From 09a811fff65ec2befc2c28e6a6fa01386c487999 Mon Sep 17 00:00:00 2001
From: cjsha <cs@open-ephys.org>
Date: Fri, 12 Apr 2024 14:36:40 -0400
Subject: [PATCH] Update AnalogIODevice workflow

- New AnalogIODevice.bonsai (from Jon) saves data
- Added a Python file (from Jon) to read data
---
 .../Bonsai.ONIX/Nodes/AnalogIODevice.rst      |  5 ++++
 .../_static/bonsai/workflows/AnalogIO.bonsai  | 23 +++++++++++++++++--
 source/_static/bonsai/workflows/AnalogIO.svg  |  4 ++--
 .../bonsai/workflows/load-analog-data.py      | 14 +++++++++++
 4 files changed, 42 insertions(+), 4 deletions(-)
 create mode 100644 source/_static/bonsai/workflows/load-analog-data.py

diff --git a/source/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst b/source/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst
index 78ce0bd0..dbd421ce 100644
--- a/source/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst	
+++ b/source/Software Guide/Bonsai.ONIX/Nodes/AnalogIODevice.rst	
@@ -73,3 +73,8 @@ options.
       - The direction of the channel. If set to Output, the measured voltage is
         automatically looped back through the analog input.
 
+Loading Scripts
+--------------------------
+The following scripts can be used to load the data produced by this workflow in Python (using Numpy):
+
+- :download:`load-analog-data.py <../../../_static/bonsai/workflows/load-analog-data.py>` 
diff --git a/source/_static/bonsai/workflows/AnalogIO.bonsai b/source/_static/bonsai/workflows/AnalogIO.bonsai
index 1776309a..3c14f4e1 100644
--- a/source/_static/bonsai/workflows/AnalogIO.bonsai
+++ b/source/_static/bonsai/workflows/AnalogIO.bonsai
@@ -1,7 +1,8 @@
 <?xml version="1.0" encoding="utf-8"?>
-<WorkflowBuilder Version="2.6.2"
+<WorkflowBuilder Version="2.8.1"
                  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
                  xmlns:p1="clr-namespace:Bonsai.ONIX;assembly=Bonsai.ONIX"
+                 xmlns:dsp="clr-namespace:Bonsai.Dsp;assembly=Bonsai.Dsp"
                  xmlns="https://bonsai-rx.org/2018/workflow">
   <Workflow>
     <Nodes>
@@ -69,14 +70,32 @@
       <Expression xsi:type="MemberSelector">
         <Selector>Data</Selector>
       </Expression>
+      <Expression xsi:type="Combinator">
+        <Combinator xsi:type="dsp:MatrixWriter">
+          <dsp:Path>analog-data_.raw</dsp:Path>
+          <dsp:Suffix>Timestamp</dsp:Suffix>
+          <dsp:Overwrite>false</dsp:Overwrite>
+          <dsp:Layout>ColumnMajor</dsp:Layout>
+        </Combinator>
+      </Expression>
       <Expression xsi:type="MemberSelector">
         <Selector>Clock</Selector>
       </Expression>
+      <Expression xsi:type="Combinator">
+        <Combinator xsi:type="dsp:MatrixWriter">
+          <dsp:Path>analog-clock_.raw</dsp:Path>
+          <dsp:Suffix>Timestamp</dsp:Suffix>
+          <dsp:Overwrite>false</dsp:Overwrite>
+          <dsp:Layout>ColumnMajor</dsp:Layout>
+        </Combinator>
+      </Expression>
     </Nodes>
     <Edges>
       <Edge From="1" To="2" Label="Source1" />
       <Edge From="2" To="3" Label="Source1" />
-      <Edge From="2" To="4" Label="Source1" />
+      <Edge From="2" To="5" Label="Source1" />
+      <Edge From="3" To="4" Label="Source1" />
+      <Edge From="5" To="6" Label="Source1" />
     </Edges>
   </Workflow>
 </WorkflowBuilder>
\ No newline at end of file
diff --git a/source/_static/bonsai/workflows/AnalogIO.svg b/source/_static/bonsai/workflows/AnalogIO.svg
index 0a134fc1..0e3c5e01 100644
--- a/source/_static/bonsai/workflows/AnalogIO.svg
+++ b/source/_static/bonsai/workflows/AnalogIO.svg
@@ -1,3 +1,3 @@
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diff --git a/source/_static/bonsai/workflows/load-analog-data.py b/source/_static/bonsai/workflows/load-analog-data.py
new file mode 100644
index 00000000..6deeb963
--- /dev/null
+++ b/source/_static/bonsai/workflows/load-analog-data.py
@@ -0,0 +1,14 @@
+import numpy as np
+import matplotlib.pyplot as plt
+
+# Load data from AnalogIO workflow
+suffix = '2024-04-11T12_24_25'; # Change to match file names' suffix
+
+analog_time = np.fromfile('analog-clock_' + suffix + '.raw', dtype=np.uint64) / 250e6
+analog_data = np.fromfile('analog-data_' + suffix + '.raw', dtype=np.float32)
+analog_data = np.reshape(analog_data, (-1, 12))
+
+
+# plot the first 100k samples on each channel (1 second of data)
+plt.close('all')
+plt.plot(analog_time[0:100000], analog_data[0:100000, :])