From 802f69c9949cd81b986fa96cf79f95d38d51b909 Mon Sep 17 00:00:00 2001 From: Anton Goloborodko Date: Thu, 28 Mar 2024 11:57:07 +0100 Subject: [PATCH] Update doc/protocols_pipelines.rst Co-authored-by: Nezar Abdennur --- doc/protocols_pipelines.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/protocols_pipelines.rst b/doc/protocols_pipelines.rst index cf65786..4851a3f 100644 --- a/doc/protocols_pipelines.rst +++ b/doc/protocols_pipelines.rst @@ -109,7 +109,7 @@ Technical tips Pairtools recognize .bam, .gz and .lz4 file extensions and automatically compress and decompress files on the fly. Compression saves space, and reduces I/O overhead at a relatively minor CPU cost. -- Parallelize tasks and manage resources effectively for faster execution. +- **Parallelize tasks and manage resources effectively for faster execution.** Each pairtool has the CLI flags --nproc-in and --nproc-out to control the number of cores dedicated to input decompression and output compression. Additionally, `pairtools sort` parallelizes sorting with `--nproc`.ß