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Issue with recent versions of matplotlib #15

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JonHum opened this issue Aug 30, 2024 · 1 comment
Open

Issue with recent versions of matplotlib #15

JonHum opened this issue Aug 30, 2024 · 1 comment

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@JonHum
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JonHum commented Aug 30, 2024

Hi,
I am trying to run the test data, and encountered an error at this step:
ERROR:snakemake.logging:Error in rule plot_pileups_compare_samples: jobid: 80
The associated log states ImportError: cannot import name 'register_cmap' from 'matplotlib.cm' (/quaich/.snakemake/conda/40473205122511e8dc65afef80129cd2_/lib/python3.12/site-packages/matplotlib/cm.py) which I believe is related to this this earlier issue with cooltools and matplotlib updates.

Any way to go around this? Thanks a lot in advance!

@bgizelarMCW
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Had this same issue, and the temp work around is to downgrade matplotlib to verison 3.6.0
Inside your conda env for quaich, run:
pip3 install matplotlib==3.6.0

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