity map based on injection sites and target sites of regions of interest.
      Python
      •
      MIT License
      •0•6•0•0•Updated Sep 29, 2024Sep 29, 2024

    • MouseArmTransformer

      Public
      A lifting transformer used to generate 3D DeepLabCut estimates for an adult mouse forelimb
      Jupyter Notebook
      •
      Apache License 2.0
      •0•5•1•0•Updated Sep 21, 2024Sep 21, 2024

    • .github

      Public
      1•0•0•0•Updated Sep 21, 2024Sep 21, 2024

    • AmadeusGPT

      Public
      We turn natural language descriptions of behaviors into machine-executable code
      deeplabcutllmschatgptsegment-anythingcebraamadeusgpt
      Python
      •
      Apache License 2.0
      •8•206•0•0•Updated Aug 12, 2024Aug 12, 2024

    • CEBRA-demos

      Public
      CEBRA Demo Notebooks. Please see all of them at the URL below:
      Jupyter Notebook
      •
      Other
      •4•12•0•1•Updated Jul 25, 2024Jul 25, 2024

    • ml-agents

      Public
      The Unity Machine Learning Agents Toolkit (ML-Agents) is an open-source project that enables games and simulations to serve as environments for training intelligent agents using deep reinforcement learning and imitation learning.
      C#
      •
      Other
      •4.2k•0•0•0•Updated May 3, 2024May 3, 2024

    • SegementationLabeler

      Public
      Python
      •0•0•0•0•Updated Mar 23, 2024Mar 23, 2024

    • modelzoo-figures

      Public
      SuperAnimal models supporting data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•14•0•1•Updated Feb 26, 2024Feb 26, 2024

    • DLC2Kinematics

      Public
      a module for kinematic analysis of deeplabcut outputs
      kinematicsdeeplabcutkinematik
      Jupyter Notebook
      •
      Apache License 2.0
      •26•135•3•0•Updated Dec 13, 2023Dec 13, 2023

    • CEBRA-assets

      Public
      Web assets for CEBRA (cebra.ai) and CEBRA DOCS!
      0•0•0•0•Updated Nov 24, 2023Nov 24, 2023

    • cebra-figures

      Public
      Figures, tables and stats for Schneider, Lee and Mathis 2022: Learnable latent embeddings for joint behavioral and neural analysis.
      Jupyter Notebook
      •
      Other
      •2•19•0•2•Updated Oct 6, 2023Oct 6, 2023

    • Camera_Control

      Public
      a Python API to record video & system timestamps from Imaging Source USB cameras
      Python
      •
      MIT License
      •13•66•5•0•Updated Feb 21, 2023Feb 21, 2023

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
      Python
      •
      GNU Lesser General Public License v3.0
      •1.7k•1•0•0•Updated Oct 26, 2022Oct 26, 2022

    • JoystickControlSystem

      Public
      joystick system used in Mathis et al, 2017
      Python
      •
      MIT License
      •2•4•0•0•Updated Aug 23, 2022Aug 23, 2022

    • SplitWheelVR

      Public
      follow along for updates and information on our 2-wheel VR system for mice
      0•0•0•0•Updated Jul 2, 2022Jul 2, 2022

    • DeepLabCut-Workshop-Materials

      Public
      Workshop material for using DeepLabCut
      Python
      •36•1•0•0•Updated Apr 28, 2021Apr 28, 2021

    • Docker4DeepLabCut2.0

      Public
      Docker container for running DeepLabCut2.0 (linux support only)
      Jupyter Notebook
      •26•0•0•0•Updated Nov 15, 2019Nov 15, 2019