To access a value by position, use ser.iloc[pos] chroffset = self.clr.offset(region[0])

[jiangshan529]

Hi, dear authors, I have used coolpup a lot previously, but recently it has some problem(maybe a version problem of some packages):
coolpup.py aa.cool bb.bed --outname cc.txt --flank 250000 --local --n_proc 16 --clr_weight_name ""
python3.9/site-packages/coolpuppy/coolpup.py:919: FutureWarning: Series.getitem treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use ser.iloc[pos]
chroffset = self.clr.offset(region[0])

and it been stucked here and I cannot get any output. any suggestions?

[jiangshan529]

Hi, dear authors, I have used coolpup a lot previously, but recently it has some problem(maybe a version problem of some packages): coolpup.py aa.cool bb.bed --outname cc.txt --flank 250000 --local --n_proc 16 --clr_weight_name "" python3.9/site-packages/coolpuppy/coolpup.py:919: FutureWarning: Series.getitem treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use ser.iloc[pos] chroffset = self.clr.offset(region[0])

and it been stucked here and I cannot get any output. any suggestions?

The package is installed in a microenvironment, I tried to delete and reinstall, but it still has the problem.

[efriman]

Hi @jiangshan529 you must be using an old version, this was changed a long time ago. Try to update with pip or the latest git version.

[YCMaCY]

Hi @jiangshan529 you must be using an old version, this was changed a long time ago. Try to update with pip or the latest git version.

Hi，I ran into the same problem, my coolpup version is 1.1.0, python version is 3.12 Install using conda, my command is: coolpup.py RS_Micro_2kb.mcool::/resolutions/10000 RS.bed -p 28 --features_format bed

[Phlya]

Hi，I ran into the same problem, my coolpup version is 1.1.0, python version is 3.12 Install using conda, my command is: coolpup.py RS_Micro_2kb.mcool::/resolutions/10000 RS.bed -p 28 --features_format bed

What is the problem exactly? The original question is not clear, since there is no error (only a warning that could be simply ignored), and "stuck and getting no output" is not exactly helpful, since with some datasets it can take a very long time to run...