diff --git a/workflow/Snakefile b/workflow/Snakefile index cb9ee35..9cebe54 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -904,7 +904,7 @@ rule make_saddles: mem_mb=8 * 1024, runtime=60, shell: - "cooltools compute-saddle -o {params.prefix} {params.args} {params.distargs} {input.cooler}::resolutions/{wildcards.resolution} {input.eigenvector} {input.expected}" + "cooltools compute-saddle -o {params.prefix} {params.args} {params.distargs} --n-bins {wildcards.bins} {input.cooler}::resolutions/{wildcards.resolution} {input.eigenvector} {input.expected}" rule make_expected: