diff --git a/src/core/public/chrome/nav_group/nav_group_service.ts b/src/core/public/chrome/nav_group/nav_group_service.ts
index 583535093874..88689d88f2fc 100644
--- a/src/core/public/chrome/nav_group/nav_group_service.ts
+++ b/src/core/public/chrome/nav_group/nav_group_service.ts
@@ -261,14 +261,17 @@ export class ChromeNavGroupService {
       if (appId && navGroupMap) {
         const appIdNavGroupMap = new Map<string, Set<string>>();
         // iterate navGroupMap
-        Object.keys(navGroupMap).forEach((navGroupId) => {
-          navGroupMap[navGroupId].navLinks.forEach((navLink) => {
-            const navLinkId = navLink.id;
-            const navGroupSet = appIdNavGroupMap.get(navLinkId) || new Set();
-            navGroupSet.add(navGroupId);
-            appIdNavGroupMap.set(navLinkId, navGroupSet);
+        Object.keys(navGroupMap)
+          // Nav group of Hidden status should be filtered out when counting navGroups the currentApp belongs to
+          .filter((navGroupId) => navGroupMap[navGroupId].status !== NavGroupStatus.Hidden)
+          .forEach((navGroupId) => {
+            navGroupMap[navGroupId].navLinks.forEach((navLink) => {
+              const navLinkId = navLink.id;
+              const navGroupSet = appIdNavGroupMap.get(navLinkId) || new Set();
+              navGroupSet.add(navGroupId);
+              appIdNavGroupMap.set(navLinkId, navGroupSet);
+            });
           });
-        });
 
         const navGroups = appIdNavGroupMap.get(appId);
         if (navGroups && navGroups.size === 1) {
diff --git a/src/plugins/workspace/public/plugin.ts b/src/plugins/workspace/public/plugin.ts
index dd4dc78fdf2c..5c426a14851c 100644
--- a/src/plugins/workspace/public/plugin.ts
+++ b/src/plugins/workspace/public/plugin.ts
@@ -150,15 +150,15 @@ export class WorkspacePlugin
           /**
            * The following logic determines whether a navigation group should be hidden or not based on the workspace's feature configurations.
            * It checks the following conditions:
-           * 1. The navigation group is not a system-level group (system groups are always visible).
+           * 1. The navigation group is not a system-level group (system groups are always visible except all use case).
            * 2. The current workspace has feature configurations set up.
-           * 3. The current workspace's use case it not "All use case".
+           * 3. The current workspace's use case is not "All use case".
            * 4. The current navigation group is not included in the feature configurations of the workspace.
            *
            * If all these conditions are true, it means that the navigation group should be hidden.
            */
           if (
-            navGroup.type !== NavGroupType.SYSTEM &&
+            (navGroup.type !== NavGroupType.SYSTEM || navGroup.id === ALL_USE_CASE_ID) &&
             currentWorkspace.features &&
             getFirstUseCaseOfFeatureConfigs(currentWorkspace.features) !== ALL_USE_CASE_ID &&
             !isNavGroupInFeatureConfigs(navGroup.id, currentWorkspace.features)