From ce99816cd679e159d354ff62d2913f33774b310b Mon Sep 17 00:00:00 2001
From: GitHub Action <action@github.com>
Date: Fri, 12 Apr 2024 18:55:34 +0000
Subject: [PATCH] Update documentation

---
 .../Bonsai.ONIX/Nodes/AnalogIODevice.html     |  8 +++++++
 .../load-analog-data.py                       | 14 +++++++++++
 .../Bonsai.ONIX/Nodes/AnalogIODevice.rst.txt  |  5 ++++
 _static/bonsai/workflows/AnalogIO.bonsai      | 23 +++++++++++++++++--
 _static/bonsai/workflows/AnalogIO.svg         |  4 ++--
 _static/bonsai/workflows/load-analog-data.py  | 14 +++++++++++
 searchindex.js                                |  2 +-
 7 files changed, 65 insertions(+), 5 deletions(-)
 create mode 100644 _downloads/5dbab7913e2369375757c80cc6cc682b/load-analog-data.py
 create mode 100644 _static/bonsai/workflows/load-analog-data.py

diff --git a/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.html b/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.html
index 3e7be943..73703055 100644
--- a/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.html	
+++ b/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.html	
@@ -551,6 +551,13 @@ <h2>Configuration<a class="headerlink" href="#configuration" title="Link to this
 </tbody>
 </table>
 </section>
+<section id="loading-scripts">
+<h2>Loading Scripts<a class="headerlink" href="#loading-scripts" title="Link to this heading">#</a></h2>
+<p>The following scripts can be used to load the data produced by this workflow in Python (using Numpy):</p>
+<ul class="simple">
+<li><p><a class="reference download internal" download="" href="../../../_downloads/5dbab7913e2369375757c80cc6cc682b/load-analog-data.py"><code class="xref download docutils literal notranslate"><span class="pre">load-analog-data.py</span></code></a></p></li>
+</ul>
+</section>
 </section>
 
     <script type="text/javascript">
@@ -607,6 +614,7 @@ <h2>Configuration<a class="headerlink" href="#configuration" title="Link to this
   <nav class="bd-toc-nav page-toc">
     <ul class="visible nav section-nav flex-column">
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#configuration">Configuration</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#loading-scripts">Loading Scripts</a></li>
 </ul>
   </nav></div>
 
diff --git a/_downloads/5dbab7913e2369375757c80cc6cc682b/load-analog-data.py b/_downloads/5dbab7913e2369375757c80cc6cc682b/load-analog-data.py
new file mode 100644
index 00000000..6deeb963
--- /dev/null
+++ b/_downloads/5dbab7913e2369375757c80cc6cc682b/load-analog-data.py
@@ -0,0 +1,14 @@
+import numpy as np
+import matplotlib.pyplot as plt
+
+# Load data from AnalogIO workflow
+suffix = '2024-04-11T12_24_25'; # Change to match file names' suffix
+
+analog_time = np.fromfile('analog-clock_' + suffix + '.raw', dtype=np.uint64) / 250e6
+analog_data = np.fromfile('analog-data_' + suffix + '.raw', dtype=np.float32)
+analog_data = np.reshape(analog_data, (-1, 12))
+
+
+# plot the first 100k samples on each channel (1 second of data)
+plt.close('all')
+plt.plot(analog_time[0:100000], analog_data[0:100000, :])
diff --git a/_sources/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst.txt b/_sources/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst.txt
index 78ce0bd0..dbd421ce 100644
--- a/_sources/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst.txt	
+++ b/_sources/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst.txt	
@@ -73,3 +73,8 @@ options.
       - The direction of the channel. If set to Output, the measured voltage is
         automatically looped back through the analog input.
 
+Loading Scripts
+--------------------------
+The following scripts can be used to load the data produced by this workflow in Python (using Numpy):
+
+- :download:`load-analog-data.py <../../../_static/bonsai/workflows/load-analog-data.py>` 
diff --git a/_static/bonsai/workflows/AnalogIO.bonsai b/_static/bonsai/workflows/AnalogIO.bonsai
index 1776309a..3c14f4e1 100644
--- a/_static/bonsai/workflows/AnalogIO.bonsai
+++ b/_static/bonsai/workflows/AnalogIO.bonsai
@@ -1,7 +1,8 @@
 <?xml version="1.0" encoding="utf-8"?>
-<WorkflowBuilder Version="2.6.2"
+<WorkflowBuilder Version="2.8.1"
                  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
                  xmlns:p1="clr-namespace:Bonsai.ONIX;assembly=Bonsai.ONIX"
+                 xmlns:dsp="clr-namespace:Bonsai.Dsp;assembly=Bonsai.Dsp"
                  xmlns="https://bonsai-rx.org/2018/workflow">
   <Workflow>
     <Nodes>
@@ -69,14 +70,32 @@
       <Expression xsi:type="MemberSelector">
         <Selector>Data</Selector>
       </Expression>
+      <Expression xsi:type="Combinator">
+        <Combinator xsi:type="dsp:MatrixWriter">
+          <dsp:Path>analog-data_.raw</dsp:Path>
+          <dsp:Suffix>Timestamp</dsp:Suffix>
+          <dsp:Overwrite>false</dsp:Overwrite>
+          <dsp:Layout>ColumnMajor</dsp:Layout>
+        </Combinator>
+      </Expression>
       <Expression xsi:type="MemberSelector">
         <Selector>Clock</Selector>
       </Expression>
+      <Expression xsi:type="Combinator">
+        <Combinator xsi:type="dsp:MatrixWriter">
+          <dsp:Path>analog-clock_.raw</dsp:Path>
+          <dsp:Suffix>Timestamp</dsp:Suffix>
+          <dsp:Overwrite>false</dsp:Overwrite>
+          <dsp:Layout>ColumnMajor</dsp:Layout>
+        </Combinator>
+      </Expression>
     </Nodes>
     <Edges>
       <Edge From="1" To="2" Label="Source1" />
       <Edge From="2" To="3" Label="Source1" />
-      <Edge From="2" To="4" Label="Source1" />
+      <Edge From="2" To="5" Label="Source1" />
+      <Edge From="3" To="4" Label="Source1" />
+      <Edge From="5" To="6" Label="Source1" />
     </Edges>
   </Workflow>
 </WorkflowBuilder>
\ No newline at end of file
diff --git a/_static/bonsai/workflows/AnalogIO.svg b/_static/bonsai/workflows/AnalogIO.svg
index 0a134fc1..0e3c5e01 100644
--- a/_static/bonsai/workflows/AnalogIO.svg
+++ b/_static/bonsai/workflows/AnalogIO.svg
@@ -1,3 +1,3 @@
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diff --git a/_static/bonsai/workflows/load-analog-data.py b/_static/bonsai/workflows/load-analog-data.py
new file mode 100644
index 00000000..6deeb963
--- /dev/null
+++ b/_static/bonsai/workflows/load-analog-data.py
@@ -0,0 +1,14 @@
+import numpy as np
+import matplotlib.pyplot as plt
+
+# Load data from AnalogIO workflow
+suffix = '2024-04-11T12_24_25'; # Change to match file names' suffix
+
+analog_time = np.fromfile('analog-clock_' + suffix + '.raw', dtype=np.uint64) / 250e6
+analog_data = np.fromfile('analog-data_' + suffix + '.raw', dtype=np.float32)
+analog_data = np.reshape(analog_data, (-1, 12))
+
+
+# plot the first 100k samples on each channel (1 second of data)
+plt.close('all')
+plt.plot(analog_time[0:100000], analog_data[0:100000, :])
diff --git a/searchindex.js b/searchindex.js
index 065b34ba..e1eceaf3 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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"titles": ["Getting Started", "Troubleshooting", "Usage Warnings", "What is ONIX?", "EIB-64", "EIB-64L", "Adapters &amp; EIBs", "64-Channel Nano-Z Adapter", "64-Channel Omnetics Adpater", "Breakout Board", "Breakout Board Guide", "Coaxial Commutators", "Connections and Cables", "BNO055", "DS90UB9X Raw Device", "HS64 Electrical Stimulator", "FMC Host Analog IO Device", "FMC Host Clock Output Device", "FMC Host Digital IO Device", "FMC Link Controller", "Heartbeat", "ONI Datasheets", "Load Test Device", "Memory Usage Monitor", "Neuropixels V1", "HS64 Optical Stimulator", "RHD2164", "RHS2116", "RHS2116 Trigger", "Test0 Device", "TS4231 Array for Vive V1 Base Stations", "Headstage-64", "Test Board for Headstage-64", "Neuropixels-1.0 Headstage", "Neuropixels-1.0e Headstage", "Headstages", "Coaxial Data Serialization &amp; Power", "Setup", "Tethered Headstage Voltages", "Making Coaxial Tethers", "3D-Tracking Lighthouses", "Setup", "Miniscopes", "PCIe Bracket Assembly", "PCIe Host", 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73, 74, 75, 78, 80, 85, 86], "order": [2, 3, 10, 14, 15, 16, 18, 19, 27, 30, 73, 74, 83, 86], "an": [2, 3, 7, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 36, 37, 39, 41, 47, 48, 50, 52, 54, 56, 61, 63, 66, 70, 72, 73, 74, 75, 78, 82, 83, 85, 86], "overrid": 2, "address": [2, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 47], "distinct": [2, 36], "becaus": [2, 3, 11, 31, 36, 39, 52, 62, 73, 74, 78], "directli": [2, 3, 12, 31, 37, 39, 50], "time": [2, 3, 11, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 36, 63, 73, 74, 75, 78, 83, 86], "compos": 3, "variou": [3, 7, 10, 20, 22, 27, 61, 82, 86], "piec": [3, 12, 39, 43, 75], "three": [3, 16, 33, 36, 39, 48, 82], "major": [3, 36, 39, 82, 83], "point": [3, 31, 38, 39, 63, 77, 78], "rule": 3, "outlin": 3, "structur": [3, 13, 19, 20, 22, 23, 29, 30], "transmit": [3, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 73, 74, 86], "between": [3, 11, 12, 15, 16, 25, 27, 36, 37, 39, 50, 67, 76], "part": [3, 18, 31, 43, 47, 73, 74, 78], "instanc": [3, 10, 18, 36, 50, 73, 74, 78], "intan": [3, 26, 27, 28, 31, 36, 52, 86], "classic": [3, 52], "ephi": [3, 4, 9, 10, 11, 26, 27, 31, 35, 44, 52, 54, 57, 77, 78, 84, 85, 86, 87], "serial": [3, 10, 14, 19, 31, 33, 34, 35, 46, 52, 73, 74], "peripher": [3, 36], "interfac": [3, 4, 5, 11, 36, 46, 47, 50, 52, 54, 73, 74, 75, 87], "spi": [3, 27, 36, 47, 52], "commun": [3, 12, 18, 20, 22, 35, 39, 44, 46, 48, 50, 52, 62, 75], "mani": [3, 27, 38, 50, 61, 75], "non": [3, 14, 18, 19, 36], "interchang": 3, "protocol": [3, 14, 18, 46], "why": [3, 52, 61, 75], "type": [3, 24, 31, 37, 48, 49, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80], "probe": [3, 8, 24, 31, 33, 34, 35, 38, 50, 52, 58, 83], "camera": [3, 10, 14, 35, 36, 60, 70, 72], "usual": [3, 36], "come": [3, 39, 42], "own": [3, 31, 35, 75], "neuro": [3, 52, 54, 75, 87], "design": [3, 4, 5, 9, 10, 11, 27, 31, 42, 44, 48, 52, 62, 73, 74, 75, 78, 82, 83], "unifi": [3, 36], "wide": [3, 15, 25, 27], "varieti": 3, "instrument": [3, 14], "By": [3, 68], "specifi": [3, 14, 15, 17, 18, 49, 64, 66, 68, 69, 71, 77, 78, 80, 86], "should": [3, 17, 18, 19, 23, 26, 27, 37, 38, 39, 47, 48, 49, 73, 74, 78, 86], "organis": 3, "remain": [3, 10, 15, 23, 65], "agnost": [3, 84], "extracellular": [3, 54, 57, 58], "mean": [3, 10, 14, 19, 36], "same": [3, 18, 23, 39, 50, 75, 79], "softwar": [3, 9, 11, 24, 35, 46, 51, 52, 55, 60, 71, 83, 86, 87], "now": [3, 37, 47, 48, 49, 73, 74], "rang": [3, 15, 16, 19, 25, 31, 36, 61], "so": [3, 10, 12, 15, 25, 31, 36, 38, 39, 47, 49, 51, 52, 58], "lab": [3, 42, 44, 47], "do": [3, 10, 12, 14, 18, 28, 31, 36, 47, 49, 52, 54, 67, 73, 74, 75, 76, 79], "spend": 3, "monei": 3, "purchas": [3, 52, 54], "separ": [3, 31, 39], "extra": 3, "tool": [3, 39, 43, 47, 48, 60, 62, 87], "wish": [3, 67, 76], "add": [3, 47], "experi": [3, 10, 50, 87], "addition": [3, 9, 78], "those": [3, 19, 83], "new": [3, 16, 48, 75, 87], "studi": 3, "brain": [3, 44], "backend": 3, "infrastructur": 3, "reus": 3, "control": [3, 9, 10, 11, 14, 18, 21, 25, 26, 27, 29, 31, 36, 39, 46, 56, 57, 65, 68, 70, 71, 72, 75, 79, 85, 86], "almost": 3, "recod": 3, "There": [3, 10, 22, 27, 31, 53, 74, 75, 82, 83], "grow": 3, "appreci": 3, "examin": [3, 73, 74, 85, 86], "natur": [3, 83], "behaviour": 3, "anim": [3, 4, 5, 11, 31, 50, 87], "often": [3, 12, 19], "larger": [3, 39, 63, 73, 74, 75, 77, 78], "intric": 3, "perhap": 3, "experiment": [3, 9, 10, 52, 75], "It": [3, 4, 12, 16, 17, 19, 20, 31, 38, 39, 46, 48, 50, 61, 62, 75, 78, 84, 87], "impair": 3, "littl": 3, "possibl": [3, 12, 18, 31, 46, 67, 82], "achiev": [3, 31], "cours": [3, 54, 61], "import": [3, 31, 36, 39], "reduc": [3, 15, 36, 50, 67, 72], "weight": 3, "overlook": 3, "As": [3, 18, 36, 48, 86], "explor": [3, 87], "arena": [3, 31], "centr": 3, "mass": 3, "rare": 3, "abov": [3, 22, 31, 34, 39, 40, 46, 50], "instead": [3, 12, 31, 52], "side": [3, 36, 75], "introduc": 3, "rotat": [3, 39, 50], "forc": 3, "compens": [3, 36, 39, 68], "torqu": [3, 11], "head": [3, 35, 36, 42], "up": [3, 11, 15, 18, 25, 31, 36, 39, 47, 56, 68], "straight": 3, "allow": [3, 7, 9, 10, 12, 18, 31, 36, 38, 39, 40, 43, 44, 50, 52, 63, 70, 71, 72, 75, 77, 78], "over": [3, 15, 18, 25, 31, 36, 38, 39, 40, 41, 43, 46, 47, 50, 57, 63, 70, 71, 72, 75, 85], "wire": [3, 4, 5, 9, 10, 15, 31, 36, 39, 43], "lighter": 3, "thinner": [3, 39], "compar": [3, 35, 73, 74, 85], "diamet": [3, 36, 39], "extrem": [3, 36], "flexibl": [3, 36, 39], "abl": [3, 31, 39, 47], "doe": [3, 10, 11, 13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 38, 48, 52, 57, 61], "becom": [3, 17, 28, 38], "twist": [3, 11, 50, 56], "maintain": [3, 11], "electr": [3, 4, 5, 11, 21, 31, 39, 67, 76], "rest": [3, 15, 67], "path": [3, 36, 47, 49, 86], "move": [3, 11, 18, 31, 39, 42, 50, 56, 78, 87], "through": [3, 9, 15, 24, 37, 50, 63, 67, 73, 74, 76, 78], "receiv": [3, 14, 16, 18, 19, 22, 28, 30, 31, 39, 57, 79, 83], "inform": [3, 10, 13, 19, 21, 23, 30, 35, 39, 52, 54, 57, 58, 61, 63, 68, 71, 73, 74, 75, 78, 83, 84, 85, 86], "drive": [3, 4, 5, 10, 17, 36, 50], "motor": [3, 11], "activ": [3, 10, 11, 12, 16, 17, 19, 36, 39, 49, 50, 73, 74, 78], "In": [3, 14, 16, 18, 36, 46, 47, 79, 83], "close": [3, 22, 44, 46, 48, 50, 59, 60, 68], "loop": [3, 22, 24, 44, 46, 48, 50, 59, 60, 63, 68, 85], "process": [3, 39, 48, 49, 61, 73, 74, 83], "act": [3, 79], "upon": 3, "optogenet": [3, 25], "stimul": [3, 4, 5, 21, 27, 28, 35, 50, 57, 67, 68, 76, 78, 86], "area": [3, 39, 78], "everi": [3, 27, 30, 36, 47, 75, 82], "certain": 3, "event": [3, 9, 10, 46, 68, 83], "detect": [3, 14, 19, 24, 30, 38, 40, 50], "describ": [3, 18, 31, 33, 34, 36, 39, 58, 61, 86], "much": [3, 31], "pass": [3, 14, 19, 27, 30, 75], "initi": [3, 18, 51, 85, 86], "respons": [3, 22, 60, 73, 74, 75, 78], "primarili": [3, 83], "spent": 3, "challeng": [3, 39], "number": [3, 7, 10, 14, 15, 17, 22, 23, 25, 27, 29, 31, 36, 46, 53, 63, 67, 73, 74, 75, 76, 77, 78, 86], "channel": [3, 4, 5, 6, 11, 15, 16, 19, 20, 24, 25, 26, 27, 31, 36, 41, 50, 54, 57, 58, 63, 73, 74, 75, 76, 77, 78, 85], "increas": [3, 18, 27, 31, 38, 39, 46, 50, 67, 68, 75, 86], "short": [3, 15, 39], "user": [3, 9, 10, 18, 19, 22, 48, 50, 61, 73, 74, 75, 78, 86], "respond": [3, 50, 67, 76], "timescal": 3, "biolog": 3, "within": [3, 15, 17, 19, 25, 36, 65, 75, 77, 78], "integr": [3, 4, 35, 52, 77, 78], "neuron": 3, "reli": 3, "slower": 3, "transfer": [3, 86], "characterist": [3, 36, 39], "typic": [3, 19, 27, 36, 39, 46, 56, 80], "would": [3, 10], "sever": [3, 36, 39, 50, 75], "ten": 3, "millisecond": [3, 44], "consider": 3, "durat": [3, 15, 25, 67, 76], "notabl": 3, "longer": [3, 39], "averag": 3, "action": [3, 9, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 67, 73, 74, 76], "potenti": [3, 31, 36, 75, 83], "around": [3, 64, 66, 68, 69, 73, 74, 78, 80], "m": [3, 13, 57], "ha": [3, 9, 10, 13, 17, 19, 28, 31, 33, 34, 38, 39, 43, 46, 48, 49, 61, 71, 73, 74, 75, 83], "shorter": [3, 39], "150": [3, 36], "microsecond": [3, 15, 25, 78], "slot": [3, 43, 47, 48, 50, 75, 82, 86], "quickli": [3, 47, 63, 75, 85], "freed": 3, "itself": [3, 12, 16, 27, 36, 37, 38, 39, 50], "overhead": [3, 63, 73, 74, 77, 78], "complex": [3, 31, 78], "analysi": [3, 73, 74], "extract": [3, 48], "phenomenon": 3, "interest": [3, 35], "electrod": [4, 5, 15, 31, 35, 58, 73, 74], "support": [4, 47, 52, 78, 85, 86], "optic": [4, 5, 9, 11, 21, 30, 67, 76], "small": [4, 10, 31, 39, 43, 49], "e": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "g": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "mous": [4, 67, 73, 74, 76, 78], "electrophysiologi": [4, 5, 57, 58, 83], "compat": [4, 5, 9, 10, 11, 14, 31, 34, 42, 44, 46, 47, 48, 50, 75, 85, 87], "variant": [4, 5], "shuttl": [4, 5], "repositori": [4, 9, 11, 42, 44, 54], "v1": [4, 7, 9, 12, 21, 31, 58, 73, 80], "2": [4, 12, 13, 14, 15, 16, 18, 19, 22, 24, 26, 27, 29, 31, 36, 39, 41, 43, 51, 67], "bom": [4, 5, 7, 8, 31], "locat": [4, 5, 7, 8, 31, 49], "googl": [4, 5, 7, 8, 31, 50, 54], "sheet": [4, 5, 7, 8, 30, 31, 50], "adc": [4, 5, 16, 24, 26, 27, 31, 63, 73, 74], "input": [4, 5, 9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 46, 57, 58, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 86], "map": [4, 5, 13, 18, 31, 64, 78], "etc": [4, 5, 10, 18, 27, 31, 35, 36, 54, 73, 74, 75, 78, 82, 86], "neuralynx": [4, 5], "gold": [4, 5], "pin": [4, 5, 14, 19, 28, 31, 38, 39, 46], "usag": [4, 5, 21, 49, 85], "instruct": [4, 5, 10, 39, 51], "manual": [4, 5, 11, 19, 41, 48, 60, 83], "64": [5, 6, 9, 11, 12, 13, 15, 22, 25, 26, 30, 35, 36, 38, 44, 48, 50, 52, 54, 56, 60, 77], "larg": [5, 15, 38, 86], "rat": 5, "64l": [6, 7], "omnet": [6, 7, 31, 50], "adpat": [6, 7, 31], "nano": [6, 8, 50], "z": [6, 8, 46, 50], "eib": [7, 8, 31, 52], "imped": [7, 15, 26, 27, 36, 39], "tester": 7, "plate": 7, "chanbnel": 7, "intern": [7, 11, 15, 16, 27, 75, 86], "adapt": [8, 39, 52], "silicon": [8, 31, 39, 50, 52], "face": [9, 43], "access": [9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 50, 75, 82, 83], "auxiliari": [9, 10, 26, 44, 77, 83], "io": [9, 10, 13, 14, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 43, 44, 46, 63, 66, 82, 84, 86], "bench": 9, "4x": [9, 46], "feed": 9, "3x": [9, 46], "passiv": [9, 10, 31, 36], "speed": [9, 10, 12, 36, 46, 50], "clock": [9, 10, 16, 18, 20, 21, 22, 23, 31, 36, 46, 47, 50, 65, 71, 75, 86], "12x": [9, 46], "esd": 9, "protect": [9, 19], "bnc": 9, "ribbon": [9, 10, 43], "direct": [9, 10, 14, 16, 24, 26, 27, 36, 46, 47, 63], "12": [9, 16, 18, 20, 24, 36, 39, 63, 73, 74, 85, 86], "output": [9, 10, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 29, 30, 31, 38, 46, 48, 50, 63, 64, 65, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "8": [9, 14, 16, 18, 19, 25, 30, 31, 43, 49, 66, 86], "5v": [9, 16, 31, 38], "harp": [9, 10, 18, 86], "bu": [9, 11, 14, 18, 36, 46], "lot": [9, 31, 57, 58, 61], "indic": [9, 10, 11, 16, 19, 24, 27, 29, 36, 39, 41, 48, 66, 73, 74, 78, 86], "led": [9, 11, 18, 25, 31, 37, 38, 43, 48, 50, 66, 70, 72], "6": [9, 10, 16, 18, 26, 31, 33, 39, 41, 51], "button": [9, 11, 18, 41, 50, 56, 66, 73, 74], "mark": [9, 10, 14, 38], "trigger": [9, 14, 15, 19, 21, 25, 27, 31, 36, 46, 67, 68, 75, 76, 78, 79], "rug": 9, "m6": 9, "20": [9, 11, 16, 39, 73, 74, 86], "both": [9, 11, 12, 25, 30, 31, 36, 39, 47, 48, 62, 75, 76], "metric": 9, "imperi": 9, "tabl": [9, 11, 15, 25, 27, 36, 47, 75, 78, 82, 83, 85, 86], "19": [9, 86], "rack": 9, "fulli": [9, 13], "sourc": [9, 10, 13, 14, 15, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 36, 39, 46, 48, 51, 52, 62, 63, 64, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "gatewar": [9, 31, 33, 34, 36, 46], "made": [9, 12, 15, 31, 37, 39, 52, 78], "fpga": [9, 10, 31, 33, 36, 46, 47], "toolchain": [9, 10], "yosi": [9, 10], "nextpnr": [9, 10], "alwai": [10, 16, 22, 38, 46, 68, 75], "neglect": 10, "signal": [10, 11, 16, 18, 20, 30, 36, 39, 50, 78, 79], "shrunk": 10, "delta": [10, 22, 27], "option": [10, 14, 17, 19, 31, 41, 47, 48, 50, 52, 63, 64, 65, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80], "caoxial": 10, "5mm": [10, 39, 43], "audio": [10, 12, 41, 83], "line": [10, 14, 18, 31, 36, 39, 46, 50, 52, 67, 76], "mai": [10, 15, 16, 19, 26, 36, 39, 46, 48, 52, 68, 75], "present": [10, 12, 15, 25, 36, 75, 86], "avail": [10, 15, 21, 24, 48, 52, 53, 67, 73, 74, 75, 76, 78, 83], "particular": [10, 36, 39, 46, 86], "two": [10, 12, 16, 18, 25, 31, 33, 36, 38, 39, 43, 46, 47, 73, 74, 75, 77], "four": [10, 18, 31], "futur": [10, 18, 31, 83], "though": [10, 83], "end": [10, 12, 22, 36, 39, 46, 47], "symmetr": 10, "purpos": [10, 36, 46], "either": [10, 28, 37, 38, 39, 40, 50, 63, 67, 76], "soon": [10, 42], "some": [10, 16, 19, 26, 36, 38, 39, 48, 53, 67, 68, 75, 76, 82, 86], "bug": [10, 54], "sequenc": [10, 15, 24, 27, 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17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 73, 74], "statu": [10, 13, 17, 18, 19, 23, 24, 36, 41, 57, 68, 75, 78], "loss": [10, 36, 39, 46], "lock": [10, 14, 18, 19], "re": [10, 31, 35, 36, 73, 74], "establish": 10, "restart": [10, 47, 48, 86], "log": [10, 57], "sent": [10, 16, 18, 22, 36, 39, 79], "press": [10, 18, 39, 50, 56, 86], "send": [10, 11, 15, 16, 18, 36, 56, 82], "per": [10, 14, 16, 25, 31, 70, 72, 75, 76, 78], "hold": [10, 12, 39, 78], "result": [10, 22, 24, 31, 36, 39, 48, 63, 73, 74, 77, 78], "repeat": [10, 39, 49], "keyboard": 10, "bit": [10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 26, 27, 29, 36, 39, 47, 48, 63, 66, 73, 74, 77, 78, 86], "word": [10, 14, 18, 22, 23, 24, 27, 29, 36], "exampl": [10, 14, 16, 36, 48, 55, 56, 57, 58, 59, 61, 67, 73, 74, 75, 76, 78, 85, 86], "000001": 10, "integ": [10, 16, 22, 24, 26, 63, 66, 73, 74, 77, 78], "100001": 10, "33": [10, 16], "111111": 10, "63": 10, "toggl": [10, 15, 31, 86], "sensit": [10, 38], "first": [10, 14, 16, 29, 39, 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86], "9": [13, 14, 16, 19, 22, 27, 30, 31, 33, 34, 38, 57, 58], "axi": [13, 31, 33, 34, 57, 58, 64], "acceler": 13, "At": [13, 30, 48, 82], "core": [13, 30, 48, 61, 82], "correspond": [13, 16, 27, 70, 72, 78], "chip": [13, 16, 26, 27, 28, 31, 36, 57, 64, 73, 74, 78, 79], "implement": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 35, 36, 46, 52], "hard": [13, 15, 26, 46, 64, 84], "code": [13, 15, 16, 24, 26, 30, 36, 46, 57, 58, 64, 85], "100": [13, 15, 16, 31, 36, 46, 64, 66, 70, 72, 86], "hz": [13, 27, 29, 31, 64, 65, 69, 86], "updat": [13, 16, 27, 36, 41, 53, 64], "rate": [13, 19, 20, 22, 23, 26, 27, 29, 31, 64, 69, 75, 86], "sensor": [13, 26, 30, 35, 36, 50, 57, 58, 64, 70, 72, 80, 82], "fusion": [13, 64], "ndof": [13, 64], "mode": [13, 14, 18, 24, 31, 49, 58, 64, 70, 71, 72, 74, 75], "hardcod": [13, 64], "name": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 46, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 86], "effect": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 63], "por": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30], "0x00": [13, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 85, 86], "enabl": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 36, 47, 58, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 80], "r": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "w": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "none": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 64, 65, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "lsb": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 77], "disabl": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 47, 65, 67, 76], "stream": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 36, 57, 58, 61, 63, 64, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80, 83, 84, 85, 86], "0x0": 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86], "24": [14, 24, 39, 86], "serd": [14, 19, 36, 68], "pair": [14, 16, 36, 46], "ds90ub9x3": 14, "physic": [14, 46, 75, 78, 86], "seriz": 14, "third": [14, 55, 60], "parti": [14, 55, 60, 75], "deriv": [14, 36, 46], "offset": [14, 15, 24, 26, 27, 33, 63, 77, 78], "0x8000": [14, 24, 26], "0x8001": 14, "readsz": 14, "1280": 14, "size": [14, 22, 27, 29, 39, 75, 78, 85, 86], "15": [14, 15, 16, 18, 39, 86], "parallel": [14, 31, 36, 39], "sampl": [14, 16, 18, 20, 22, 23, 24, 26, 27, 31, 63, 66, 70, 72, 73, 74, 75, 77, 78, 83], "total": [14, 23], "num": 14, "31": [14, 19, 27, 86], "aggreg": 14, "perform": [14, 30, 36, 46, 50, 59, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 83, 85, 86, 87], "0x8002": 14, "determin": [14, 18, 25, 27, 28, 39, 40, 50, 63, 65, 72, 73, 74, 77, 78, 86], "captur": 14, "tigger": 14, "continu": [14, 15, 23, 25], "hsync": [14, 36], "vsync": [14, 36], "edg": [14, 17, 39], "low": [14, 15, 17, 18, 19, 27, 31, 36, 38, 46, 65, 77, 78, 84, 85], 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38, 41, 46, 49, 86], "1bit": 14, "0xf": 14, "16bit": 14, "00": [14, 18, 85, 86], "01": [14, 18, 85, 86], "10": [14, 15, 16, 18, 19, 24, 25, 27, 29, 48, 52, 85, 86], "11": [14, 16, 18, 19, 24, 51, 86], "msb": [14, 18], "0x800b": 14, "datalines0": 14, "0xb": 14, "0xc": 14, "0xd": 14, "0xe": 14, "0x800c": 14, "datalines1": 14, "0x8010": 14, "gpio_dir": 14, "gpio": [14, 18, 28, 79], "0b0": [14, 16, 17, 19], "0b1": [14, 16, 17, 19], "0x8011": 14, "gpio_val": 14, "0x8012": 14, "ds90ubx": 14, "n": [14, 15, 17, 20, 22, 23, 25, 27, 28, 29, 31, 63, 73, 74, 86], "i2c": [14, 36], "less": [14, 31, 39, 63, 73, 74, 77, 78, 86], "jie": [15, 25, 26, 85, 86], "zhang": [15, 25, 26, 85, 86], "combin": [15, 36, 46, 60, 61, 73, 74, 75, 78, 79], "bipolar": 15, "stimuli": [15, 27, 67, 76, 78], "circuit": [15, 18, 25, 27, 31, 36, 38, 86], "enhanc": 15, "howland": [15, 31], "pump": [15, 31], "driven": [15, 83], "dac": [15, 16, 26, 27, 63], "volt": [15, 18, 19, 27, 31, 33, 34, 38, 63, 77, 78], "regul": [15, 38], 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[[22, "load-test-device"]], "Memory Usage Monitor": [[23, "memory-usage-monitor"]], "Neuropixels V1": [[24, "neuropixels-v1"]], "HS64 Optical Stimulator": [[25, "hs64-optical-stimulator"]], "HS64 Optical Stimulator Registers": [[25, "ostim-hs64-regs"]], "RHD2164": [[26, "rhd2164"]], "RHS2116": [[27, "rhs2116"]], "RHS2116 Trigger": [[28, "rhs2116-trigger"]], "Test0 Device": [[29, "test0-device"]], "TS4231 Array for Vive V1 Base Stations": [[30, "ts4231-array-for-vive-v1-base-stations"]], "Headstage-64": [[31, "headstage-64"]], "Data Link Serializaiton": [[31, "data-link-serializaiton"]], "Electrophysiology & Auxiliary Analog Inputs": [[31, "electrophysiology-auxiliary-analog-inputs"]], "3D Position Tracking": [[31, "d-position-tracking"]], "3D Orientation Tracking": [[31, "d-orientation-tracking"]], "Neural Stimulation": [[31, "neural-stimulation"]], "Optical Stimulation": [[31, "optical-stimulation"]], "Electical Stimulation": [[31, "electical-stimulation"]], "Test Board for 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headstage_64 with a silicon probe instead of tetrodes?": [[52, "term-Can-I-use-headstage_64-with-a-silicon-probe-instead-of-tetrodes"]], "can i use my older intan headstages with the system?": [[52, "term-Can-I-use-my-older-Intan-headstages-with-the-system"]], "how is oni different than onix?": [[52, "term-How-is-ONI-different-than-ONIX"]], "i have existing acquisition hardware. can i can use your api and software to acquire data from it?": [[52, "term-I-have-existing-acquisition-hardware.-Can-I-can-use-your-API-and-software-to-acquire-data-from-it"]], "i have existing acquisition software. can i integrate support for onix hardware using your api?": [[52, "term-I-have-existing-acquisition-software.-Can-I-integrate-support-for-ONIX-hardware-using-your-API"]], "is onix hardware available for purchase?": [[52, "term-Is-ONIX-hardware-available-for-purchase"]], "what does onix stand for?": [[52, "term-What-does-ONIX-stand-for"]], "what is onix?": [[52, "term-What-is-ONIX"]], "what is open ephys?": [[52, "term-What-is-Open-Ephys"]], "where do i get help when using the system?": [[52, "term-Where-do-I-get-help-when-using-the-system"]], "why is there no open ephys gui plugin for onix hardware?": [[52, "term-Why-is-there-no-Open-Ephys-GUI-plugin-for-ONIX-hardware"]]}})
\ No newline at end of file
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"complet": [2, 10, 18, 24, 31, 36, 39, 48, 49, 73, 74, 75], "carefulli": [2, 38], "understand": [2, 61, 75], "refer": [2, 10, 61], "back": [2, 14, 22, 31, 36, 38, 39, 43, 46, 63], "disconnect": [2, 10, 12], "while": [2, 3, 11, 39, 56], "pc": [2, 3, 10, 23, 46, 48], "fmchost": 2, "detail": [2, 10, 15, 26, 27, 31, 33, 34, 36, 52, 61, 84, 87], "must": [2, 3, 10, 16, 30, 31, 36, 38, 46, 48, 63, 70, 71, 72, 73, 74, 75, 78], "correctli": [2, 15, 58, 73, 74], "oper": [2, 10, 11, 13, 14, 15, 19, 24, 27, 31, 33, 34, 36, 48, 61, 64, 73, 74, 82, 86], "The": [2, 3, 4, 5, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 36, 37, 38, 39, 43, 46, 48, 49, 50, 52, 57, 58, 63, 66, 67, 68, 72, 73, 74, 75, 76, 77, 78, 79, 83, 84, 86], "one": [2, 3, 10, 18, 24, 30, 31, 36, 39, 41, 43, 49, 58, 63, 73, 74, 75, 77, 78, 80, 82, 83], "anoth": [2, 79, 83], "depend": [2, 13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 36, 38, 39, 46, 52, 64, 75, 86], "length": [2, 24, 36, 39, 43, 72], "ensur": [2, 24, 39, 48, 73, 74], "correct": [2, 27, 33, 73, 74], "accord": 2, "its": [2, 3, 11, 14, 15, 18, 31, 36, 38, 39, 46, 49, 50, 61, 62, 67, 69, 75, 79, 83, 84, 85, 87], "switch": [2, 9, 15, 16, 27, 46, 66], "port": [2, 9, 10, 14, 18, 19, 41, 47, 56, 57, 58, 66, 68, 70, 71, 72, 74, 75, 86], "current": [2, 15, 17, 18, 22, 25, 26, 27, 31, 39, 48, 49, 50, 52, 67, 73, 74, 75, 76, 78, 83, 86], "onix": [2, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 33, 34, 35, 36, 39, 40, 42, 44, 46, 50, 52, 53, 54, 55, 60, 62, 70, 71, 72, 73, 74, 75, 78, 84, 85, 86, 87], "librari": [2, 61, 62, 73, 74, 75, 78, 82, 83, 84], "being": [2, 23, 39, 75, 78, 83, 86], "revis": [2, 10, 31], "improv": [2, 31, 83, 86], "usabl": [2, 16], "manag": [2, 47, 48, 49, 61, 62, 75, 83], "via": [2, 11, 12, 15, 16, 19, 25, 28, 31, 36, 46, 50, 71], "onicontext": [2, 37, 58, 59, 70, 71, 72, 74, 81, 82], "node": [2, 37, 42, 56, 58, 61, 63, 68, 73, 74, 75, 78, 79, 80], "headstageportcontroldevic": [2, 81], "chang": [2, 10, 14, 18, 19, 22, 24, 27, 48, 66, 73, 74, 75, 78, 83, 86], "make": [2, 3, 10, 15, 31, 33, 34, 35, 36, 49, 52, 56, 58, 73, 74, 75, 78, 83, 85], "appli": [2, 15, 19, 27, 39, 63, 68, 73, 74, 78], "immedi": [2, 15, 16, 17, 18, 19, 25, 27, 28, 29, 54, 63], "persist": [2, 38], "even": [2, 35, 38, 43, 46, 68, 75, 83], "run": [2, 3, 17, 18, 48, 49, 56, 65, 68, 75, 86], "default": [2, 15, 17, 19, 20, 22, 23, 25, 38, 61, 68, 73, 74, 86], "4": [2, 3, 9, 14, 15, 16, 18, 19, 22, 24, 26, 27, 31, 33, 38, 39, 41, 43, 46, 49, 78, 86], "9v": 2, "onli": [2, 3, 12, 15, 17, 18, 24, 27, 28, 29, 31, 36, 38, 39, 49, 52, 58, 66, 72, 75, 78, 83, 86], "cycl": [2, 17, 22, 27, 31, 36, 48, 65], "reboot": [2, 48, 49], "keep": [2, 3, 19, 20, 48, 67, 73, 74], "until": [2, 27, 38, 43, 48, 65, 75], "rememb": [2, 58], "set": [2, 3, 10, 14, 16, 17, 18, 19, 22, 24, 25, 27, 28, 31, 36, 39, 41, 48, 62, 63, 65, 66, 67, 70, 71, 72, 73, 74, 76, 77, 78, 79, 86], "desir": [2, 18, 31, 78], "valu": [2, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 36, 38, 39, 47, 63, 67, 73, 74, 75, 76, 77, 78, 86], "after": [2, 10, 14, 19, 27, 28, 36, 38, 39, 47, 78], "provid": [2, 3, 4, 5, 9, 10, 11, 12, 13, 14, 15, 16, 19, 21, 22, 24, 25, 26, 27, 30, 31, 36, 39, 44, 46, 50, 51, 57, 59, 62, 64, 67, 68, 73, 74, 75, 76, 78, 79, 82, 83, 84, 85, 86], "dynam": [2, 86], "write": [2, 13, 14, 15, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 48, 75, 79, 85, 86], "paramet": [2, 15, 20, 22, 23, 25, 27, 31, 33, 34, 58, 59, 63, 67, 68, 73, 74, 75, 76, 77, 78], "save": [2, 19, 57, 58, 75], "when": [2, 11, 12, 14, 15, 17, 19, 22, 27, 37, 38, 39, 46, 49, 50, 51, 52, 57, 62, 63, 66, 67, 68, 73, 74, 75, 78, 83, 86], "On": [2, 13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 29, 30, 48, 50, 73, 74, 83], "load": [2, 11, 21, 25, 26, 47, 86], "wa": [2, 3, 36, 39, 74, 78, 85], "last": [2, 13, 49], "show": [2, 10, 37, 56, 57, 58, 61, 73, 74, 75, 78, 84], "therefor": [2, 14, 36, 38, 73, 74], "alreadi": [2, 47, 49], "linkvoltag": [2, 68], "field": [2, 14, 19, 22, 24, 47, 68, 71], "If": [2, 10, 14, 25, 28, 31, 34, 35, 38, 39, 47, 48, 49, 52, 61, 63, 65, 67, 68, 72, 73, 74, 75, 76, 83, 84, 86], "ani": [2, 3, 31, 36, 39, 46, 48, 50, 75, 78, 85], "thei": [2, 3, 10, 19, 26, 27, 31, 36, 39, 40, 50, 67, 75, 76, 78, 83], "properti": [2, 13, 14, 31, 33, 34, 38, 63, 64, 65, 66, 68, 69, 70, 72, 75, 77, 79, 80], "neuropixelsv1edevic": [2, 58, 81], "requir": [2, 10, 13, 18, 21, 24, 27, 28, 31, 36, 38, 39, 43, 48, 64, 65, 67, 73, 74, 75, 82], "1": [2, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 30, 31, 35, 36, 39, 41, 43, 44, 46, 54, 60, 63, 67, 73, 74, 76, 78, 85, 86], "0e": [2, 35, 54, 60, 74], "open": [2, 3, 4, 9, 10, 11, 27, 44, 46, 47, 48, 49, 52, 54, 58, 61, 62, 67, 73, 74, 75, 76, 78, 84, 85, 86, 87], "singl": [2, 3, 10, 11, 12, 13, 16, 18, 22, 24, 25, 30, 36, 39, 44, 46, 48, 49, 64, 68, 69, 70, 71, 72, 73, 74, 75, 78, 80, 85, 86], "order": [2, 3, 10, 14, 15, 16, 18, 19, 27, 30, 73, 74, 83, 86], "an": [2, 3, 7, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 36, 37, 39, 41, 47, 48, 50, 52, 54, 56, 61, 63, 66, 70, 72, 73, 74, 75, 78, 82, 83, 85, 86], "overrid": 2, "address": [2, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 47], "distinct": [2, 36], "becaus": [2, 3, 11, 31, 36, 39, 52, 62, 73, 74, 78], "directli": [2, 3, 12, 31, 37, 39, 50], "time": [2, 3, 11, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 36, 63, 73, 74, 75, 78, 83, 86], "compos": 3, "variou": [3, 7, 10, 20, 22, 27, 61, 82, 86], "piec": [3, 12, 39, 43, 75], "three": [3, 16, 33, 36, 39, 48, 82], "major": [3, 36, 39, 82, 83], "point": [3, 31, 38, 39, 63, 77, 78], "rule": 3, "outlin": 3, "structur": [3, 13, 19, 20, 22, 23, 29, 30], "transmit": [3, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 73, 74, 86], "between": [3, 11, 12, 15, 16, 25, 27, 36, 37, 39, 50, 67, 76], "part": [3, 18, 31, 43, 47, 73, 74, 78], "instanc": [3, 10, 18, 36, 50, 73, 74, 78], "intan": [3, 26, 27, 28, 31, 36, 52, 86], "classic": [3, 52], "ephi": [3, 4, 9, 10, 11, 26, 27, 31, 35, 44, 52, 54, 57, 77, 78, 84, 85, 86, 87], "serial": [3, 10, 14, 19, 31, 33, 34, 35, 46, 52, 73, 74], "peripher": [3, 36], "interfac": [3, 4, 5, 11, 36, 46, 47, 50, 52, 54, 73, 74, 75, 87], "spi": [3, 27, 36, 47, 52], "commun": [3, 12, 18, 20, 22, 35, 39, 44, 46, 48, 50, 52, 62, 75], "mani": [3, 27, 38, 50, 61, 75], "non": [3, 14, 18, 19, 36], "interchang": 3, "protocol": [3, 14, 18, 46], "why": [3, 52, 61, 75], "type": [3, 24, 31, 37, 48, 49, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80], "probe": [3, 8, 24, 31, 33, 34, 35, 38, 50, 52, 58, 83], "camera": [3, 10, 14, 35, 36, 60, 70, 72], "usual": [3, 36], "come": [3, 39, 42], "own": [3, 31, 35, 75], "neuro": [3, 52, 54, 75, 87], "design": [3, 4, 5, 9, 10, 11, 27, 31, 42, 44, 48, 52, 62, 73, 74, 75, 78, 82, 83], "unifi": [3, 36], "wide": [3, 15, 25, 27], "varieti": 3, "instrument": [3, 14], "By": [3, 68], "specifi": [3, 14, 15, 17, 18, 49, 64, 66, 68, 69, 71, 77, 78, 80, 86], "should": [3, 17, 18, 19, 23, 26, 27, 37, 38, 39, 47, 48, 49, 73, 74, 78, 86], "organis": 3, "remain": [3, 10, 15, 23, 65], "agnost": [3, 84], "extracellular": [3, 54, 57, 58], "mean": [3, 10, 14, 19, 36], "same": [3, 18, 23, 39, 50, 75, 79], "softwar": [3, 9, 11, 24, 35, 46, 51, 52, 55, 60, 71, 83, 86, 87], "now": [3, 37, 47, 48, 49, 73, 74], "rang": [3, 15, 16, 19, 25, 31, 36, 61], "so": [3, 10, 12, 15, 25, 31, 36, 38, 39, 47, 49, 51, 52, 58], "lab": [3, 42, 44, 47], "do": [3, 10, 12, 14, 18, 28, 31, 36, 47, 49, 52, 54, 67, 73, 74, 75, 76, 79], "spend": 3, "monei": 3, "purchas": [3, 52, 54], "separ": [3, 31, 39], "extra": 3, "tool": [3, 39, 43, 47, 48, 60, 62, 87], "wish": [3, 67, 76], "add": [3, 47], "experi": [3, 10, 50, 87], "addition": [3, 9, 78], "those": [3, 19, 83], "new": [3, 16, 48, 75, 87], "studi": 3, "brain": [3, 44], "backend": 3, "infrastructur": 3, "reus": 3, "control": [3, 9, 10, 11, 14, 18, 21, 25, 26, 27, 29, 31, 36, 39, 46, 56, 57, 65, 68, 70, 71, 72, 75, 79, 85, 86], "almost": 3, "recod": 3, "There": [3, 10, 22, 27, 31, 53, 74, 75, 82, 83], "grow": 3, "appreci": 3, "examin": [3, 73, 74, 85, 86], "natur": [3, 83], "behaviour": 3, "anim": [3, 4, 5, 11, 31, 50, 87], "often": [3, 12, 19], "larger": [3, 39, 63, 73, 74, 75, 77, 78], "intric": 3, "perhap": 3, "experiment": [3, 9, 10, 52, 75], "It": [3, 4, 12, 16, 17, 19, 20, 31, 38, 39, 46, 48, 50, 61, 62, 75, 78, 84, 87], "impair": 3, "littl": 3, "possibl": [3, 12, 18, 31, 46, 67, 82], "achiev": [3, 31], "cours": [3, 54, 61], "import": [3, 31, 36, 39], "reduc": [3, 15, 36, 50, 67, 72], "weight": 3, "overlook": 3, "As": [3, 18, 36, 48, 86], "explor": [3, 87], "arena": [3, 31], "centr": 3, "mass": 3, "rare": 3, "abov": [3, 22, 31, 34, 39, 40, 46, 50], "instead": [3, 12, 31, 52], "side": [3, 36, 75], "introduc": 3, "rotat": [3, 39, 50], "forc": 3, "compens": [3, 36, 39, 68], "torqu": [3, 11], "head": [3, 35, 36, 42], "up": [3, 11, 15, 18, 25, 31, 36, 39, 47, 56, 68], "straight": 3, "allow": [3, 7, 9, 10, 12, 18, 31, 36, 38, 39, 40, 43, 44, 50, 52, 63, 70, 71, 72, 75, 77, 78], "over": [3, 15, 18, 25, 31, 36, 38, 39, 40, 41, 43, 46, 47, 50, 57, 63, 70, 71, 72, 75, 85], "wire": [3, 4, 5, 9, 10, 15, 31, 36, 39, 43], "lighter": 3, "thinner": [3, 39], "compar": [3, 35, 73, 74, 85], "diamet": [3, 36, 39], "extrem": [3, 36], "flexibl": [3, 36, 39], "abl": [3, 31, 39, 47], "doe": [3, 10, 11, 13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 38, 48, 52, 57, 61], "becom": [3, 17, 28, 38], "twist": [3, 11, 50, 56], "maintain": [3, 11], "electr": [3, 4, 5, 11, 21, 31, 39, 67, 76], "rest": [3, 15, 67], "path": [3, 36, 47, 49, 86], "move": [3, 11, 18, 31, 39, 42, 50, 56, 78, 87], "through": [3, 9, 15, 24, 37, 50, 63, 67, 73, 74, 76, 78], "receiv": [3, 14, 16, 18, 19, 22, 28, 30, 31, 39, 57, 79, 83], "inform": [3, 10, 13, 19, 21, 23, 30, 35, 39, 52, 54, 57, 58, 61, 63, 68, 71, 73, 74, 75, 78, 83, 84, 85, 86], "drive": [3, 4, 5, 10, 17, 36, 50], "motor": [3, 11], "activ": [3, 10, 11, 12, 16, 17, 19, 36, 39, 49, 50, 73, 74, 78], "In": [3, 14, 16, 18, 36, 46, 47, 79, 83], "close": [3, 22, 44, 46, 48, 50, 59, 60, 68], "loop": [3, 22, 24, 44, 46, 48, 50, 59, 60, 63, 68, 85], "process": [3, 39, 48, 49, 61, 73, 74, 83], "act": [3, 79], "upon": 3, "optogenet": [3, 25], "stimul": [3, 4, 5, 21, 27, 28, 35, 50, 57, 67, 68, 76, 78, 86], "area": [3, 39, 78], "everi": [3, 27, 30, 36, 47, 75, 82], "certain": 3, "event": [3, 9, 10, 46, 68, 83], "detect": [3, 14, 19, 24, 30, 38, 40, 50], "describ": [3, 18, 31, 33, 34, 36, 39, 58, 61, 86], "much": [3, 31], "pass": [3, 14, 19, 27, 30, 75], "initi": [3, 18, 51, 85, 86], "respons": [3, 22, 60, 73, 74, 75, 78], "primarili": [3, 83], "spent": 3, "challeng": [3, 39], "number": [3, 7, 10, 14, 15, 17, 22, 23, 25, 27, 29, 31, 36, 46, 53, 63, 67, 73, 74, 75, 76, 77, 78, 86], "channel": [3, 4, 5, 6, 11, 15, 16, 19, 20, 24, 25, 26, 27, 31, 36, 41, 50, 54, 57, 58, 63, 73, 74, 75, 76, 77, 78, 85], "increas": [3, 18, 27, 31, 38, 39, 46, 50, 67, 68, 75, 86], "short": [3, 15, 39], "user": [3, 9, 10, 18, 19, 22, 48, 50, 61, 73, 74, 75, 78, 86], "respond": [3, 50, 67, 76], "timescal": 3, "biolog": 3, "within": [3, 15, 17, 19, 25, 36, 65, 75, 77, 78], "integr": [3, 4, 35, 52, 77, 78], "neuron": 3, "reli": 3, "slower": 3, "transfer": [3, 86], "characterist": [3, 36, 39], "typic": [3, 19, 27, 36, 39, 46, 56, 80], "would": [3, 10], "sever": [3, 36, 39, 50, 75], "ten": 3, "millisecond": [3, 44], "consider": 3, "durat": [3, 15, 25, 67, 76], "notabl": 3, "longer": [3, 39], "averag": 3, "action": [3, 9, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 67, 73, 74, 76], "potenti": [3, 31, 36, 75, 83], "around": [3, 64, 66, 68, 69, 73, 74, 78, 80], "m": [3, 13, 57], "ha": [3, 9, 10, 13, 17, 19, 28, 31, 33, 34, 38, 39, 43, 46, 48, 49, 61, 71, 73, 74, 75, 83], "shorter": [3, 39], "150": [3, 36], "microsecond": [3, 15, 25, 78], "slot": [3, 43, 47, 48, 50, 75, 82, 86], "quickli": [3, 47, 63, 75, 85], "freed": 3, "itself": [3, 12, 16, 27, 36, 37, 38, 39, 50], "overhead": [3, 63, 73, 74, 77, 78], "complex": [3, 31, 78], "analysi": [3, 73, 74], "extract": [3, 48], "phenomenon": 3, "interest": [3, 35], "electrod": [4, 5, 15, 31, 35, 58, 73, 74], "support": [4, 47, 52, 78, 85, 86], "optic": [4, 5, 9, 11, 21, 30, 67, 76], "small": [4, 10, 31, 39, 43, 49], "e": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "g": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "mous": [4, 67, 73, 74, 76, 78], "electrophysiologi": [4, 5, 57, 58, 83], "compat": [4, 5, 9, 10, 11, 14, 31, 34, 42, 44, 46, 47, 48, 50, 75, 85, 87], "variant": [4, 5], "shuttl": [4, 5], "repositori": [4, 9, 11, 42, 44, 54], "v1": [4, 7, 9, 12, 21, 31, 58, 73, 80], "2": [4, 12, 13, 14, 15, 16, 18, 19, 22, 24, 26, 27, 29, 31, 36, 39, 41, 43, 51, 67], "bom": [4, 5, 7, 8, 31], "locat": [4, 5, 7, 8, 31, 49], "googl": [4, 5, 7, 8, 31, 50, 54], "sheet": [4, 5, 7, 8, 30, 31, 50], "adc": [4, 5, 16, 24, 26, 27, 31, 63, 73, 74], "input": [4, 5, 9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 46, 57, 58, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 86], "map": [4, 5, 13, 18, 31, 64, 78], "etc": [4, 5, 10, 18, 27, 31, 35, 36, 54, 73, 74, 75, 78, 82, 86], "neuralynx": [4, 5], "gold": [4, 5], "pin": [4, 5, 14, 19, 28, 31, 38, 39, 46], "usag": [4, 5, 21, 49, 85], "instruct": [4, 5, 10, 39, 51], "manual": [4, 5, 11, 19, 41, 48, 60, 83], "64": [5, 6, 9, 11, 12, 13, 15, 22, 25, 26, 30, 35, 36, 38, 44, 48, 50, 52, 54, 56, 60, 77], "larg": [5, 15, 38, 86], "rat": 5, "64l": [6, 7], "omnet": [6, 7, 31, 50], "adpat": [6, 7, 31], "nano": [6, 8, 50], "z": [6, 8, 46, 50], "eib": [7, 8, 31, 52], "imped": [7, 15, 26, 27, 36, 39], "tester": 7, "plate": 7, "chanbnel": 7, "intern": [7, 11, 15, 16, 27, 75, 86], "adapt": [8, 39, 52], "silicon": [8, 31, 39, 50, 52], "face": [9, 43], "access": [9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 50, 75, 82, 83], "auxiliari": [9, 10, 26, 44, 77, 83], "io": [9, 10, 13, 14, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 43, 44, 46, 63, 66, 82, 84, 86], "bench": 9, "4x": [9, 46], "feed": 9, "3x": [9, 46], "passiv": [9, 10, 31, 36], "speed": [9, 10, 12, 36, 46, 50], "clock": [9, 10, 16, 18, 20, 21, 22, 23, 31, 36, 46, 47, 50, 65, 71, 75, 86], "12x": [9, 46], "esd": 9, "protect": [9, 19], "bnc": 9, "ribbon": [9, 10, 43], "direct": [9, 10, 14, 16, 24, 26, 27, 36, 46, 47, 63], "12": [9, 16, 18, 20, 24, 36, 39, 63, 73, 74, 85, 86], "output": [9, 10, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 29, 30, 31, 38, 46, 48, 50, 63, 64, 65, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "8": [9, 14, 16, 18, 19, 25, 30, 31, 43, 49, 66, 86], "5v": [9, 16, 31, 38], "harp": [9, 10, 18, 86], "bu": [9, 11, 14, 18, 36, 46], "lot": [9, 31, 57, 58, 61], "indic": [9, 10, 11, 16, 19, 24, 27, 29, 36, 39, 41, 48, 66, 73, 74, 78, 86], "led": [9, 11, 18, 25, 31, 37, 38, 43, 48, 50, 66, 70, 72], "6": [9, 10, 16, 18, 26, 31, 33, 39, 41, 51], "button": [9, 11, 18, 41, 50, 56, 66, 73, 74], "mark": [9, 10, 14, 38], "trigger": [9, 14, 15, 19, 21, 25, 27, 31, 36, 46, 67, 68, 75, 76, 78, 79], "rug": 9, "m6": 9, "20": [9, 11, 16, 39, 73, 74, 86], "both": [9, 11, 12, 25, 30, 31, 36, 39, 47, 48, 62, 75, 76], "metric": 9, "imperi": 9, "tabl": [9, 11, 15, 25, 27, 36, 47, 75, 78, 82, 83, 85, 86], "19": [9, 86], "rack": 9, "fulli": [9, 13], "sourc": [9, 10, 13, 14, 15, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 36, 39, 46, 48, 51, 52, 62, 63, 64, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "gatewar": [9, 31, 33, 34, 36, 46], "made": [9, 12, 15, 31, 37, 39, 52, 78], "fpga": [9, 10, 31, 33, 36, 46, 47], "toolchain": [9, 10], "yosi": [9, 10], "nextpnr": [9, 10], "alwai": [10, 16, 22, 38, 46, 68, 75], "neglect": 10, "signal": [10, 11, 16, 18, 20, 30, 36, 39, 50, 78, 79], "shrunk": 10, "delta": [10, 22, 27], "option": [10, 14, 17, 19, 31, 41, 47, 48, 50, 52, 63, 64, 65, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80], "caoxial": 10, "5mm": [10, 39, 43], "audio": [10, 12, 41, 83], "line": [10, 14, 18, 31, 36, 39, 46, 50, 52, 67, 76], "mai": [10, 15, 16, 19, 26, 36, 39, 46, 48, 52, 68, 75], "present": [10, 12, 15, 25, 36, 75, 86], "avail": [10, 15, 21, 24, 48, 52, 53, 67, 73, 74, 75, 76, 78, 83], "particular": [10, 36, 39, 46, 86], "two": [10, 12, 16, 18, 25, 31, 33, 36, 38, 39, 43, 46, 47, 73, 74, 75, 77], "four": [10, 18, 31], "futur": [10, 18, 31, 83], "though": [10, 83], "end": [10, 12, 22, 36, 39, 46, 47], "symmetr": 10, "purpos": [10, 36, 46], "either": [10, 28, 37, 38, 39, 40, 50, 63, 67, 76], "soon": [10, 42], "some": [10, 16, 19, 26, 36, 38, 39, 48, 53, 67, 68, 75, 76, 82, 86], "bug": [10, 54], "sequenc": [10, 15, 24, 27, 28, 35, 36, 78], "been": [10, 15, 75], "fix": [10, 24, 27, 29, 31, 51], "later": [10, 39], "rgb": [10, 43, 48], "insert": 10, "thin": [10, 36, 38, 39, 50, 68], "screw": [10, 39], "driver": [10, 11, 25, 31, 52, 53, 72, 75, 86], "just": [10, 31, 35, 36, 39, 50, 73, 74, 78, 83], "below": [10, 15, 27, 36, 38, 41, 43], "onboard": [10, 31, 36, 57, 71], "letter": 10, "c": [10, 13, 39, 46, 52, 78, 84], "d": [10, 86], "match": [10, 49, 73, 74, 75], "addit": [10, 35, 37, 50, 82], "50": [10, 17, 30, 36, 39, 46], "ohm": [10, 17, 36, 39, 46], "transmiss": [10, 19, 24, 36, 46], "matter": [10, 39], "connector": [10, 12, 31, 39, 46, 47, 50], "remov": [10, 12, 26, 33, 39, 77, 78], "improperli": 10, "state": [10, 14, 17, 18, 19, 25, 27, 36, 48, 65, 66, 68, 73, 74, 85, 86], "diagram": [10, 15, 16, 25, 36, 78], "definit": [10, 15, 19, 24, 25, 27, 61, 67, 76, 78, 86], "color": [10, 16, 18, 48, 73, 74], "legend": 10, "half": 10, "fill": 10, "circl": 10, "flash": [10, 30, 36, 47], "error": [10, 13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 73, 74], "statu": [10, 13, 17, 18, 19, 23, 24, 36, 41, 57, 68, 75, 78], "loss": [10, 36, 39, 46], "lock": [10, 14, 18, 19], "re": [10, 31, 35, 36, 73, 74], "establish": 10, "restart": [10, 47, 48, 86], "log": [10, 57], "sent": [10, 16, 18, 22, 36, 39, 79], "press": [10, 18, 39, 50, 56, 86], "send": [10, 11, 15, 16, 18, 36, 56, 82], "per": [10, 14, 16, 25, 31, 70, 72, 75, 76, 78], "hold": [10, 12, 39, 78], "result": [10, 22, 24, 31, 36, 39, 48, 63, 73, 74, 77, 78], "repeat": [10, 39, 49], "keyboard": 10, "bit": [10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 26, 27, 29, 36, 39, 47, 48, 63, 66, 73, 74, 77, 78, 86], "word": [10, 14, 18, 22, 23, 24, 27, 29, 36], "exampl": [10, 14, 16, 36, 48, 55, 56, 57, 58, 59, 61, 67, 73, 74, 75, 76, 78, 85, 86], "000001": 10, "integ": [10, 16, 22, 24, 26, 63, 66, 73, 74, 77, 78], "100001": 10, "33": [10, 16], "111111": 10, "63": 10, "toggl": [10, 15, 31, 86], "sensit": [10, 38], "first": [10, 14, 16, 29, 39, 47, 50, 62, 70, 71, 72, 73, 74, 83], "illumin": 10, "tinyfpga": 10, "bx": 10, "lattic": 10, "ice40": 10, "deseri": [10, 19, 36, 46, 75], "interpret": [10, 36, 78], "impel": 10, "team": [10, 52], "firmwar": [10, 15, 31, 34, 36, 41, 47, 85], "file": [10, 43, 47, 48, 49, 51, 73, 74, 75, 86], "label": [10, 27, 37], "config": [10, 18, 25], "zero": [11, 14, 73, 74, 78], "freeli": [11, 42, 50, 87], "veri": [11, 15, 17, 36, 38, 43, 50, 68, 84], "brief": 11, "extens": 11, "walkthrough": 11, "pleas": [11, 35, 51, 73, 74, 84], "inerti": [11, 13, 31, 71], "unit": [11, 13, 27, 30, 31, 33, 34, 67, 71, 76, 78], "imu": [11, 13, 31, 33, 34, 57, 58], "orient": [11, 12, 13, 33, 34, 43, 50, 57, 58, 64], "real": [11, 22, 23, 27, 31, 33, 34, 78, 83, 86], "known": 11, "command": [11, 15, 17, 18, 31, 36, 48, 49, 56], "qualiti": [11, 36, 39], "radio": [11, 39], "frequenc": [11, 17, 20, 22, 23, 31, 33, 36, 39, 65, 77, 78, 86], "rotari": [11, 50], "joint": [11, 39, 43, 50], "insid": [11, 39, 43], "lead": [11, 39, 43], "bandwidth": [11, 22, 26, 27, 36, 75, 86], "18": [11, 18, 86], "ghz": [11, 36, 39], "80": [11, 12, 39], "rail": [11, 31], "mountabl": 11, "remot": [11, 28], "json": [11, 56, 73, 74], "encod": [11, 30, 36, 63], "capacit": 11, "sens": [11, 78], "advanc": [11, 52, 61, 83], "stepper": 11, "tmc2130": 11, "silent": 11, "precis": [11, 15, 16, 31, 39, 50], "motion": 11, "interpol": 11, "256": [11, 86], "ustep": 11, "super": [11, 24], "capacitor": 11, "circuitri": [11, 15, 67], "fast": [12, 17, 23, 26, 27], "form": [12, 19, 46, 47, 73, 74, 75, 86], "hub": [12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 29, 30, 31, 49, 85, 86], "ucla": [12, 14, 36, 50, 70, 71, 72, 75], "altern": [12, 31, 39, 82], "hiros": [12, 39], "x": [12, 14, 18, 27, 39, 52, 86], "fl": [12, 39], "pr": [12, 39], "smt1": [12, 39], "socket": [12, 39, 43, 83], "synchronis": [12, 41, 50], "basest": [12, 31, 41], "x2": 12, "sync": [12, 14, 24, 28, 41], "vive": [12, 21, 31, 33, 41, 80], "adaptor": [12, 41], "easili": 12, "break": 12, "incorrectli": 12, "pull": [12, 39], "view": [12, 48, 78], "we": [12, 31, 35, 36, 39, 46, 48, 51, 52, 83, 84], "red": [12, 47, 78], "tube": [12, 39, 43], "grip": 12, "sleev": 12, "secur": 12, "anchor": 12, "tab": [12, 31, 37, 38, 73, 74, 78], "strain": [12, 39], "relief": [12, 39], "sinc": [12, 16, 67, 71, 76, 85, 86], "snug": 12, "fit": [12, 46, 78], "don": [12, 18, 48, 78], "t": [12, 18, 36, 48, 78, 86], "recommend": [12, 39, 48, 62, 82], "replac": [12, 39, 73, 74], "author": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30], "jonathan": [13, 15, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 28, 29, 30], "p": [13, 15, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 28, 29, 30, 86], "newman": [13, 15, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 28, 29, 30, 85, 86], "version": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 46, 49, 50, 51, 85, 86], "id": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 43, 85, 86], "9": [13, 14, 16, 19, 22, 27, 30, 31, 33, 34, 38, 57, 58], "axi": [13, 31, 33, 34, 57, 58, 64], "acceler": 13, "At": [13, 30, 48, 82], "core": [13, 30, 48, 61, 82], "correspond": [13, 16, 27, 70, 72, 78], "chip": [13, 16, 26, 27, 28, 31, 36, 57, 64, 73, 74, 78, 79], "implement": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 35, 36, 46, 52], "hard": [13, 15, 26, 46, 64, 84], "code": [13, 15, 16, 24, 26, 30, 36, 46, 57, 58, 64, 85], "100": [13, 15, 16, 31, 36, 46, 64, 66, 70, 72, 86], "hz": [13, 27, 29, 31, 64, 65, 69, 86], "updat": [13, 16, 27, 36, 41, 53, 64], "rate": [13, 19, 20, 22, 23, 26, 27, 29, 31, 64, 69, 75, 86], "sensor": [13, 26, 30, 35, 36, 50, 57, 58, 64, 70, 72, 80, 82], "fusion": [13, 64], "ndof": [13, 64], "mode": [13, 14, 18, 24, 31, 49, 58, 64, 70, 71, 72, 74, 75], "hardcod": [13, 64], "name": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 46, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 86], "effect": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 63], "por": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30], "0x00": [13, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 85, 86], "enabl": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 36, 47, 58, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 80], "r": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "w": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "none": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 64, 65, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "lsb": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 77], "disabl": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 47, 65, 67, 76], "stream": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 36, 57, 58, 61, 63, 64, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80, 83, 84, 85, 86], "0x0": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30], "0x1": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30], "sign": [13, 16, 48, 63, 77, 78], "except": [13, 71], "calibr": [13, 24, 31], "byte": [13, 24, 75, 86], "convers": [13, 27, 63, 77, 78], "euler": 13, "angl": 13, "tait": 13, "bryan": 13, "formal": 13, "yaw": 13, "360": 13, "degre": 13, "roll": 13, "180": 13, "pitch": 13, "90": 13, "circ": 13, "16": [13, 14, 16, 18, 22, 26, 27, 29, 31, 63, 77, 78, 86], "quaternion": 13, "14": [13, 14, 16, 27, 51, 63, 86], "graviti": 13, "vector": [13, 27], "": [13, 15, 18, 27, 28, 31, 36, 39, 48, 52, 61, 68, 71, 73, 74, 75, 77, 82, 83, 84, 86], "temperatur": [13, 26, 35, 38, 39], "accept": [13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 75, 86], "attempt": [13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 75], "fail": [13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31], "aar\u00f3n": [14, 23, 85, 86], "cueva": [14, 23, 85, 86], "l\u00f3pez": [14, 23, 85, 86], "24": [14, 24, 39, 86], "serd": [14, 19, 36, 68], "pair": [14, 16, 36, 46], "ds90ub9x3": 14, "physic": [14, 46, 75, 78, 86], "seriz": 14, "third": [14, 55, 60], "parti": [14, 55, 60, 75], "deriv": [14, 36, 46], "offset": [14, 15, 24, 26, 27, 33, 63, 77, 78], "0x8000": [14, 24, 26], "0x8001": 14, "readsz": 14, "1280": 14, "size": [14, 22, 27, 29, 39, 75, 78, 85, 86], "15": [14, 15, 16, 18, 39, 86], "parallel": [14, 31, 36, 39], "sampl": [14, 16, 18, 20, 22, 23, 24, 26, 27, 31, 63, 66, 70, 72, 73, 74, 75, 77, 78, 83], "total": [14, 23], "num": 14, "31": [14, 19, 27, 86], "aggreg": 14, "perform": [14, 30, 36, 46, 50, 59, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 83, 85, 86, 87], "0x8002": 14, "determin": [14, 18, 25, 27, 28, 39, 40, 50, 63, 65, 72, 73, 74, 77, 78, 86], "captur": 14, "tigger": 14, "continu": [14, 15, 23, 25], "hsync": [14, 36], "vsync": [14, 36], "edg": [14, 17, 39], "low": [14, 15, 17, 18, 19, 27, 31, 36, 38, 46, 65, 77, 78, 84, 85], "polar": [14, 27, 39], "invert": 14, "rise": [14, 17, 39], "fall": 14, "0x8003": 14, "triggeroff": 14, "skip": [14, 22], "0x8004": 14, "datag": 14, "gate": [14, 17, 65], "0x8005": 14, "syncbit": 14, "along": [14, 22, 27, 36, 39, 57, 58, 78, 86], "13": [14, 86], "0x8006": 14, "choosen": 14, "note": [14, 36, 43, 51, 78], "still": [14, 38, 39], "respect": [14, 28, 36, 56, 79], "multi": [14, 46], "row": [14, 47], "imag": [14, 35, 42, 46, 47, 49, 70, 72, 73, 74, 78], "select": [14, 16, 26, 27, 31, 36, 46, 47, 48, 49, 56, 58, 67, 73, 74, 75, 76, 77, 78], "0x8007": 14, "magic_mask": 14, "magic": [14, 27], "mask": 14, "bitmask": [14, 25], "invers": [14, 39], "30": [14, 27, 31, 86], "wait": [14, 39], "0x8008": 14, "0x8009": 14, "magic_wait": 14, "max": [14, 19, 25, 31, 33, 34, 76, 86], "cancel": 14, "go": [14, 48, 49], "indefinit": 14, "0x800a": 14, "datamod": 14, "normal": [14, 18, 24, 47, 49], "index": [14, 27, 30, 31, 36, 39, 42, 49, 86], "reserv": [14, 18, 27, 46, 86], "7": [14, 16, 26, 36, 38, 41, 46, 49, 86], "1bit": 14, "0xf": 14, "16bit": 14, "00": [14, 18, 85, 86], "01": [14, 18, 85, 86], "10": [14, 15, 16, 18, 19, 24, 25, 27, 29, 48, 52, 85, 86], "11": [14, 16, 18, 19, 24, 51, 86], "msb": [14, 18], "0x800b": 14, "datalines0": 14, "0xb": 14, "0xc": 14, "0xd": 14, "0xe": 14, "0x800c": 14, "datalines1": 14, "0x8010": 14, "gpio_dir": 14, "gpio": [14, 18, 28, 79], "0b0": [14, 16, 17, 19], "0b1": [14, 16, 17, 19], "0x8011": 14, "gpio_val": 14, "0x8012": 14, "ds90ubx": 14, "n": [14, 15, 17, 20, 22, 23, 25, 27, 28, 29, 31, 63, 73, 74, 86], "i2c": [14, 36], "less": [14, 31, 39, 63, 73, 74, 77, 78, 86], "jie": [15, 25, 26, 85, 86], "zhang": [15, 25, 26, 85, 86], "combin": [15, 36, 46, 60, 61, 73, 74, 75, 78, 79], "bipolar": 15, "stimuli": [15, 27, 67, 76, 78], "circuit": [15, 18, 25, 27, 31, 36, 38, 86], "enhanc": 15, "howland": [15, 31], "pump": [15, 31], "driven": [15, 83], "dac": [15, 16, 26, 27, 63], "volt": [15, 18, 19, 27, 31, 33, 34, 38, 63, 77, 78], "regul": [15, 38], 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"neuropixelsv1edevice"]], "ONIContext": [[75, "onicontext"]], "Purpose": [[75, "purpose"]], "Settings \u279e  Hubs\u2026": [[75, "settings-hubs"]], "Settings \u279e  Host Sync\u2026": [[75, "settings-host-sync"]], "OpticalStimulationDevice": [[76, "opticalstimulationdevice"]], "RHD2164Device": [[77, "rhd2164device"]], "RHS2116Device": [[78, "rhs2116device"]], "RHS2116TriggerDevice": [[79, "rhs2116triggerdevice"]], "TS4231V1Device": [[80, "ts4231v1device"]], "Nodes": [[81, "nodes"]], "Bonsai.ONIX": [[82, "bonsai-onix"]], "Using this Documentation": [[82, "using-this-documentation"]], "Open Ephys GUI": [[83, "open-ephys-gui"]], "Using the Open Ephys GUI for ONIX Data Visualization": [[83, "using-the-open-ephys-gui-for-onix-data-visualization"]], "software_logo Software Guide": [[84, "software-logo-software-guide"]], "oni-repl": [[85, "oni-repl"]], "Required Arguments": [[86, "required-arguments"]], "Command Line Options": [[86, "command-line-options"]], "REPL Commands": [[86, "repl-commands"]]}, "indexentries": {"can i use headstage_64 with a silicon probe instead of tetrodes?": [[52, "term-Can-I-use-headstage_64-with-a-silicon-probe-instead-of-tetrodes"]], "can i use my older intan headstages with the system?": [[52, "term-Can-I-use-my-older-Intan-headstages-with-the-system"]], "how is oni different than onix?": [[52, "term-How-is-ONI-different-than-ONIX"]], "i have existing acquisition hardware. can i can use your api and software to acquire data from it?": [[52, "term-I-have-existing-acquisition-hardware.-Can-I-can-use-your-API-and-software-to-acquire-data-from-it"]], "i have existing acquisition software. can i integrate support for onix hardware using your api?": [[52, "term-I-have-existing-acquisition-software.-Can-I-integrate-support-for-ONIX-hardware-using-your-API"]], "is onix hardware available for purchase?": [[52, "term-Is-ONIX-hardware-available-for-purchase"]], "what does onix stand for?": [[52, "term-What-does-ONIX-stand-for"]], "what is onix?": [[52, "term-What-is-ONIX"]], "what is open ephys?": [[52, "term-What-is-Open-Ephys"]], "where do i get help when using the system?": [[52, "term-Where-do-I-get-help-when-using-the-system"]], "why is there no open ephys gui plugin for onix hardware?": [[52, "term-Why-is-there-no-Open-Ephys-GUI-plugin-for-ONIX-hardware"]]}})
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