From dc1473c12b59a766eeb34a367bb982840641b13b Mon Sep 17 00:00:00 2001
From: pgleeson <p.gleeson@gmail.com>
Date: Tue, 25 Jun 2024 14:58:09 +0100
Subject: [PATCH] Initial jupyterlab tests

---
 Dockerfile_JL |  4 ++++
 build_jl.sh   |  4 ++++
 run_jl.sh     | 29 +++++++++++++++++++++++++++++
 stop_jl.sh    |  6 ++++++
 4 files changed, 43 insertions(+)
 create mode 100644 Dockerfile_JL
 create mode 100755 build_jl.sh
 create mode 100755 run_jl.sh
 create mode 100755 stop_jl.sh

diff --git a/Dockerfile_JL b/Dockerfile_JL
new file mode 100644
index 0000000..8633881
--- /dev/null
+++ b/Dockerfile_JL
@@ -0,0 +1,4 @@
+# syntax=docker/dockerfile:1
+
+FROM quay.io/jupyter/base-notebook
+RUN pip install --no-cache-dir pyneuroml
\ No newline at end of file
diff --git a/build_jl.sh b/build_jl.sh
new file mode 100755
index 0000000..8d409b7
--- /dev/null
+++ b/build_jl.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+
+version=$(<VERSION) # Read version of Dockerfile from file VERSION
+docker build "$@" -t "openworm/openworm_jl:$version" -f Dockerfile_JL .
diff --git a/run_jl.sh b/run_jl.sh
new file mode 100755
index 0000000..cfb609d
--- /dev/null
+++ b/run_jl.sh
@@ -0,0 +1,29 @@
+#!/bin/bash
+
+OW_OUT_DIR=/home/ow/shared
+HOST_OUT_DIR=$PWD
+
+version=$(<VERSION) # Read version of Dockerfile from file VERSION
+
+xhost +
+
+docker run --rm \
+  --name openworm_jl_$version \
+  --device=/dev/dri:/dev/dri \
+  -e DISPLAY=$DISPLAY \
+  -e OW_OUT_DIR=$OW_OUT_DIR \
+  -v /tmp/.X11-unix:/tmp/.X11-unix:rw \
+  --privileged \
+  -v $HOST_OUT_DIR:$OW_OUT_DIR:rw \
+  -p 8889:8888 \
+  openworm/openworm_jl:$version \
+  start-notebook.py \
+  --NotebookApp.token='openworm' &
+
+sleep 3
+echo
+echo -e "To access the running JupyterLab instance, go to:"
+echo -e "     http://localhost:8889/lab?token=openworm"
+echo
+echo -e "To stop the service type: ./stop_jl.sh"
+echo
diff --git a/stop_jl.sh b/stop_jl.sh
new file mode 100755
index 0000000..597edf9
--- /dev/null
+++ b/stop_jl.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+version=$(<VERSION) # Read version of Dockerfile from file VERSION
+
+docker stop openworm_jl_${version}
+docker rm openworm_jl_${version}