diff --git a/Software Guide/Bonsai.ONIX/Nodes/ONIContext.html b/Software Guide/Bonsai.ONIX/Nodes/ONIContext.html index fd012e0..42e8b2f 100644 --- a/Software Guide/Bonsai.ONIX/Nodes/ONIContext.html +++ b/Software Guide/Bonsai.ONIX/Nodes/ONIContext.html @@ -584,6 +584,10 @@

Configuration GUI +

Tip

+

Known issue: When the Passthrough radio button is selected for Hub B, no selector appears on either option making it seem nothing is selected, but the hub is actually in Passthrough mode.

+

Settings ➞ Host Sync…#

diff --git a/_sources/Software Guide/Bonsai.ONIX/Nodes/ONIContext.rst.txt b/_sources/Software Guide/Bonsai.ONIX/Nodes/ONIContext.rst.txt index 53e896a..407e515 100644 --- a/_sources/Software Guide/Bonsai.ONIX/Nodes/ONIContext.rst.txt +++ b/_sources/Software Guide/Bonsai.ONIX/Nodes/ONIContext.rst.txt @@ -112,6 +112,8 @@ ONIX-specific hub options such as access to raw deserializer data streams: :Passthrough: The hub port is configured to work with compatible 3rd-party devices, such as UCLA Miniscopes. +.. tip:: Known issue: When the Passthrough radio button is selected for Hub B, no selector appears on either option making it seem nothing is selected, but the hub is actually in Passthrough mode. + .. _bonsai_onicontext_syncsettings: Settings ➞ Host Sync... diff --git a/searchindex.js b/searchindex.js index e1eceaf..08f603f 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["Getting Started/index", "Getting Started/troubleshooting", "Getting 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6, 11, 15, 16, 19, 20, 24, 25, 26, 27, 31, 36, 41, 50, 54, 57, 58, 63, 73, 74, 75, 76, 77, 78, 85], "increas": [3, 18, 27, 31, 38, 39, 46, 50, 67, 68, 75, 86], "short": [3, 15, 39], "user": [3, 9, 10, 18, 19, 22, 48, 50, 61, 73, 74, 75, 78, 86], "respond": [3, 50, 67, 76], "timescal": 3, "biolog": 3, "within": [3, 15, 17, 19, 25, 36, 65, 75, 77, 78], "integr": [3, 4, 35, 52, 77, 78], "neuron": 3, "reli": 3, "slower": 3, "transfer": [3, 86], "characterist": [3, 36, 39], "typic": [3, 19, 27, 36, 39, 46, 56, 80], "would": [3, 10], "sever": [3, 36, 39, 50, 75], "ten": 3, "millisecond": [3, 44], "consider": 3, "durat": [3, 15, 25, 67, 76], "notabl": 3, "longer": [3, 39], "averag": 3, "action": [3, 9, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 67, 73, 74, 76], "potenti": [3, 31, 36, 75, 83], "around": [3, 64, 66, 68, 69, 73, 74, 78, 80], "m": [3, 13, 57], "ha": [3, 9, 10, 13, 17, 19, 28, 31, 33, 34, 38, 39, 43, 46, 48, 49, 61, 71, 73, 74, 75, 83], "shorter": [3, 39], "150": [3, 36], "microsecond": [3, 15, 25, 78], "slot": [3, 43, 47, 48, 50, 75, 82, 86], "quickli": [3, 47, 63, 75, 85], "freed": 3, "itself": [3, 12, 16, 27, 36, 37, 38, 39, 50], "overhead": [3, 63, 73, 74, 77, 78], "complex": [3, 31, 78], "analysi": [3, 73, 74], "extract": [3, 48], "phenomenon": 3, "interest": [3, 35], "electrod": [4, 5, 15, 31, 35, 58, 73, 74], "support": [4, 47, 52, 78, 85, 86], "optic": [4, 5, 9, 11, 21, 30, 67, 76], "small": [4, 10, 31, 39, 43, 49], "e": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "g": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "mous": [4, 67, 73, 74, 76, 78], "electrophysiologi": [4, 5, 57, 58, 83], "compat": [4, 5, 9, 10, 11, 14, 31, 34, 42, 44, 46, 47, 48, 50, 75, 85, 87], "variant": [4, 5], "shuttl": [4, 5], "repositori": [4, 9, 11, 42, 44, 54], "v1": [4, 7, 9, 12, 21, 31, 58, 73, 80], "2": [4, 12, 13, 14, 15, 16, 18, 19, 22, 24, 26, 27, 29, 31, 36, 39, 41, 43, 51, 67], "bom": [4, 5, 7, 8, 31], "locat": [4, 5, 7, 8, 31, 49], "googl": [4, 5, 7, 8, 31, 50, 54], "sheet": [4, 5, 7, 8, 30, 31, 50], "adc": [4, 5, 16, 24, 26, 27, 31, 63, 73, 74], "input": [4, 5, 9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 46, 57, 58, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 86], "map": [4, 5, 13, 18, 31, 64, 78], "etc": [4, 5, 10, 18, 27, 31, 35, 36, 54, 73, 74, 75, 78, 82, 86], "neuralynx": [4, 5], "gold": [4, 5], "pin": [4, 5, 14, 19, 28, 31, 38, 39, 46], "usag": [4, 5, 21, 49, 85], "instruct": [4, 5, 10, 39, 51], "manual": [4, 5, 11, 19, 41, 48, 60, 83], "64": [5, 6, 9, 11, 12, 13, 15, 22, 25, 26, 30, 35, 36, 38, 44, 48, 50, 52, 54, 56, 60, 77], "larg": [5, 15, 38, 86], "rat": 5, "64l": [6, 7], "omnet": [6, 7, 31, 50], "adpat": [6, 7, 31], "nano": [6, 8, 50], "z": [6, 8, 46, 50], "eib": [7, 8, 31, 52], "imped": [7, 15, 26, 27, 36, 39], "tester": 7, "plate": 7, "chanbnel": 7, "intern": [7, 11, 15, 16, 27, 75, 86], "adapt": [8, 39, 52], "silicon": [8, 31, 39, 50, 52], "face": [9, 43], "access": [9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 50, 75, 82, 83], "auxiliari": [9, 10, 26, 44, 77, 83], "io": [9, 10, 13, 14, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 43, 44, 46, 63, 66, 82, 84, 86], "bench": 9, "4x": [9, 46], "feed": 9, "3x": [9, 46], "passiv": [9, 10, 31, 36], "speed": [9, 10, 12, 36, 46, 50], "clock": [9, 10, 16, 18, 20, 21, 22, 23, 31, 36, 46, 47, 50, 65, 71, 75, 86], "12x": [9, 46], "esd": 9, "protect": [9, 19], "bnc": 9, "ribbon": [9, 10, 43], "direct": [9, 10, 14, 16, 24, 26, 27, 36, 46, 47, 63], "12": [9, 16, 18, 20, 24, 36, 39, 63, 73, 74, 85, 86], "output": [9, 10, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 29, 30, 31, 38, 46, 48, 50, 63, 64, 65, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "8": [9, 14, 16, 18, 19, 25, 30, 31, 43, 49, 66, 86], "5v": [9, 16, 31, 38], "harp": [9, 10, 18, 86], "bu": [9, 11, 14, 18, 36, 46], "lot": 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"signal": [10, 11, 16, 18, 20, 30, 36, 39, 50, 78, 79], "shrunk": 10, "delta": [10, 22, 27], "option": [10, 14, 17, 19, 31, 41, 47, 48, 50, 52, 63, 64, 65, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80], "caoxial": 10, "5mm": [10, 39, 43], "audio": [10, 12, 41, 83], "line": [10, 14, 18, 31, 36, 39, 46, 50, 52, 67, 76], "mai": [10, 15, 16, 19, 26, 36, 39, 46, 48, 52, 68, 75], "present": [10, 12, 15, 25, 36, 75, 86], "avail": [10, 15, 21, 24, 48, 52, 53, 67, 73, 74, 75, 76, 78, 83], "particular": [10, 36, 39, 46, 86], "two": [10, 12, 16, 18, 25, 31, 33, 36, 38, 39, 43, 46, 47, 73, 74, 75, 77], "four": [10, 18, 31], "futur": [10, 18, 31, 83], "though": [10, 83], "end": [10, 12, 22, 36, 39, 46, 47], "symmetr": 10, "purpos": [10, 36, 46], "either": [10, 28, 37, 38, 39, 40, 50, 63, 67, 76], "soon": [10, 42], "some": [10, 16, 19, 26, 36, 38, 39, 48, 53, 67, 68, 75, 76, 82, 86], "bug": [10, 54], "sequenc": [10, 15, 24, 27, 28, 35, 36, 78], "been": [10, 15, 75], "fix": [10, 24, 27, 29, 31, 51], 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13, 17, 18, 19, 23, 24, 36, 41, 57, 68, 75, 78], "loss": [10, 36, 39, 46], "lock": [10, 14, 18, 19], "re": [10, 31, 35, 36, 73, 74], "establish": 10, "restart": [10, 47, 48, 86], "log": [10, 57], "sent": [10, 16, 18, 22, 36, 39, 79], "press": [10, 18, 39, 50, 56, 86], "send": [10, 11, 15, 16, 18, 36, 56, 82], "per": [10, 14, 16, 25, 31, 70, 72, 75, 76, 78], "hold": [10, 12, 39, 78], "result": [10, 22, 24, 31, 36, 39, 48, 63, 73, 74, 77, 78], "repeat": [10, 39, 49], "keyboard": 10, "bit": [10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 26, 27, 29, 36, 39, 47, 48, 63, 66, 73, 74, 77, 78, 86], "word": [10, 14, 18, 22, 23, 24, 27, 29, 36], "exampl": [10, 14, 16, 36, 48, 55, 56, 57, 58, 59, 61, 67, 73, 74, 75, 76, 78, 85, 86], "000001": 10, "integ": [10, 16, 22, 24, 26, 63, 66, 73, 74, 77, 78], "100001": 10, "33": [10, 16], "111111": 10, "63": 10, "toggl": [10, 15, 31, 86], "sensit": [10, 38], "first": [10, 14, 16, 29, 39, 47, 50, 62, 70, 71, 72, 73, 74, 83], "illumin": 10, "tinyfpga": 10, "bx": 10, "lattic": 10, "ice40": 10, "deseri": [10, 19, 36, 46, 75], "interpret": [10, 36, 78], "impel": 10, "team": [10, 52], "firmwar": [10, 15, 31, 34, 36, 41, 47, 85], "file": [10, 43, 47, 48, 49, 51, 73, 74, 75, 86], "label": [10, 27, 37], "config": [10, 18, 25], "zero": [11, 14, 73, 74, 78], "freeli": [11, 42, 50, 87], "veri": [11, 15, 17, 36, 38, 43, 50, 68, 84], "brief": 11, "extens": 11, "walkthrough": 11, "pleas": [11, 35, 51, 73, 74, 84], "inerti": [11, 13, 31, 71], "unit": [11, 13, 27, 30, 31, 33, 34, 67, 71, 76, 78], "imu": [11, 13, 31, 33, 34, 57, 58], "orient": [11, 12, 13, 33, 34, 43, 50, 57, 58, 64], "real": [11, 22, 23, 27, 31, 33, 34, 78, 83, 86], "known": 11, "command": [11, 15, 17, 18, 31, 36, 48, 49, 56], "qualiti": [11, 36, 39], "radio": [11, 39], "frequenc": [11, 17, 20, 22, 23, 31, 33, 36, 39, 65, 77, 78, 86], "rotari": [11, 50], "joint": [11, 39, 43, 50], "insid": [11, 39, 43], "lead": [11, 39, 43], "bandwidth": [11, 22, 26, 27, 36, 75, 86], "18": [11, 18, 86], "ghz": [11, 36, 39], "80": [11, 12, 39], "rail": [11, 31], "mountabl": 11, "remot": [11, 28], "json": [11, 56, 73, 74], "encod": [11, 30, 36, 63], "capacit": 11, "sens": [11, 78], "advanc": [11, 52, 61, 83], "stepper": 11, "tmc2130": 11, "silent": 11, "precis": [11, 15, 16, 31, 39, 50], "motion": 11, "interpol": 11, "256": [11, 86], "ustep": 11, "super": [11, 24], "capacitor": 11, "circuitri": [11, 15, 67], "fast": [12, 17, 23, 26, 27], "form": [12, 19, 46, 47, 73, 74, 75, 86], "hub": [12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 29, 30, 31, 49, 85, 86], "ucla": [12, 14, 36, 50, 70, 71, 72, 75], "altern": [12, 31, 39, 82], "hiros": [12, 39], "x": [12, 14, 18, 27, 39, 52, 86], "fl": [12, 39], "pr": [12, 39], "smt1": [12, 39], "socket": [12, 39, 43, 83], "synchronis": [12, 41, 50], "basest": [12, 31, 41], "x2": 12, "sync": [12, 14, 24, 28, 41], "vive": [12, 21, 31, 33, 41, 80], "adaptor": [12, 41], "easili": 12, "break": 12, "incorrectli": 12, "pull": [12, 39], 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63], "por": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30], "0x00": [13, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 85, 86], "enabl": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 36, 47, 58, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 80], "r": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "w": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "none": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 64, 65, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "lsb": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 77], "disabl": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 47, 65, 67, 76], "stream": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 36, 57, 58, 61, 63, 64, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80, 83, 84, 85, 86], "0x0": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30], "0x1": 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"now": [3, 37, 47, 48, 49, 73, 74], "rang": [3, 15, 16, 19, 25, 31, 36, 61], "so": [3, 10, 12, 15, 25, 31, 36, 38, 39, 47, 49, 51, 52, 58], "lab": [3, 42, 44, 47], "do": [3, 10, 12, 14, 18, 28, 31, 36, 47, 49, 52, 54, 67, 73, 74, 75, 76, 79], "spend": 3, "monei": 3, "purchas": [3, 52, 54], "separ": [3, 31, 39], "extra": 3, "tool": [3, 39, 43, 47, 48, 60, 62, 87], "wish": [3, 67, 76], "add": [3, 47], "experi": [3, 10, 50, 87], "addition": [3, 9, 78], "those": [3, 19, 83], "new": [3, 16, 48, 75, 87], "studi": 3, "brain": [3, 44], "backend": 3, "infrastructur": 3, "reus": 3, "control": [3, 9, 10, 11, 14, 18, 21, 25, 26, 27, 29, 31, 36, 39, 46, 56, 57, 65, 68, 70, 71, 72, 75, 79, 85, 86], "almost": 3, "recod": 3, "There": [3, 10, 22, 27, 31, 53, 74, 75, 82, 83], "grow": 3, "appreci": 3, "examin": [3, 73, 74, 85, 86], "natur": [3, 83], "behaviour": 3, "anim": [3, 4, 5, 11, 31, 50, 87], "often": [3, 12, 19], "larger": [3, 39, 63, 73, 74, 75, 77, 78], "intric": 3, "perhap": 3, "experiment": 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"extrem": [3, 36], "flexibl": [3, 36, 39], "abl": [3, 31, 39, 47], "doe": [3, 10, 11, 13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 38, 48, 52, 57, 61], "becom": [3, 17, 28, 38], "twist": [3, 11, 50, 56], "maintain": [3, 11], "electr": [3, 4, 5, 11, 21, 31, 39, 67, 76], "rest": [3, 15, 67], "path": [3, 36, 47, 49, 86], "move": [3, 11, 18, 31, 39, 42, 50, 56, 78, 87], "through": [3, 9, 15, 24, 37, 50, 63, 67, 73, 74, 76, 78], "receiv": [3, 14, 16, 18, 19, 22, 28, 30, 31, 39, 57, 79, 83], "inform": [3, 10, 13, 19, 21, 23, 30, 35, 39, 52, 54, 57, 58, 61, 63, 68, 71, 73, 74, 75, 78, 83, 84, 85, 86], "drive": [3, 4, 5, 10, 17, 36, 50], "motor": [3, 11], "activ": [3, 10, 11, 12, 16, 17, 19, 36, 39, 49, 50, 73, 74, 78], "In": [3, 14, 16, 18, 36, 46, 47, 79, 83], "close": [3, 22, 44, 46, 48, 50, 59, 60, 68], "loop": [3, 22, 24, 44, 46, 48, 50, 59, 60, 63, 68, 85], "process": [3, 39, 48, 49, 61, 73, 74, 83], "act": [3, 79], "upon": 3, "optogenet": [3, 25], "stimul": [3, 4, 5, 21, 27, 28, 35, 50, 57, 67, 68, 76, 78, 86], "area": [3, 39, 78], "everi": [3, 27, 30, 36, 47, 75, 82], "certain": 3, "event": [3, 9, 10, 46, 68, 83], "detect": [3, 14, 19, 24, 30, 38, 40, 50], "describ": [3, 18, 31, 33, 34, 36, 39, 58, 61, 86], "much": [3, 31], "pass": [3, 14, 19, 27, 30, 75], "initi": [3, 18, 51, 85, 86], "respons": [3, 22, 60, 73, 74, 75, 78], "primarili": [3, 83], "spent": 3, "challeng": [3, 39], "number": [3, 7, 10, 14, 15, 17, 22, 23, 25, 27, 29, 31, 36, 46, 53, 63, 67, 73, 74, 75, 76, 77, 78, 86], "channel": [3, 4, 5, 6, 11, 15, 16, 19, 20, 24, 25, 26, 27, 31, 36, 41, 50, 54, 57, 58, 63, 73, 74, 75, 76, 77, 78, 85], "increas": [3, 18, 27, 31, 38, 39, 46, 50, 67, 68, 75, 86], "short": [3, 15, 39], "user": [3, 9, 10, 18, 19, 22, 48, 50, 61, 73, 74, 75, 78, 86], "respond": [3, 50, 67, 76], "timescal": 3, "biolog": 3, "within": [3, 15, 17, 19, 25, 36, 65, 75, 77, 78], "integr": [3, 4, 35, 52, 77, 78], "neuron": 3, "reli": 3, "slower": 3, "transfer": [3, 86], "characterist": [3, 36, 39], "typic": [3, 19, 27, 36, 39, 46, 56, 80], "would": [3, 10], "sever": [3, 36, 39, 50, 75], "ten": 3, "millisecond": [3, 44], "consider": 3, "durat": [3, 15, 25, 67, 76], "notabl": 3, "longer": [3, 39], "averag": 3, "action": [3, 9, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 67, 73, 74, 76], "potenti": [3, 31, 36, 75, 83], "around": [3, 64, 66, 68, 69, 73, 74, 78, 80], "m": [3, 13, 57], "ha": [3, 9, 10, 13, 17, 19, 28, 31, 33, 34, 38, 39, 43, 46, 48, 49, 61, 71, 73, 74, 75, 83], "shorter": [3, 39], "150": [3, 36], "microsecond": [3, 15, 25, 78], "slot": [3, 43, 47, 48, 50, 75, 82, 86], "quickli": [3, 47, 63, 75, 85], "freed": 3, "itself": [3, 12, 16, 27, 36, 37, 38, 39, 50], "overhead": [3, 63, 73, 74, 77, 78], "complex": [3, 31, 78], "analysi": [3, 73, 74], "extract": [3, 48], "phenomenon": 3, "interest": [3, 35], "electrod": [4, 5, 15, 31, 35, 58, 73, 74], "support": [4, 47, 52, 78, 85, 86], "optic": [4, 5, 9, 11, 21, 30, 67, 76], "small": [4, 10, 31, 39, 43, 49], "e": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "g": [4, 5, 11, 14, 15, 27, 28, 31, 35, 36, 38, 39, 49, 61, 75, 78, 82, 86], "mous": [4, 67, 73, 74, 76, 78], "electrophysiologi": [4, 5, 57, 58, 83], "compat": [4, 5, 9, 10, 11, 14, 31, 34, 42, 44, 46, 47, 48, 50, 75, 85, 87], "variant": [4, 5], "shuttl": [4, 5], "repositori": [4, 9, 11, 42, 44, 54], "v1": [4, 7, 9, 12, 21, 31, 58, 73, 80], "2": [4, 12, 13, 14, 15, 16, 18, 19, 22, 24, 26, 27, 29, 31, 36, 39, 41, 43, 51, 67], "bom": [4, 5, 7, 8, 31], "locat": [4, 5, 7, 8, 31, 49], "googl": [4, 5, 7, 8, 31, 50, 54], "sheet": [4, 5, 7, 8, 30, 31, 50], "adc": [4, 5, 16, 24, 26, 27, 31, 63, 73, 74], "input": [4, 5, 9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 46, 57, 58, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 86], "map": [4, 5, 13, 18, 31, 64, 78], "etc": [4, 5, 10, 18, 27, 31, 35, 36, 54, 73, 74, 75, 78, 82, 86], "neuralynx": [4, 5], "gold": [4, 5], "pin": [4, 5, 14, 19, 28, 31, 38, 39, 46], "usag": [4, 5, 21, 49, 85], "instruct": [4, 5, 10, 39, 51], "manual": [4, 5, 11, 19, 41, 48, 60, 83], "64": [5, 6, 9, 11, 12, 13, 15, 22, 25, 26, 30, 35, 36, 38, 44, 48, 50, 52, 54, 56, 60, 77], "larg": [5, 15, 38, 86], "rat": 5, "64l": [6, 7], "omnet": [6, 7, 31, 50], "adpat": [6, 7, 31], "nano": [6, 8, 50], "z": [6, 8, 46, 50], "eib": [7, 8, 31, 52], "imped": [7, 15, 26, 27, 36, 39], "tester": 7, "plate": 7, "chanbnel": 7, "intern": [7, 11, 15, 16, 27, 75, 86], "adapt": [8, 39, 52], "silicon": [8, 31, 39, 50, 52], "face": [9, 43], "access": [9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 50, 75, 82, 83], "auxiliari": [9, 10, 26, 44, 77, 83], "io": [9, 10, 13, 14, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 43, 44, 46, 63, 66, 82, 84, 86], "bench": 9, "4x": [9, 46], "feed": 9, "3x": [9, 46], "passiv": [9, 10, 31, 36], "speed": [9, 10, 12, 36, 46, 50], "clock": [9, 10, 16, 18, 20, 21, 22, 23, 31, 36, 46, 47, 50, 65, 71, 75, 86], "12x": [9, 46], "esd": 9, "protect": [9, 19], "bnc": 9, "ribbon": [9, 10, 43], "direct": [9, 10, 14, 16, 24, 26, 27, 36, 46, 47, 63], "12": [9, 16, 18, 20, 24, 36, 39, 63, 73, 74, 85, 86], "output": [9, 10, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 29, 30, 31, 38, 46, 48, 50, 63, 64, 65, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "8": [9, 14, 16, 18, 19, 25, 30, 31, 43, 49, 66, 86], "5v": [9, 16, 31, 38], "harp": [9, 10, 18, 86], "bu": [9, 11, 14, 18, 36, 46], "lot": [9, 31, 57, 58, 61], "indic": [9, 10, 11, 16, 19, 24, 27, 29, 36, 39, 41, 48, 66, 73, 74, 78, 86], "led": [9, 11, 18, 25, 31, 37, 38, 43, 48, 50, 66, 70, 72], "6": [9, 10, 16, 18, 26, 31, 33, 39, 41, 51], "button": [9, 11, 18, 41, 50, 56, 66, 73, 74, 75], "mark": [9, 10, 14, 38], "trigger": [9, 14, 15, 19, 21, 25, 27, 31, 36, 46, 67, 68, 75, 76, 78, 79], "rug": 9, "m6": 9, "20": [9, 11, 16, 39, 73, 74, 86], "both": [9, 11, 12, 25, 30, 31, 36, 39, 47, 48, 62, 75, 76], "metric": 9, "imperi": 9, "tabl": [9, 11, 15, 25, 27, 36, 47, 75, 78, 82, 83, 85, 86], "19": [9, 86], "rack": 9, "fulli": [9, 13], "sourc": [9, 10, 13, 14, 15, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 36, 39, 46, 48, 51, 52, 62, 63, 64, 66, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "gatewar": [9, 31, 33, 34, 36, 46], "made": [9, 12, 15, 31, 37, 39, 52, 78], "fpga": [9, 10, 31, 33, 36, 46, 47], "toolchain": [9, 10], "yosi": [9, 10], "nextpnr": [9, 10], "alwai": [10, 16, 22, 38, 46, 68, 75], "neglect": 10, "signal": [10, 11, 16, 18, 20, 30, 36, 39, 50, 78, 79], "shrunk": 10, "delta": [10, 22, 27], "option": [10, 14, 17, 19, 31, 41, 47, 48, 50, 52, 63, 64, 65, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80], "caoxial": 10, "5mm": [10, 39, 43], "audio": [10, 12, 41, 83], "line": [10, 14, 18, 31, 36, 39, 46, 50, 52, 67, 76], "mai": [10, 15, 16, 19, 26, 36, 39, 46, 48, 52, 68, 75], "present": [10, 12, 15, 25, 36, 75, 86], "avail": [10, 15, 21, 24, 48, 52, 53, 67, 73, 74, 75, 76, 78, 83], "particular": [10, 36, 39, 46, 86], "two": [10, 12, 16, 18, 25, 31, 33, 36, 38, 39, 43, 46, 47, 73, 74, 75, 77], "four": [10, 18, 31], "futur": [10, 18, 31, 83], "though": [10, 83], "end": [10, 12, 22, 36, 39, 46, 47], "symmetr": 10, "purpos": [10, 36, 46], "either": [10, 28, 37, 38, 39, 40, 50, 63, 67, 75, 76], "soon": [10, 42], "some": [10, 16, 19, 26, 36, 38, 39, 48, 53, 67, 68, 75, 76, 82, 86], "bug": [10, 54], "sequenc": [10, 15, 24, 27, 28, 35, 36, 78], "been": [10, 15, 75], "fix": [10, 24, 27, 29, 31, 51], "later": [10, 39], "rgb": [10, 43, 48], "insert": 10, "thin": [10, 36, 38, 39, 50, 68], "screw": [10, 39], "driver": [10, 11, 25, 31, 52, 53, 72, 75, 86], "just": [10, 31, 35, 36, 39, 50, 73, 74, 78, 83], "below": [10, 15, 27, 36, 38, 41, 43], "onboard": [10, 31, 36, 57, 71], "letter": 10, "c": [10, 13, 39, 46, 52, 78, 84], "d": [10, 86], "match": [10, 49, 73, 74, 75], "addit": [10, 35, 37, 50, 82], "50": [10, 17, 30, 36, 39, 46], "ohm": [10, 17, 36, 39, 46], "transmiss": [10, 19, 24, 36, 46], "matter": [10, 39], "connector": [10, 12, 31, 39, 46, 47, 50], "remov": [10, 12, 26, 33, 39, 77, 78], "improperli": 10, "state": [10, 14, 17, 18, 19, 25, 27, 36, 48, 65, 66, 68, 73, 74, 85, 86], "diagram": [10, 15, 16, 25, 36, 78], "definit": [10, 15, 19, 24, 25, 27, 61, 67, 76, 78, 86], "color": [10, 16, 18, 48, 73, 74], "legend": 10, "half": 10, "fill": 10, "circl": 10, "flash": [10, 30, 36, 47], "error": [10, 13, 14, 15, 17, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 36, 73, 74], "statu": [10, 13, 17, 18, 19, 23, 24, 36, 41, 57, 68, 75, 78], "loss": [10, 36, 39, 46], "lock": [10, 14, 18, 19], "re": [10, 31, 35, 36, 73, 74], "establish": 10, "restart": [10, 47, 48, 86], "log": [10, 57], "sent": [10, 16, 18, 22, 36, 39, 79], "press": [10, 18, 39, 50, 56, 86], "send": [10, 11, 15, 16, 18, 36, 56, 82], "per": [10, 14, 16, 25, 31, 70, 72, 75, 76, 78], "hold": [10, 12, 39, 78], "result": [10, 22, 24, 31, 36, 39, 48, 63, 73, 74, 77, 78], "repeat": [10, 39, 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46, 47, 73, 74, 75, 86], "hub": [12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 29, 30, 31, 49, 85, 86], "ucla": [12, 14, 36, 50, 70, 71, 72, 75], "altern": [12, 31, 39, 82], "hiros": [12, 39], "x": [12, 14, 18, 27, 39, 52, 86], "fl": [12, 39], "pr": [12, 39], "smt1": [12, 39], "socket": [12, 39, 43, 83], "synchronis": [12, 41, 50], "basest": [12, 31, 41], "x2": 12, "sync": [12, 14, 24, 28, 41], "vive": [12, 21, 31, 33, 41, 80], "adaptor": [12, 41], "easili": 12, "break": 12, "incorrectli": 12, "pull": [12, 39], "view": [12, 48, 78], "we": [12, 31, 35, 36, 39, 46, 48, 51, 52, 83, 84], "red": [12, 47, 78], "tube": [12, 39, 43], "grip": 12, "sleev": 12, "secur": 12, "anchor": 12, "tab": [12, 31, 37, 38, 73, 74, 78], "strain": [12, 39], "relief": [12, 39], "sinc": [12, 16, 67, 71, 76, 85, 86], "snug": 12, "fit": [12, 46, 78], "don": [12, 18, 48, 78], "t": [12, 18, 36, 48, 78, 86], "recommend": [12, 39, 48, 62, 82], "replac": [12, 39, 73, 74], "author": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30], "jonathan": [13, 15, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 28, 29, 30], "p": [13, 15, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 28, 29, 30, 86], "newman": [13, 15, 16, 17, 18, 19, 20, 22, 24, 25, 26, 27, 28, 29, 30, 85, 86], "version": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 46, 49, 50, 51, 85, 86], "id": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 43, 85, 86], "9": [13, 14, 16, 19, 22, 27, 30, 31, 33, 34, 38, 57, 58], "axi": [13, 31, 33, 34, 57, 58, 64], "acceler": 13, "At": [13, 30, 48, 82], "core": [13, 30, 48, 61, 82], "correspond": [13, 16, 27, 70, 72, 78], "chip": [13, 16, 26, 27, 28, 31, 36, 57, 64, 73, 74, 78, 79], "implement": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 35, 36, 46, 52], "hard": [13, 15, 26, 46, 64, 84], "code": [13, 15, 16, 24, 26, 30, 36, 46, 57, 58, 64, 85], "100": [13, 15, 16, 31, 36, 46, 64, 66, 70, 72, 86], "hz": [13, 27, 29, 31, 64, 65, 69, 86], "updat": [13, 16, 27, 36, 41, 53, 64], "rate": [13, 19, 20, 22, 23, 26, 27, 29, 31, 64, 69, 75, 86], "sensor": [13, 26, 30, 35, 36, 50, 57, 58, 64, 70, 72, 80, 82], "fusion": [13, 64], "ndof": [13, 64], "mode": [13, 14, 18, 24, 31, 49, 58, 64, 70, 71, 72, 74, 75], "hardcod": [13, 64], "name": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 46, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 86], "effect": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 39, 63], "por": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30], "0x00": [13, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 85, 86], "enabl": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 36, 47, 58, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 80], "r": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "w": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 39, 86], "none": [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 64, 65, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 80, 86], "lsb": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 77], "disabl": [13, 14, 16, 17, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 47, 65, 67, 76], "stream": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 36, 57, 58, 61, 63, 64, 66, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80, 83, 84, 85, 86], "0x0": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30], "0x1": [13, 14, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30], "sign": [13, 16, 48, 63, 77, 78], "except": [13, 71], "calibr": [13, 24, 31], "byte": [13, 24, 75, 86], "convers": [13, 27, 63, 77, 78], "euler": 13, "angl": 13, "tait": 13, "bryan": 13, "formal": 13, "yaw": 13, "360": 13, "degre": 13, "roll": 13, "180": 13, "pitch": 13, "90": 13, "circ": 13, "16": [13, 14, 16, 18, 22, 26, 27, 29, 31, 63, 77, 78, 86], "quaternion": 13, "14": [13, 14, 16, 27, 51, 63, 86], 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74, 75, 76, 77, 78], "0x8007": 14, "magic_mask": 14, "magic": [14, 27], "mask": 14, "bitmask": [14, 25], "invers": [14, 39], "30": [14, 27, 31, 86], "wait": [14, 39], "0x8008": 14, "0x8009": 14, "magic_wait": 14, "max": [14, 19, 25, 31, 33, 34, 76, 86], "cancel": 14, "go": [14, 48, 49], "indefinit": 14, "0x800a": 14, "datamod": 14, "normal": [14, 18, 24, 47, 49], "index": [14, 27, 30, 31, 36, 39, 42, 49, 86], "reserv": [14, 18, 27, 46, 86], "7": [14, 16, 26, 36, 38, 41, 46, 49, 86], "1bit": 14, "0xf": 14, "16bit": 14, "00": [14, 18, 85, 86], "01": [14, 18, 85, 86], "10": [14, 15, 16, 18, 19, 24, 25, 27, 29, 48, 52, 85, 86], "11": [14, 16, 18, 19, 24, 51, 86], "msb": [14, 18], "0x800b": 14, "datalines0": 14, "0xb": 14, "0xc": 14, "0xd": 14, "0xe": 14, "0x800c": 14, "datalines1": 14, "0x8010": 14, "gpio_dir": 14, "gpio": [14, 18, 28, 79], "0b0": [14, 16, 17, 19], "0b1": [14, 16, 17, 19], "0x8011": 14, "gpio_val": 14, "0x8012": 14, "ds90ubx": 14, "n": [14, 15, 17, 20, 22, 23, 25, 27, 28, 29, 31, 63, 73, 74, 86], "i2c": [14, 36], "less": [14, 31, 39, 63, 73, 74, 77, 78, 86], "jie": [15, 25, 26, 85, 86], "zhang": [15, 25, 26, 85, 86], "combin": [15, 36, 46, 60, 61, 73, 74, 75, 78, 79], "bipolar": 15, "stimuli": [15, 27, 67, 76, 78], "circuit": [15, 18, 25, 27, 31, 36, 38, 86], "enhanc": 15, "howland": [15, 31], "pump": [15, 31], "driven": [15, 83], "dac": [15, 16, 26, 27, 63], "volt": [15, 18, 19, 27, 31, 33, 34, 38, 63, 77, 78], "regul": [15, 38], "epoch": 15, "minim": [15, 31, 39], "nois": [15, 27, 67], "trace": [15, 38], "dual": [15, 31, 76], "sit": [15, 50], "outsid": 15, "stimulu": [15, 25, 27, 28, 31, 67, 76, 78, 79], "puls": [15, 25, 27, 31, 67, 76, 78], "ground": [15, 38, 39], "electrolysi": 15, "due": [15, 31, 39], "charg": [15, 27, 31], "imbal": 15, "shunt": 15, "resistor": [15, 25, 31], "accumul": [15, 18, 36, 86], "slight": 15, "mismatch": [15, 73, 74], "chosen": [15, 78], "optim": [15, 27, 59, 75], "stabil": 15, "stabl": [15, 48], "macroelectrod": 15, "cut": 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27, 36, 86], "pulsedur1": 15, "0x05": [15, 16, 17, 19, 24, 25, 26, 27, 36, 86], "interphaseinterv": 15, "inter": [15, 25, 67, 78], "interv": [15, 25, 67, 76, 78], "0x06": [15, 16, 17, 19, 24, 25, 26, 27, 36, 86], "pulsedur2": 15, "0x07": [15, 16, 24, 25, 26, 27, 36, 86], "interpulseinterv": 15, "10000": 15, "0x08": [15, 16, 24, 25, 26, 27, 36, 86], "burstcnt": [15, 25], "burst": [15, 25, 67, 76], "count": [15, 20, 24, 46, 86], "0x09": [15, 16, 24, 25, 26, 27, 86], "interburstinterv": [15, 67, 76], "0x0a": [15, 16, 24, 25, 26, 27, 86], "traincnt": [15, 25], "train": [15, 25, 31, 67, 76, 78], "0x0b": [15, 16, 24, 25, 26, 27, 86], "traindelai": [15, 25, 67, 76], "delai": [15, 17, 23, 25, 27, 65, 67, 76], "0x0c": [15, 16, 24, 25, 26, 27, 86], "els": [15, 19], "deliv": [15, 25, 31, 67, 76], "0x0d": [15, 16, 24, 25, 27], "poweron": [15, 67], "estim": 15, "0x0e": [15, 24, 25, 26, 27], "ignor": [15, 19, 22, 25, 28], "common": [15, 25, 39, 61], "0x0f": [15, 24, 26, 27], "restcurr": 15, "0x10": 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52, 73, 74, 85], "repres": 18, "bank": 18, "down": [18, 19, 39, 56, 75, 78], "pnn": 18, "recoveri": [18, 27, 28, 78], "clk": [18, 22], "sclk": 18, "dat": 18, "cmd": [18, 48], "sw": 18, "0b00": 18, "shift": [18, 24], "slow": 18, "0b01": 18, "slow1": 18, "slow0": 18, "next": [18, 35, 49, 73, 74, 78], "0b10": 18, "0b11": 18, "critic": 18, "apsect": 18, "defin": [18, 19, 24, 27, 29, 30, 31, 36, 78, 79, 86], "acq": 18, "done": [18, 39, 47, 49, 50], "na": [18, 36], "brigh": 18, "dimmest": 18, "brightest": 18, "pll": [18, 19], "good": [18, 39, 46, 67, 73, 74, 84], "direciton": 18, "ledmod": 18, "0x0003": 18, "ledlvl": 18, "0x0007": 18, "dertermin": 18, "overal": [18, 75, 86], "linearli": [18, 25], "harpconf": 18, "gpiodir": 18, "configuraiton": 18, "23": [19, 86], "monitor": [19, 21, 27], "ds90ub9x": [19, 21, 70, 71, 72], "rf": [19, 36, 39], "crc": [19, 36], "inplementaiton": 19, "appropri": [19, 31, 36, 54, 57, 58], "maximum": [19, 22, 27, 31, 38, 46, 68, 76, 78], "dc": [19, 27, 31, 36, 39, 68, 78], "exce": [19, 31, 36], "absolut": [19, 31, 57, 58], "overvoltag": [19, 36], "care": [19, 27, 36, 68], "function": [19, 26, 27, 31, 36, 38, 39, 50, 67, 73, 74, 76, 82], "gpostat": 19, "gpo": [19, 68], "downto": 19, "despwr": 19, "pdb": 19, "affect": [19, 25], "portvoltag": 19, "eeprom": 19, "000": 19, "001": 19, "min": [19, 31, 33, 34], "032": 19, "033": 19, "034": 19, "035": 19, "108": 19, "109": 19, "110": 19, "111": 19, "savevoltag": 19, "volatil": [19, 36], "linkstat": 19, "linkopt": 19, "auto": [19, 47], "shutdown": [19, 31], "cv": 19, "pp": 19, "sl": 19, "codeword": 19, "goe": [19, 27], "pariti": 19, "reflect": [19, 27], "ds90ub9x4": 19, "One": [19, 34, 73, 74], "were": 19, "payload": 19, "free": [19, 56, 65], "forward": [19, 36, 67, 73, 74, 76], "fpd": 19, "iii": [19, 36], "unlock": 19, "period": [20, 23, 48, 64, 67, 69, 70, 72, 76, 80], "aliv": 20, "clk_div": [20, 22, 23], "clk_hz": [20, 22, 23], "hb_hz": [20, 22, 23], "divid": [20, 22, 23], "ratio": [20, 22, 23, 39], 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"LEDs": [[10, "leds"]], "Buttons": [[10, "buttons"]], "Gateware": [[10, "gateware"]], "Updating the Gateware": [[10, "updating-the-gateware"]], "Coaxial Commutators": [[11, "coaxial-commutators"]], "Connections and Cables": [[12, "connections-and-cables"]], "Connection types": [[12, "connection-types"]], "Headstage Link": [[12, "headstage-link"]], "Digital and Analog I/O": [[12, "digital-and-analog-i-o"]], "Lighthouses": [[12, "lighthouses"], [50, "lighthouses"]], "Commutator link": [[12, "commutator-link"]], "Cable List": [[12, "cable-list"]], "Connecting MMCX": [[12, "connecting-mmcx"]], "Connecting Micro-Coax Headstage Tethers": [[12, "connecting-micro-coax-headstage-tethers"]], "BNO055": [[13, "bno055"]], "Description": [[13, "description"], [14, "description"], [15, "description"], [16, "description"], [17, "description"], [18, "description"], [19, "description"], [20, "description"], [22, "description"], [23, "description"], [24, "description"], [25, "description"], [26, "description"], [27, "description"], [28, "description"], [29, "description"], [30, "description"]], "Register Programming": [[13, "register-programming"], [14, "register-programming"], [15, "register-programming"], [16, "register-programming"], [17, "register-programming"], [18, "register-programming"], [19, "register-programming"], [20, "register-programming"], [22, "register-programming"], [23, "register-programming"], [24, "register-programming"], [25, "register-programming"], [26, "register-programming"], [27, "register-programming"], [28, "register-programming"], [29, "register-programming"], [30, "register-programming"]], "Device To Host Data Frames": [[13, "device-to-host-data-frames"], [14, "device-to-host-data-frames"], [15, "device-to-host-data-frames"], [16, "device-to-host-data-frames"], [17, "device-to-host-data-frames"], [18, "device-to-host-data-frames"], [19, "device-to-host-data-frames"], [20, "device-to-host-data-frames"], [22, "device-to-host-data-frames"], [23, "device-to-host-data-frames"], [24, "device-to-host-data-frames"], [25, "device-to-host-data-frames"], [26, "device-to-host-data-frames"], [27, "device-to-host-data-frames"], [28, "device-to-host-data-frames"], [29, "device-to-host-data-frames"], [30, "device-to-host-data-frames"]], "Host To Device Data Frames": [[13, "host-to-device-data-frames"], [14, "host-to-device-data-frames"], [15, "host-to-device-data-frames"], [16, "host-to-device-data-frames"], [17, "host-to-device-data-frames"], [18, "host-to-device-data-frames"], [19, "host-to-device-data-frames"], [20, "host-to-device-data-frames"], [22, "host-to-device-data-frames"], [23, "host-to-device-data-frames"], [24, "host-to-device-data-frames"], [25, "host-to-device-data-frames"], [26, "host-to-device-data-frames"], [27, "host-to-device-data-frames"], [28, "host-to-device-data-frames"], [29, "host-to-device-data-frames"], [30, "host-to-device-data-frames"]], "DS90UB9X Raw Device": [[14, "ds90ub9x-raw-device"]], "Managed Registers": [[14, "managed-registers"], [14, "id1"], [24, "managed-registers"], [24, "id1"], [26, "managed-registers"], [26, "id1"], [27, "managed-registers"], [27, "id1"]], "Unmanaged Registers": [[14, "unmanaged-registers"], [24, "unmanaged-registers"], [24, "id2"], [26, "unmanaged-registers"], [26, "id2"], [27, "unmanaged-registers"], [27, "id2"]], "HS64 Electrical Stimulator": [[15, "hs64-electrical-stimulator"]], "HS64 Electrical Stimulator Registers": [[15, "estim-hs64-regs"]], "FMC Host Analog IO Device": [[16, "fmc-host-analog-io-device"]], "FMC Host Clock Output Device": [[17, "fmc-host-clock-output-device"]], "FMC Host Digital IO Device": [[18, "fmc-host-digital-io-device"]], "Breakout to Host Serialization": [[18, "breakout-to-host-serialization"]], "Host to Breakout Serialization": [[18, "host-to-breakout-serialization"]], "FMC Link Controller": [[19, "fmc-link-controller"]], "Heartbeat": [[20, "heartbeat"]], "ONI Datasheets": [[21, "oni-datasheets"]], "Load Test Device": [[22, "load-test-device"]], "Memory Usage Monitor": [[23, "memory-usage-monitor"]], "Neuropixels V1": [[24, "neuropixels-v1"]], "HS64 Optical Stimulator": [[25, "hs64-optical-stimulator"]], "HS64 Optical Stimulator Registers": [[25, "ostim-hs64-regs"]], "RHD2164": [[26, "rhd2164"]], "RHS2116": [[27, "rhs2116"]], "RHS2116 Trigger": [[28, "rhs2116-trigger"]], "Test0 Device": [[29, "test0-device"]], "TS4231 Array for Vive V1 Base Stations": [[30, "ts4231-array-for-vive-v1-base-stations"]], "Headstage-64": [[31, "headstage-64"]], "Data Link Serializaiton": [[31, "data-link-serializaiton"]], "Electrophysiology & Auxiliary Analog Inputs": [[31, "electrophysiology-auxiliary-analog-inputs"]], "3D Position Tracking": [[31, "d-position-tracking"]], "3D Orientation Tracking": [[31, "d-orientation-tracking"]], "Neural Stimulation": [[31, "neural-stimulation"]], "Optical Stimulation": [[31, "optical-stimulation"]], "Electical Stimulation": [[31, "electical-stimulation"]], "Test Board for Headstage-64": [[32, "test-board-for-headstage-64"]], "Neuropixels-1.0 Headstage": [[33, "neuropixels-1-0-headstage"]], "Coaxial Link": [[33, "coaxial-link"], [34, "coaxial-link"]], "Neuropixels-1.0e Headstage": [[34, "neuropixels-1-0e-headstage"]], "Headstages": [[35, "headstages"]], "Coaxial Data Serialization & Power": [[36, "coaxial-data-serialization-power"]], "Power": [[36, "power"]], "DS90UB933/4 Communication Protocols": [[36, "ds90ub933-4-communication-protocols"]], "Data Serialization": [[36, "data-serialization"]], "Register Configuration": [[36, "register-configuration"]], "Tethered Headstage Voltages": [[38, "tethered-headstage-voltages"]], "Setting headstage voltage": [[38, "setting-headstage-voltage"]], "Measuring headstage voltage": [[38, "measuring-headstage-voltage"]], "Rebooting": [[38, "rebooting"]], "Making Coaxial Tethers": [[39, "making-coaxial-tethers"]], "Which Coaxial Cable?": [[39, "which-coaxial-cable"]], "Assembly Guide": [[39, "assembly-guide"]], "Headstage Side": [[39, "headstage-side"]], "Host/Commutator Side": [[39, "host-commutator-side"]], "3D-Tracking Lighthouses": [[40, "d-tracking-lighthouses"]], "Miniscopes": [[42, "miniscopes"]], "UCLA Miniscope V3": [[42, "ucla-miniscope-v3"]], "UCLA Miniscope V4": [[42, "ucla-miniscope-v4"]], "NINScope": [[42, "ninscope"]], "FeatherScope & Kiloscope": [[42, "featherscope-kiloscope"]], "PCIe Bracket Assembly": [[43, "pcie-bracket-assembly"]], "Materials": [[43, "materials"]], "Bill of materials": [[43, "id1"]], "Insert the PCIe Host Module": [[43, "insert-the-pcie-host-module"], [48, "insert-the-pcie-host-module"]], "PCIe Host": [[44, "pcie-host"], [50, "pcie-host"]], "Synchronizing Multiple PCIe Hosts": [[45, "synchronizing-multiple-pcie-hosts"]], "Host Module": [[46, "host-module"]], "Numato Nereid": [[46, "numato-nereid"]], "PCIe Stack": [[46, "pcie-stack"]], "Programming a Blank PCIe Host (Windows)": [[47, "programming-a-blank-pcie-host-windows"]], "Setup Guide for Windows": [[48, "setup-guide-for-windows"]], "Disable Secure Boot": [[48, "disable-secure-boot"]], "Put Windows In Testing Mode": [[48, "put-windows-in-testing-mode"]], "Install C++ Runtime": [[48, "install-c-runtime"]], "Install Device Driver": [[48, "install-device-driver"]], "Install ONIX Bonsai Library": [[48, "install-onix-bonsai-library"]], "Using Bonsai": [[48, "using-bonsai"]], "Updating Firmware in Windows": [[49, "updating-firmware-in-windows"]], "hw_logo Hardware Guide": [[50, "hw-logo-hardware-guide"]], "Breakout": [[50, "breakout"]], "Headstages & Miniscopes": [[50, "headstages-miniscopes"]], "Commutators": [[50, "commutators"]], "Downloads": [[51, "downloads"], [53, "downloads"]], "oni-repl Console Application": [[51, "oni-repl-console-application"]], "oni-repl Windows downloads": [[51, "id2"]], "PCIe Host Updater": [[51, "pcie-host-updater"]], "PCIe Host update tools": [[51, "id3"]], "RIFFA Device Driver": [[51, "riffa-device-driver"]], "RIFFA PCIe driver": [[51, "id4"]], "PCIe Host Firmware": [[51, "pcie-host-firmware"]], "Hardware Revision 1.4": [[51, "hardware-revision-1-4"]], "FAQ": [[52, "faq"], [53, "faq"]], "resources_logo Resources": [[53, "resources-logo-resources"]], "Support": [[53, "support"]], "Contact": [[54, "contact"]], "Camera Synchronization Workflow": [[55, "camera-synchronization-workflow"]], "Usage": [[55, "usage"], [56, "usage"], [59, "usage"], [86, "usage"]], "Manual Commutator Workflow": [[56, "manual-commutator-workflow"]], "Headstage-64 Workflow": [[57, "headstage-64-workflow"]], "Loading Scripts": [[57, "loading-scripts"], [58, "loading-scripts"], [63, "loading-scripts"]], "Headstage Neuropixels 1.0e Workflow": [[58, "headstage-neuropixels-1-0e-workflow"]], "Latency Test Workflow": [[59, "latency-test-workflow"]], "Example Workflows": [[60, "example-workflows"]], "Bonsai Learning Resources": [[61, "bonsai-learning-resources"]], "Accessing Bonsai.ONIX Documentation": [[61, "accessing-bonsai-onix-documentation"]], "Bonsai.ONIX Tutorial": [[61, "bonsai-onix-tutorial"]], "Installation": [[62, "installation"]], "AnalogIODevice": [[63, "analogiodevice"]], "Configuration": [[63, "configuration"], [64, "configuration"], [65, "configuration"], [66, "configuration"], [67, "configuration"], [68, "configuration"], [69, "configuration"], [70, "configuration"], [71, "configuration"], [72, "configuration"], [73, "configuration"], [74, "configuration"], [76, "configuration"], [77, "configuration"], [78, "configuration"], [79, "configuration"], [80, "configuration"]], "BNO055Device": [[64, "bno055device"]], "ClockOutputDevice": [[65, "clockoutputdevice"]], "DigitalIODevice": [[66, "digitaliodevice"]], "ElectricalStimulationDevice": [[67, "electricalstimulationdevice"]], "Property Pane": [[67, "property-pane"], [73, "property-pane"], [74, "property-pane"], [76, "property-pane"], [78, "property-pane"]], "Configuration GUI": [[67, "configuration-gui"], [73, "configuration-gui"], [74, "configuration-gui"], [75, "configuration-gui"], [76, "configuration-gui"], [78, "configuration-gui"]], "GUI Controls": [[67, "gui-controls"], [76, "gui-controls"]], "HeadstagePortControlDevice": [[68, "headstageportcontroldevice"]], "HeartbeatDevice": [[69, "heartbeatdevice"]], "MiniscopeV3Device": [[70, "miniscopev3device"]], "MiniscopeV4BNO055Device": [[71, "miniscopev4bno055device"]], "MiniscopeV4Device": [[72, "miniscopev4device"]], "NeuropixelsV1Device": [[73, "neuropixelsv1device"]], "Importing IMEC Calibration Data": [[73, "importing-imec-calibration-data"], [74, "importing-imec-calibration-data"]], "Configuring the Probe": [[73, "configuring-the-probe"], [74, "configuring-the-probe"]], "Uploading to the Probe": [[73, "uploading-to-the-probe"], [74, "uploading-to-the-probe"]], "Saving Configurations": [[73, "saving-configurations"], [74, "saving-configurations"]], "Loading Configurations": [[73, "loading-configurations"], [74, "loading-configurations"]], "NeuropixelsV1eDevice": [[74, "neuropixelsv1edevice"]], "ONIContext": [[75, "onicontext"]], "Purpose": [[75, "purpose"]], "Settings \u279e Hubs\u2026": [[75, "settings-hubs"]], "Settings \u279e Host Sync\u2026": [[75, "settings-host-sync"]], "OpticalStimulationDevice": [[76, "opticalstimulationdevice"]], "RHD2164Device": [[77, "rhd2164device"]], "RHS2116Device": [[78, "rhs2116device"]], "RHS2116TriggerDevice": [[79, "rhs2116triggerdevice"]], "TS4231V1Device": [[80, "ts4231v1device"]], "Nodes": [[81, "nodes"]], "Bonsai.ONIX": [[82, "bonsai-onix"]], "Using this Documentation": [[82, "using-this-documentation"]], "Open Ephys GUI": [[83, "open-ephys-gui"]], "Using the Open Ephys GUI for ONIX Data Visualization": [[83, "using-the-open-ephys-gui-for-onix-data-visualization"]], "software_logo Software Guide": [[84, "software-logo-software-guide"]], "oni-repl": [[85, "oni-repl"]], "Required Arguments": [[86, "required-arguments"]], "Command Line Options": [[86, "command-line-options"]], "REPL Commands": [[86, "repl-commands"]]}, "indexentries": {"can i use headstage_64 with a silicon probe instead of tetrodes?": [[52, "term-Can-I-use-headstage_64-with-a-silicon-probe-instead-of-tetrodes"]], "can i use my older intan headstages with the system?": [[52, "term-Can-I-use-my-older-Intan-headstages-with-the-system"]], "how is oni different than onix?": [[52, "term-How-is-ONI-different-than-ONIX"]], "i have existing acquisition hardware. can i can use your api and software to acquire data from it?": [[52, "term-I-have-existing-acquisition-hardware.-Can-I-can-use-your-API-and-software-to-acquire-data-from-it"]], "i have existing acquisition software. can i integrate support for onix hardware using your api?": [[52, "term-I-have-existing-acquisition-software.-Can-I-integrate-support-for-ONIX-hardware-using-your-API"]], "is onix hardware available for purchase?": [[52, "term-Is-ONIX-hardware-available-for-purchase"]], "what does onix stand for?": [[52, "term-What-does-ONIX-stand-for"]], "what is onix?": [[52, "term-What-is-ONIX"]], "what is open ephys?": [[52, "term-What-is-Open-Ephys"]], "where do i get help when using the system?": [[52, "term-Where-do-I-get-help-when-using-the-system"]], "why is there no open ephys gui plugin for onix hardware?": [[52, "term-Why-is-there-no-Open-Ephys-GUI-plugin-for-ONIX-hardware"]]}}) \ No newline at end of file