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TASK-5564 - Update data sources for CellBase 6.2 #696

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@jtarraga jtarraga commented Jul 1, 2024

Update data sources for CellBase 6.2

imedina and others added 30 commits January 21, 2024 02:10
…es and taking into account the version from config file, and fix sonnar issues, #TASK-5775, #TASK-5564
…dding log messages, removing hardcode filenames, sonnar issues,..., #TASK-5775, #TASK-5564
… adding log messages, removing hardcode filenames, sonnar issues,..., #TASK-5775, #TASK-5564
… file, adding log messages, removing hardcode filenames, sonnar issues,..., #TASK-5775, #TASK-5564
…to take into account the version for miRBase and miRTarBase, #TASK-5775, #TASK-5564
…nd HGMD; and fix some sonnar issues, #TASK-5775, #TASK-5564
…URLProperties changes, #TASK-5775, #TASK-5564
…URLProperties changes, #TASK-5775, #TASK-5564
… Expression Atlas, Gene Disease Annotation, gnomAD Constraints and GO Annotation downloaders, #TASK-5775, #TASK-5564
… files, and rename some constants, #TASK-5776, #TASK-5564
…ariantAnnotationCalculator file size, #TASK-6426, #TASK-5564
…ndard values, e.g. <deletion> to <DEL>, #TASK-5576, #TASK-5564
…d by a given species, and update download options, #TASK-5575, #TASK-5564
…d update ontology downloader to take it into account, #TASK-5575, #TASK-5564
…les; improve summary log and update downloader managers according to these changes, #TASK-5575, #TASK-5564
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2 participants